Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002889

Physical Location & Seq

Genomic Coordinates Forward (+)

7784597 .. 7787024

Gene Structure 2428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG097100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2184 bp

ATGATTAGATTTTCTGAAACAATGTGGAACTCCAAGGCCAACATGTTCATGCTACTGTTTCTGGTTTCATGGTTCTCTTCTGCTTTAGCCTCTGTGGGTTATGACCACAGAGCTATTATAGTCGATGGAAAGAGAAGGATTCTTATTTCAGGGTCTATTCACTACCCCAGAAGCACACCTGAGATGTGGCCGGATTTGATTCAGAAGGCTAAAGATGGAGGCTTGGATGTGATACAGACTTATGTGTTCTGGAATGGGCATGAACCTATCCCAGGAAAATATTATTTTGAGGATAGATATGATTTGGTCAAGTTCATCAAGCTGGCTCAACTTCATGGCCTATATGTTCATCTTCGGATTGGTCCTTATATTTGTGCTGAATGGAACTTAGGAGGATTCCCTGTTTGGCTGAAATATGTTCCCGGAATCGCTTTCAGAACAGACAATCGTCCTTTCATGGCAGCAATGGAAAAATTTACACAGAAGATTGTGTATATGATGAAGGCAGAAGGGTTGTTCCAAACTCAGGGAGGTCCTATAATTCTGTCTCAGATTGAAAATGAATTTGGACCGGTAGAGTGGGAAATTGGTGCACCTGGTAAATCTTATACTCAATGGGCAGCGAAAATGGCTGTGGCTCTCAACACTGGGGTTCCATGGATTATGTGCAAGCAAGAAGATGCCCCTGATCCAATCATCGATACTTGTAATGGCTTCTACTGTGAAAACTTCACTCCAAACAAGAACTATAAGCCCAAAATTTGGACGGAAATCTGGACTGGCTGGTATACAGAATTTGGTGGGGCAGTTCCTACTAGACCTGCACAGGACTTGGCATTTTCAGTAGCAAGGTTTATACAAAATGGTGGTTCTTTTGCCAATTACTACATGTACCATGGAGGAACAAATTTTGGCAGAACTGCTGGCGGTCCCTTCATCGCAACTAGCTATGACTATGATGCCCCTCTCGATGAATATGGACTACCAAGGGAACCAAAATATAGCCATTTAAAATATCTGCACAAAGCCATCAAATTAGCTGAGTCAGCTTTAGTGGCTACTGATGCTGCAGTGTCAAAACTCGGAAGTAATCAAGAGGCTCATGTATACCAGTCGATATCTGGTTGTGCTGCATTCCTTGCAAATTACGACACAAAATACTCCGTGAGTGTGATGTTTTGGAATAAGCAATATAACCTGCCACCTTGGTCCATAAGCATTCTCCCTGACTGCAAAACTGAAGTTTTCAACACTGCAAGGATTGGCCAGAGCCCGCCGACGAAGATGACACCAGTAGCATCCCTTTCTTGGCAGGCGTACATGGAAGAAATTGCCACTGCTAATGATGACAATGCAATTACACTGGTCGGACTTCGTGAGCAAATAAGTCAAACTAGGGATGCTACAGACTACTTGTGGTACATGACCAATATCACAATAGGTCCTAATGAACAATTTCTAAGAACCGGACAGTACCCTATTCTCACTGTCGATTCAGCTGGGCATGCCTTGCTTGTTTTCATCAATGGTCAACTATCAGGATCTGCTTATGGAACATTGGAGTTCCCCAAGTTAGAATTCAAGCAGGGTGTGAAGCTGAGAGCTGGCATTAACGAGCTTGCTTTACTAAGCGTTTCTGTTGGTCTACCGAATGTTGGTGTGCACTTTGAGACATGGAATGCCGGAGTTCTAGGGCCAGTCACATTGAAGGGTGTGAATTCGGGAACATGGGATATGTCACGATGGCAATGGACCTATAAGACTGGTATGAAAGGTGAAGATATGAGCCTCCATACCGTGGGTGGAAGTTCTTCTATTGAATGGGTACAAGGATCACTATTGGCTCAAAATCAACCCCTTACATGGTACAAGGCTATTTTAGATGCACCACCAGGAAATGCACCATTAGCTTTAGATATGGGTAGCATGGGAAAGGGTCAAATGTGGATTAATGGTCGGAGCATCGGACGCCATTGGCCAGCATATACAGCAAAAGGCAACTGTGGTACTTGTTATTATGCTGGAACTTATACTGAAAACAAATGCCGAACAAATTGTGGCCAGCCTTCCCAGAGATGGTACCATGTTCCCCGCTCGTGGTTGAAGCCAAGTGGGAATTTATTGGTTGTGTTTGAAGAATGGGGTGGTGATCCGACTAAGATTGCTTTGGTAGCAAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

