Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002889

Physical Location & Seq

Genomic Coordinates Forward (+)

7750540 .. 7751136

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG097900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGATTAGATTTTCTGAAACAATGTGGAACTCTAACACGTTGAGGGCCAAGGCCAATATGTTCCTGCTACTGTTTCTGGTTTCATGGTTCTCTTCTGCTTTAGCCTCTGTGGGTTATGACCACAGAGCTATTATAGTCGATGGAAAGAGAAGGATTCTTATTTCAGGGTCTATTCACTACCCCAGAAGCACACCTGAGATGTGGCCGGATTTGATTCAGAAGGCTAAAGATGGAGGCTTGGATGTGATACAGACTTATGTGTTCTGGAATGGGCATGAACCTAACCCAGGAAAATATTATTTTGAGGATAGATATGATTTGGTCAAGTTCATCAAGCTGGCTCAACTTCATGGCCTATATGTTCATCTTCGGATTGGTCCTTATATTTATGCTGAATGGAACTTAGGAGGATTCCCTGTTTGGCTGAAATATGTTCCCGGAATCGCTTTCAGAACAGACAATCGCCCTTTCATGGCAGCAATGGAAAAATTTACACAGAAGATTGTGTATATGATGAAGGCAGAAGGGTTGTTCCAAACTCAGGGAGGTCCTATAATTCTGTCTCAGATTGAAAATGAATTTGGACCGGTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

198

Amino Acids

22.92

Weight (kDa)

