Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002889

Physical Location & Seq

Genomic Coordinates Forward (+)

6194292 .. 6197425

Gene Structure 3134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG079700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTGGAACTCTAACATGTTAAGGGCCAAGGCCAACATGTTCTTCCTACTGTTTCTGGTTTCATGGCTTTCTTCTGCTTTAGCCTCTGTGGGTTATGACCACAGGGCTGTTATAGTCGATGGAAAGAGAAGGATTCTCCTTTCTGGGTCTATTCACTACCCCAGAAGCACACCGGAGATGTGGCCGGATTTGCTTCAGAAGGCCAAAGATGGAGGCTTGGATGTGATACAGACCTATGTCTTCTGGAATGGGCACGAACCAAGCCCAGGAAAATATTATTTTGAGGATAGATATGATCTGGTCAAGTTCATCAAGCTGGCTCAACAACATGGCCTATATGTTCATCTCCGGATTGGCCCTTATATTTGTGCTGAATGGAACTTTGGAGGATTCCCTGTTTGGCTGAAATATGTTCCCGGAATGGTTTTCAGAACAGACAATCGTCCTTTCATGGCAGCAATGGAAAAATTTACACAGAAGATTGTGTATATGATGAAGGCAGAAAGGTTGTTCCAAACTCAGGGAGGTCCTATAATTCTGTCTCAGTACCATGGGGGAACAAATTTTGGCCGAACTGCTGGCGGTCCCTTCATTGCAACTAGCTATGACTATGATGCACCTCTAGATGAATATGGACTACCAAGGGAACCAAAATATAGCCATTTGAAATATCTGCACAAAGCCATCAAATTAGCTGAGCCAGCTTTAGTGGCTACTGATGCCGCAGTGTCAAAACTTGGAAATAATCAAGAGGCTCATGTATACCAGTCAAGATCTGGTTGTGCTGCATTCCTTGCAAATTACGACACAAAATACTCCGTGAGAGTGACATTTTGGAATAAGCCATATAACCTGCCACCTTGGTCCATAAGCATTCTTCCTGATTGCAAAACTGAAGTTTTCAACACTGCAAGGAGTTCTTTTCTAAAGGTTGGCCAGAGCCCGCCAACGAAGATGACACCAGTAAGTCACCTTTCTTGGCAAGCTTACATTGAAGAAGTTGCCGCTTCTACTGATGAGAAGGCATTTACATTGGTCGGACTTCGTGAGCAAATAAGTCTCACTAGGGATGCTACAGACTACTTGTGGTACATGACAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

367

Amino Acids

41.88

Weight (kDa)