727

Amino Acids

81.32

Weight (kDa)

7.89

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	39 - 343	7e-119	Glycosyl hydrolases family 35
GHD	PF17834	366 - 421	3.7e-22	Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd	PF21467	471 - 519	5.1e-06	Beta-galactosidase, galactose-binding domain
BetaGal_gal-bd	PF21467	620 - 706	5.7e-24	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56870
fragaria_vesca	FvH4_1g07401 FvH4_1g07410 FvH4_1g07410
malus_domestica	MD02G1079200.v1.1 MD08G1139000.v1.1 MD13G1126600.v1.1 MD15G1206800.v1.1
prunus_persica	Prupe.7G210000_v2.0.a1 Prupe.7G210000_v2.0.a1
pyrus_communis	pycom02g06300 pycom15g18320
rosa_chinensis	RchiOBHm_Chr2g0093301 RchiOBHm_Chr2g0093311 RchiOBHm_Chr3g0459401 RchiOBHm_Chr3g0459561
rosa_laevigata	RLG00000016388 RLG00000016389 RLG00000025083
rosa_multiflora	Rmu_sc0002089.1_g000005
rosa_roxburghii	Rroxscaffold_2G00148200 Rroxscaffold_2G00148210 Rroxscaffold_5G00345960
rosa_rugosa	Rorug02G0034700.1 Rorug03G0036300
rosa_samantha	Rh2AG080700 Rh2AG080800 Rh2CG084000 Rh2DG079700 Rh3AG094200 Rh3BG097100 Rh3CG098400 Rh3DG097900 Rh3DG098900
rosa_wichuraiana	Rw2G006600 Rw2G006610 Rw3G008110 Rw3G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	829, 1206
Acc65I	GGTACC	1 cut(s)	2079
AccB1I	GGYRCC	1 cut(s)	2079
AccB7I	CCANNNNNTGG	2 cut(s)	762, 1798
AccBSI	CCGCTC	1 cut(s)	2094
AccI	GTMKAC	3 cut(s)	788, 1107, 1645
AciI	CCGC	3 cut(s)	927, 1274, 2092
AclWI	GGATC	4 cut(s)	683, 1549, 1840, 2144
AcoI	YGGCCR	4 cut(s)	188, 1264, 1976, 2059
AcsI	RAATTY	8 cut(s)	473, 563, 759, 794, 907, 1577, 1717, 2116
AcuI	CTGAAG	1 cut(s)	1260
AcyI	GRCGYC	1 cut(s)	1969
AfaI	GTAC	8 cut(s)	893, 1319, 1421, 1475, 1827, 1868, 2008, 2081
AfiI	CCNNNNNNNGG	9 cut(s)	272, 526, 762, 1308, 1655, 1798, 1863, 2076, 2097
AflIII	ACRYGT	2 cut(s)	42, 888
AgeI	ACCGGT	1 cut(s)	571
AgsI	TTSAA	7 cut(s)	557, 1249, 1582, 1708, 1820, 2104, 2135
AjnI	CCWGG	3 cut(s)	271, 595, 1891
AjuI	GAANNNNNNNTTGG	4 cut(s)	549, 581, 1562, 1594
Alw21I	GWGCWC	2 cut(s)	595, 1665
Alw26I	GTCTC	2 cut(s)	552, 1664
Alw44I	GTGCAC	2 cut(s)	591, 1661
AlwI	GGATC	4 cut(s)	683, 1549, 1840, 2144
AlwNI	CAGNNNCTG	1 cut(s)	1544
AoxI	GGCC	7 cut(s)	36, 188, 337, 1264, 1694, 1976, 2059
ApaLI	GTGCAC	2 cut(s)	591, 1661