9.0

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	44 - 195	3.3e-70	Glycosyl hydrolases family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56870
fragaria_vesca	FvH4_1g07401 FvH4_1g07410 FvH4_1g07410
malus_domestica	MD02G1079200.v1.1 MD08G1139000.v1.1 MD13G1126600.v1.1 MD15G1206800.v1.1
prunus_persica	Prupe.7G210000_v2.0.a1 Prupe.7G210000_v2.0.a1
pyrus_communis	pycom02g06300 pycom15g18320
rosa_chinensis	RchiOBHm_Chr2g0093301 RchiOBHm_Chr2g0093311 RchiOBHm_Chr3g0459401 RchiOBHm_Chr3g0459561
rosa_laevigata	RLG00000016388 RLG00000016389 RLG00000025083
rosa_multiflora	Rmu_sc0002089.1_g000005
rosa_roxburghii	Rroxscaffold_2G00148200 Rroxscaffold_2G00148210 Rroxscaffold_5G00345960
rosa_rugosa	Rorug02G0034700.1 Rorug03G0036300
rosa_samantha	Rh2AG080700 Rh2AG080800 Rh2CG084000 Rh2DG079700 Rh3AG094200 Rh3BG097100 Rh3CG098400 Rh3DG097900 Rh3DG098900
rosa_wichuraiana	Rw2G006600 Rw2G006610 Rw3G008110 Rw3G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	203
AcsI	RAATTY	2 cut(s)	488, 578
AfiI	CCNNNNNNNGG	3 cut(s)	287, 472, 541
AflIII	ACRYGT	1 cut(s)	36
AgeI	ACCGGT	1 cut(s)	586
AgsI	TTSAA	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	2 cut(s)	128, 337
AluI	AGCT	2 cut(s)	128, 337
Alw26I	GTCTC	1 cut(s)	567
AoxI	GGCC	4 cut(s)	45, 51, 203, 352
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	2 cut(s)	488, 578
AsiGI	ACCGGT	1 cut(s)	586
AspS9I	GGNCC	4 cut(s)	45, 377, 548, 584
AsuC2I	CCSGG	1 cut(s)	438
AvaII	GGWCC	3 cut(s)	377, 548, 584
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	2 cut(s)	134, 224
BciT130I	CCWGG	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	567
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	2 cut(s)	288, 438
Bme18I	GGWCC	3 cut(s)	377, 548, 584
BmgT120I	GGNCC	4 cut(s)	45, 377, 548, 584
BmrFI	CCNGG	2 cut(s)	288, 438
BpuMI	CCSGG	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	48, 286
BsaWI	WCCGGW	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 472, 541
Bse118I	RCCGGY	1 cut(s)	586
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	48, 286
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	3 cut(s)	287, 472, 541
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	3 cut(s)	186, 554, 578
BseXI	GCAGC	1 cut(s)	488
BshFI	GGCC	4 cut(s)	47, 53, 205, 354
BshTI	ACCGGT	1 cut(s)	586
BsiSI	CCGG	3 cut(s)	206, 438, 587
BslI	CCNNNNNNNGG	3 cut(s)	287, 472, 541
BsmAI	GTCTC	1 cut(s)	567
BsnI	GGCC	4 cut(s)	47, 53, 205, 354
BspANI	GGCC	4 cut(s)	47, 53, 205, 354
BspCNI	CTCAG	3 cut(s)	187, 553, 577
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	586
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	2 cut(s)	48, 286
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	4 cut(s)	195, 403, 540, 564
BstENI	CCTNNNNNAGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	567
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	286, 436
BstV1I	GCAGC	1 cut(s)	488
BsuRI	GGCC	4 cut(s)	47, 53, 205, 354
BtsCI	GGATG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	4 cut(s)	45, 377, 548, 584
CspAI	ACCGGT	1 cut(s)	586
CviAII	CATG	4 cut(s)	84, 275, 350, 472
DdeI	CTNAG	4 cut(s)	195, 403, 540, 564
EaeI	YGGCCR	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	48
Eco47I	GGWCC	3 cut(s)	377, 548, 584
EcoNI	CCTNNNNNAGG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	4 cut(s)	87, 278, 353, 475
FatI	CATG	4 cut(s)	83, 274, 349, 471
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	477
GluI	GCNGC	1 cut(s)	477
HaeIII	GGCC	4 cut(s)	47, 53, 205, 354
HapII	CCGG	3 cut(s)	206, 438, 587
Hin1II	CATG	4 cut(s)	87, 278, 353, 475
HinfI	GANTC	4 cut(s)	154, 214, 411, 441
HpaII	CCGG	3 cut(s)	206, 438, 587
Hpy188I	TCNGA	5 cut(s)	16, 219, 372, 452, 567
Hpy188III	TCNNGA	1 cut(s)	265
HpyAV	CCTTC	4 cut(s)	144, 214, 511, 518
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	38
HpyF3I	CTNAG	4 cut(s)	195, 403, 540, 564
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	4 cut(s)	87, 278, 353, 475
Lsp1109I	GCAGC	1 cut(s)	488
MaeII	ACGT	1 cut(s)	38
MboII	GAAGA	3 cut(s)	84, 359, 511
MluCI	AATT	3 cut(s)	488, 555, 578
MnlI	CCTC	6 cut(s)	36, 115, 227, 298, 401, 539
MspI	CCGG	3 cut(s)	206, 438, 587
MspR9I	CCNGG	2 cut(s)	288, 438
MvaI	CCWGG	1 cut(s)	288
NciI	CCSGG	1 cut(s)	438
NlaIII	CATG	4 cut(s)	87, 278, 353, 475
PfeI	GAWTC	4 cut(s)	154, 214, 411, 441
PfoI	TCCNGGA	1 cut(s)	436
PinAI	ACCGGT	1 cut(s)	586
PkrI	GCNGC	1 cut(s)	478
PpuMI	RGGWCCY	1 cut(s)	548
Psp5II	RGGWCCY	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspPI	GGNCC	4 cut(s)	45, 377, 548, 584
PspPPI	RGGWCCY	1 cut(s)	548
SatI	GCNGC	1 cut(s)	477
Sau96I	GGNCC	4 cut(s)	45, 377, 548, 584
ScrFI	CCNGG	2 cut(s)	288, 438
SetI	ASST	6 cut(s)	41, 130, 196, 283, 339, 550
SinI	GGWCC	3 cut(s)	377, 548, 584
Sse9I	AATT	3 cut(s)	488, 555, 578
SspI	AATATT	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	286, 436
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	138
TasI	AATT	3 cut(s)	488, 555, 578
TfiI	GAWTC	4 cut(s)	154, 214, 411, 441
TseI	GCWGC	1 cut(s)	476
TspDTI	ATGAA	8 cut(s)	72, 291, 319, 338, 353, 460, 530, 591
VpaK11BI	GGWCC	3 cut(s)	377, 548, 584
XagI	CCTNNNNNAGG	1 cut(s)	285
XapI	RAATTY	2 cut(s)	488, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.