8.94

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	37 - 182	1.3e-66	Glycosyl hydrolases family 35
Glyco_hydro_35	PF01301	183 - 228	7.8e-15	Glycosyl hydrolases family 35
GHD	PF17834	251 - 305	6.8e-23	Beta-sandwich domain in beta galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56870
fragaria_vesca	FvH4_1g07401 FvH4_1g07410 FvH4_1g07410
malus_domestica	MD02G1079200.v1.1 MD08G1139000.v1.1 MD13G1126600.v1.1 MD15G1206800.v1.1
prunus_persica	Prupe.7G210000_v2.0.a1 Prupe.7G210000_v2.0.a1
pyrus_communis	pycom02g06300 pycom15g18320
rosa_chinensis	RchiOBHm_Chr2g0093301 RchiOBHm_Chr2g0093311 RchiOBHm_Chr3g0459401 RchiOBHm_Chr3g0459561
rosa_laevigata	RLG00000016388 RLG00000016389 RLG00000025083
rosa_multiflora	Rmu_sc0002089.1_g000005
rosa_roxburghii	Rroxscaffold_2G00148200 Rroxscaffold_2G00148210 Rroxscaffold_5G00345960
rosa_rugosa	Rorug02G0034700.1 Rorug03G0036300
rosa_samantha	Rh2AG080700 Rh2AG080800 Rh2CG084000 Rh2DG079700 Rh3AG094200 Rh3BG097100 Rh3CG098400 Rh3DG097900 Rh3DG098900
rosa_wichuraiana	Rw2G006600 Rw2G006610 Rw3G008110 Rw3G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	861
AccI	GTMKAC	1 cut(s)	762
AccIII	TCCGGA	1 cut(s)	348
AciI	CCGC	4 cut(s)	582, 723, 944, 1005
AcoI	YGGCCR	3 cut(s)	182, 568, 934
AcsI	RAATTY	2 cut(s)	467, 562
AcuI	CTGAAG	2 cut(s)	179, 915
AfaI	GTAC	2 cut(s)	548, 1091
AfiI	CCNNNNNNNGG	2 cut(s)	266, 520
AflIII	ACRYGT	2 cut(s)	15, 36
AgsI	TTSAA	3 cut(s)	667, 904, 995
AjnI	CCWGG	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	4 cut(s)	26, 58, 366, 398
AluBI	AGCT	5 cut(s)	316, 603, 695, 704, 986
AluI	AGCT	5 cut(s)	316, 603, 695, 704, 986
Alw26I	GTCTC	2 cut(s)	546, 1064
Aor13HI	TCCGGA	1 cut(s)	348
AoxI	GGCC	8 cut(s)	24, 30, 182, 201, 331, 355, 568, 934
ApeKI	GCWGC	2 cut(s)	455, 785
ApoI	RAATTY	2 cut(s)	467, 562
AspS9I	GGNCC	5 cut(s)	24, 356, 527, 584, 864
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	1 cut(s)	962
AvaII	GGWCC	3 cut(s)	527, 584, 864
BaeGI	GKGCMC	1 cut(s)	255
BalI	TGGCCA	1 cut(s)	936
BanII	GRGCYC	1 cut(s)	944
BbsI	GAAGAC	1 cut(s)	232
BbvI	GCAGC	2 cut(s)	467, 772
BccI	CCATC	3 cut(s)	113, 203, 692
BciT130I	CCWGG	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	2 cut(s)	546, 1064
BfaI	CTAG	3 cut(s)	600, 623, 1065
BfmI	CTRYAG	1 cut(s)	1074
BfuAI	ACCTGC	1 cut(s)	861
BglII	AGATCT	1 cut(s)	773
BisI	GCNGC	4 cut(s)	456, 723, 786, 1005
BlpI	GCTNAGC	1 cut(s)	696
BlsI	GCNGC	4 cut(s)	457, 724, 787, 1006
Bme1390I	CCNGG	2 cut(s)	267, 417
Bme18I	GGWCC	3 cut(s)	527, 584, 864
BmgT120I	GGNCC	5 cut(s)	24, 356, 527, 584, 864
BmiI	GGNNCC	2 cut(s)	586, 648
BmrFI	CCNGG	2 cut(s)	267, 417
BmsI	GCATC	3 cut(s)	604, 709, 1060
BoxI	GACNNNNGTC	2 cut(s)	236, 441
BpiI	GAAGAC	1 cut(s)	232
Bpu1102I	GCTNAGC	1 cut(s)	696
BpuMI	CCSGG	1 cut(s)	417
BsaJI	CCNNGG	5 cut(s)	27, 265, 550, 641, 860
BsaWI	WCCGGW	2 cut(s)	172, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 520
Bse1I	ACTGG	2 cut(s)	766, 962
Bse3DI	GCAATG	2 cut(s)	465, 591
BseAI	TCCGGA	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	5 cut(s)	27, 265, 550, 641, 860
BseGI	GGATG	2 cut(s)	226, 1075
BseLI	CCNNNNNNNGG	2 cut(s)	266, 520
BseMI	GCAATG	2 cut(s)	465, 591
BseMII	CTCAG	3 cut(s)	533, 557, 687
BseNI	ACTGG	2 cut(s)	766, 962
BseSI	GKGCMC	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	467, 772