ApeKI	GCWGC	4 cut(s)	461, 620, 1067, 1130
ApoI	RAATTY	8 cut(s)	473, 563, 759, 794, 907, 1577, 1717, 2116
AseI	ATTAAT	1 cut(s)	1950
AsiGI	ACCGGT	1 cut(s)	571
Asp700I	GAANNNNTTC	2 cut(s)	1455, 1810
Asp718I	GGTACC	1 cut(s)	2079
AspS9I	GGNCC	8 cut(s)	362, 533, 569, 929, 1209, 1442, 1694, 1752
AsuC2I	CCSGG	1 cut(s)	423
AsuHPI	GGTGA	2 cut(s)	1787, 2159
AvaII	GGWCC	7 cut(s)	362, 533, 569, 929, 1209, 1442, 1752
BaeGI	GKGCMC	2 cut(s)	595, 1665
BalI	TGGCCA	3 cut(s)	1266, 1978, 2061
BanI	GGYRCC	1 cut(s)	2079
BanII	GRGCYC	1 cut(s)	1274
BauI	CACGAG	1 cut(s)	2095
Bbv12I	GWGCWC	2 cut(s)	595, 1665
BbvI	GCAGC	4 cut(s)	473, 632, 1054, 1117
BccI	CCATC	5 cut(s)	119, 209, 1037, 1737, 2070
BciT130I	CCWGG	3 cut(s)	273, 597, 1893
BcnI	CCSGG	1 cut(s)	423
BcoDI	GTCTC	2 cut(s)	552, 1664
BfaI	CTAG	4 cut(s)	816, 945, 1395, 1691
BfmI	CTRYAG	2 cut(s)	1068, 1404
BfuAI	ACCTGC	2 cut(s)	829, 1206
BisI	GCNGC	4 cut(s)	462, 621, 1068, 1131
BlsI	GCNGC	4 cut(s)	463, 622, 1069, 1132
Bme1390I	CCNGG	4 cut(s)	273, 423, 597, 1893
Bme18I	GGWCC	7 cut(s)	362, 533, 569, 929, 1209, 1442, 1752
BmgT120I	GGNCC	8 cut(s)	362, 533, 569, 929, 1209, 1442, 1694, 1752
BmiI	GGNNCC	4 cut(s)	654, 931, 993, 2081
BmrFI	CCNGG	4 cut(s)	273, 423, 597, 1893
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	7 cut(s)	670, 949, 1054, 1307, 1390, 1873, 1971
BmuI	ACTGGG	1 cut(s)	657
BoxI	GACNNNNGTC	1 cut(s)	447
BpuMI	CCSGG	1 cut(s)	423
Bsa29I	ATCGAT	1 cut(s)	699
BsaHI	GRCGYC	1 cut(s)	1969
BsaJI	CCNNGG	7 cut(s)	33, 271, 656, 895, 986, 1205, 1797
BsaWI	WCCGGW	2 cut(s)	571, 1466
Bsc4I	CCNNNNNNNGG	9 cut(s)	272, 526, 762, 1308, 1655, 1798, 1863, 2076, 2097
Bse118I	RCCGGY	1 cut(s)	571
Bse1I	ACTGG	7 cut(s)	652, 784, 1111, 1292, 1368, 1697, 1768
Bse3DI	GCAATG	2 cut(s)	471, 1754
BseBI	CCWGG	3 cut(s)	273, 597, 1893
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	7 cut(s)	33, 271, 656, 895, 986, 1205, 1797
BseGI	GGATG	3 cut(s)	232, 1298, 1405
BseLI	CCNNNNNNNGG	9 cut(s)	272, 526, 762, 1308, 1655, 1798, 1863, 2076, 2097
BseMI	GCAATG	2 cut(s)	471, 1754
BseMII	CTCAG	5 cut(s)	171, 539, 563, 1032, 1589
BseNI	ACTGG	7 cut(s)	652, 784, 1111, 1292, 1368, 1697, 1768
BseSI	GKGCMC	2 cut(s)	595, 1665
BseXI	GCAGC	4 cut(s)	473, 632, 1054, 1117