BsgI	GTGCAG	1 cut(s)	659
BshFI	GGCC	8 cut(s)	26, 32, 184, 203, 333, 357, 570, 936
BsiSI	CCGG	4 cut(s)	173, 185, 349, 417
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	2 cut(s)	266, 520
BsmAI	GTCTC	2 cut(s)	546, 1064
BsmFI	GGGAC	1 cut(s)	570
BsmI	GAATGC	2 cut(s)	788, 873
BsnI	GGCC	8 cut(s)	26, 32, 184, 203, 333, 357, 570, 936
Bsp1286I	GDGCHC	2 cut(s)	255, 944
Bsp13I	TCCGGA	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	295, 773
Bsp1720I	GCTNAGC	1 cut(s)	696
Bsp19I	CCATGG	1 cut(s)	550
BspACI	CCGC	4 cut(s)	582, 723, 944, 1005
BspANI	GGCC	8 cut(s)	26, 32, 184, 203, 333, 357, 570, 936
BspCNI	CTCAG	3 cut(s)	532, 556, 688
BspEI	TCCGGA	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	586, 648
BspMI	ACCTGC	1 cut(s)	861
BsrDI	GCAATG	2 cut(s)	465, 591
BsrI	ACTGG	2 cut(s)	766, 962
BssECI	CCNNGG	5 cut(s)	27, 265, 550, 641, 860
BssMI	GATC	2 cut(s)	295, 773
BssNAI	GTATAC	1 cut(s)	763
BssT1I	CCWWGG	4 cut(s)	27, 550, 641, 860
Bst1107I	GTATAC	1 cut(s)	763
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	5 cut(s)	318, 580, 702, 944, 984
BstDEI	CTNAG	3 cut(s)	519, 543, 696
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	2 cut(s)	226, 1075
BstKTI	GATC	2 cut(s)	298, 776
BstMAI	GTCTC	2 cut(s)	546, 1064
BstMBI	GATC	2 cut(s)	295, 773
BstMWI	GCNNNNNNNGC	5 cut(s)	190, 701, 710, 719, 794
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	2 cut(s)	19, 40
BstPAI	GACNNNNGTC	2 cut(s)	236, 441
BstSCI	CCNGG	2 cut(s)	265, 415
BstSFI	CTRYAG	1 cut(s)	1074
BstSLI	GKGCMC	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	467, 772
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	773
BstYI	RGATCY	1 cut(s)	773
BstZ17I	GTATAC	1 cut(s)	763
BsuRI	GGCC	8 cut(s)	26, 32, 184, 203, 333, 357, 570, 936
BtgI	CCRYGG	1 cut(s)	550
BtsCI	GGATG	2 cut(s)	226, 1075
BtsI	GCAGTG	2 cut(s)	732, 906
BtsIMutI	CAGTG	2 cut(s)	732, 906
BveI	ACCTGC	1 cut(s)	861
Cac8I	GCNNGC	5 cut(s)	318, 580, 702, 944, 984
Cfr13I	GGNCC	5 cut(s)	24, 356, 527, 584, 864
Csp6I	GTAC	2 cut(s)	547, 1090
CviAII	CATG	8 cut(s)	16, 37, 63, 329, 451, 551, 758, 1093
CviQI	GTAC	2 cut(s)	547, 1090
DdeI	CTNAG	3 cut(s)	519, 543, 696
DpnI	GATC	2 cut(s)	297, 775
DpnII	GATC	2 cut(s)	295, 773
EaeI	YGGCCR	3 cut(s)	182, 568, 934
Eco130I	CCWWGG	4 cut(s)	27, 550, 641, 860
Eco24I	GRGCYC	1 cut(s)	944
Eco47I	GGWCC	3 cut(s)	527, 584, 864
Eco57I	CTGAAG	2 cut(s)	179, 915
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	4 cut(s)	27, 550, 641, 860
EcoT38I	GRGCYC	1 cut(s)	944
ErhI	CCWWGG	4 cut(s)	27, 550, 641, 860
FaeI	CATG	8 cut(s)	19, 40, 66, 332, 454, 554, 761, 1096
FalI	AAGNNNNNCTT	2 cut(s)	904, 936
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	8 cut(s)	15, 36, 62, 328, 450, 550, 757, 1092
FauI	CCCGC	1 cut(s)	951
FblI	GTMKAC	1 cut(s)	762
Fnu4HI	GCNGC	4 cut(s)	456, 723, 786, 1005
FokI	GGATG	2 cut(s)	233, 1082
FriOI	GRGCYC	1 cut(s)	944
Fsp4HI	GCNGC	4 cut(s)	456, 723, 786, 1005
FspBI	CTAG	3 cut(s)	600, 623, 1065
GluI	GCNGC	4 cut(s)	456, 723, 786, 1005
HaeIII	GGCC	8 cut(s)	26, 32, 184, 203, 333, 357, 570, 936
HapII	CCGG	4 cut(s)	173, 185, 349, 417
Hin1II	CATG	8 cut(s)	19, 40, 66, 332, 454, 554, 761, 1096
HindIII	AAGCTT	1 cut(s)	984
HinfI	GANTC	2 cut(s)	133, 390
HpaII	CCGG	4 cut(s)	173, 185, 349, 417
HphI	GGTGA	1 cut(s)	962
Hpy166II	GTNNAC	1 cut(s)	763
Hpy188I	TCNGA	3 cut(s)	198, 431, 1040
Hpy188III	TCNNGA	7 cut(s)	244, 349, 623, 749, 771, 881, 1046
Hpy8I	GTNNAC	1 cut(s)	763
HpyAV	CCTTC	5 cut(s)	123, 193, 490, 598, 1015
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4V	TGCA	7 cut(s)	596, 617, 676, 788, 797, 888, 911
HpyF10VI	GCNNNNNNNGC	5 cut(s)	190, 701, 710, 719, 794
HpyF3I	CTNAG	3 cut(s)	519, 543, 696
Hsp92II	CATG	8 cut(s)	19, 40, 66, 332, 454, 554, 761, 1096
Kpn2I	TCCGGA	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	295, 773
Lsp1109I	GCAGC	2 cut(s)	467, 772
LweI	GCATC	3 cut(s)	604, 709, 1060
MaeI	CTAG	3 cut(s)	600, 623, 1065
MaeIII	GTNAC	2 cut(s)	826, 968
MalI	GATC	2 cut(s)	297, 775
MboI	GATC	2 cut(s)	295, 773
MboII	GAAGA	7 cut(s)	34, 63, 232, 490, 869, 964, 1007
MflI	RGATCY	1 cut(s)	773
MhlI	GDGCHC	2 cut(s)	255, 944
MlsI	TGGCCA	1 cut(s)	936
MluCI	AATT	5 cut(s)	467, 534, 562, 689, 799
MluNI	TGGCCA	1 cut(s)	936
MmeI	TCCRAC	1 cut(s)	1018
MnlI	CCTC	7 cut(s)	94, 206, 277, 380, 518, 630, 745
Mox20I	TGGCCA	1 cut(s)	936
MroI	TCCGGA	1 cut(s)	348
MscI	TGGCCA	1 cut(s)	936
MseI	TTAA	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	936
MspI	CCGG	4 cut(s)	173, 185, 349, 417
MspR9I	CCNGG	2 cut(s)	267, 417
Mva1269I	GAATGC	2 cut(s)	788, 873
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	5 cut(s)	190, 701, 710, 719, 794
NciI	CCSGG	1 cut(s)	417
NcoI	CCATGG	1 cut(s)	550
NdeII	GATC	2 cut(s)	295, 773
NlaIII	CATG	8 cut(s)	19, 40, 66, 332, 454, 554, 761, 1096
NlaIV	GGNNCC	2 cut(s)	586, 648
NmuCI	GTSAC	2 cut(s)	826, 968
NspI	RCATGY	2 cut(s)	19, 40
PciI	ACATGT	2 cut(s)	15, 36
PctI	GAATGC	2 cut(s)	788, 873
PfeI	GAWTC	2 cut(s)	133, 390
PfoI	TCCNGGA	1 cut(s)	415
PkrI	GCNGC	4 cut(s)	457, 724, 787, 1006
PpuMI	RGGWCCY	1 cut(s)	527
PscI	ACATGT	2 cut(s)	15, 36
PshAI	GACNNNNGTC	2 cut(s)	236, 441
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	586, 648
PspPI	GGNCC	5 cut(s)	24, 356, 527, 584, 864
PspPPI	RGGWCCY	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	773
RsaI	GTAC	2 cut(s)	548, 1091
RsaNI	GTAC	2 cut(s)	547, 1090
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	4 cut(s)	456, 723, 786, 1005
Sau3AI	GATC	2 cut(s)	295, 773
Sau96I	GGNCC	5 cut(s)	24, 356, 527, 584, 864
ScrFI	CCNGG	2 cut(s)	267, 417
SduI	GDGCHC	2 cut(s)	255, 944
SfaNI	GCATC	3 cut(s)	604, 709, 1060
SfcI	CTRYAG	1 cut(s)	1074
SinI	GGWCC	3 cut(s)	527, 584, 864
Sse9I	AATT	5 cut(s)	467, 534, 562, 689, 799
SsiI	CCGC	4 cut(s)	582, 723, 944, 1005
SspI	AATATT	1 cut(s)	275
SspMI	CTAG	3 cut(s)	600, 623, 1065
StyD4I	CCNGG	2 cut(s)	265, 415
StyI	CCWWGG	4 cut(s)	27, 550, 641, 860
TaaI	ACNGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	117
TasI	AATT	5 cut(s)	467, 534, 562, 689, 799
TauI	GCSGC	2 cut(s)	725, 1007
TfiI	GAWTC	2 cut(s)	133, 390
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	2 cut(s)	732, 913
TseFI	GTSAC	2 cut(s)	826, 968
TseI	GCWGC	2 cut(s)	455, 785
Tsp45I	GTSAC	2 cut(s)	826, 968
TspDTI	ATGAA	7 cut(s)	51, 298, 332, 439, 509, 580, 642
TspGWI	ACGGA	1 cut(s)	808
TspRI	CASTG	2 cut(s)	732, 913
VpaK11BI	GGWCC	3 cut(s)	527, 584, 864
XapI	RAATTY	2 cut(s)	467, 562
XbaI	TCTAGA	1 cut(s)	622
XceI	RCATGY	2 cut(s)	19, 40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	773
XmiI	GTMKAC	1 cut(s)	762
XspI	CTAG	3 cut(s)	600, 623, 1065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.