BseYI	CCCAGC	1 cut(s)	1499
BsgI	GTGCAG	2 cut(s)	807, 1004
BshFI	GGCC	7 cut(s)	38, 190, 339, 1266, 1696, 1978, 2061
BshNI	GGYRCC	1 cut(s)	2079
BshTI	ACCGGT	1 cut(s)	571
BshVI	ATCGAT	1 cut(s)	699
BsiHKAI	GWGCWC	2 cut(s)	595, 1665
BsiSI	CCGG	5 cut(s)	191, 423, 572, 1467, 1683
BslFI	GGGAC	1 cut(s)	915
BslI	CCNNNNNNNGG	9 cut(s)	272, 526, 762, 1308, 1655, 1798, 1863, 2076, 2097
BsmAI	GTCTC	2 cut(s)	552, 1664
BsmFI	GGGAC	1 cut(s)	915
BsmI	GAATGC	3 cut(s)	1133, 1218, 1684
BsnI	GGCC	7 cut(s)	38, 190, 339, 1266, 1696, 1978, 2061
Bsp1286I	GDGCHC	3 cut(s)	595, 1274, 1665
Bsp143I	GATC	4 cut(s)	688, 1541, 1832, 2149
Bsp19I	CCATGG	2 cut(s)	656, 895
BspACI	CCGC	3 cut(s)	927, 1274, 2092
BspANI	GGCC	7 cut(s)	38, 190, 339, 1266, 1696, 1978, 2061
BspCNI	CTCAG	5 cut(s)	172, 538, 562, 1033, 1590
BspDI	ATCGAT	1 cut(s)	699
BspLI	GGNNCC	4 cut(s)	654, 931, 993, 2081
BspMAI	CTGCAG	1 cut(s)	1072
BspMI	ACCTGC	2 cut(s)	829, 1206
BspPI	GGATC	4 cut(s)	683, 1549, 1840, 2144
BspT107I	GGYRCC	1 cut(s)	2079
BsrBI	CCGCTC	1 cut(s)	2094
BsrDI	GCAATG	2 cut(s)	471, 1754
BsrFI	RCCGGY	1 cut(s)	571
BsrI	ACTGG	7 cut(s)	652, 784, 1111, 1292, 1368, 1697, 1768
BssAI	RCCGGY	1 cut(s)	571
BssECI	CCNNGG	7 cut(s)	33, 271, 656, 895, 986, 1205, 1797
BssMI	GATC	4 cut(s)	688, 1541, 1832, 2149
BssNAI	GTATAC	2 cut(s)	789, 1108
BssNI	GRCGYC	1 cut(s)	1969
BssSI	CACGAG	1 cut(s)	2095
BssT1I	CCWWGG	5 cut(s)	33, 656, 895, 986, 1205
Bst1107I	GTATAC	2 cut(s)	789, 1108
Bst2BI	CACGAG	1 cut(s)	2095
Bst2UI	CCWGG	3 cut(s)	273, 597, 1893
Bst4CI	ACNGT	6 cut(s)	57, 722, 1473, 1489, 1798, 2003
Bst6I	CTCTTC	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	1969
BstAPI	GCANNNNNTGC	2 cut(s)	1139, 1510
BstDEI	CTNAG	9 cut(s)	180, 388, 525, 549, 1041, 1460, 1598, 1628, 2157
BstDSI	CCRYGG	3 cut(s)	656, 895, 1797
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	3 cut(s)	232, 1298, 1405
BstKTI	GATC	4 cut(s)	691, 1544, 1835, 2152
BstMAI	GTCTC	2 cut(s)	552, 1664
BstMBI	GATC	4 cut(s)	688, 1541, 1832, 2149
BstNI	CCWGG	3 cut(s)	273, 597, 1893
BstNSI	RCATGY	3 cut(s)	46, 892, 1508
BstPAI	GACNNNNGTC	1 cut(s)	447
BstSCI	CCNGG	4 cut(s)	271, 421, 595, 1891
BstSFI	CTRYAG	2 cut(s)	1068, 1404
BstSLI	GKGCMC	2 cut(s)	595, 1665
BstV1I	GCAGC	4 cut(s)	473, 632, 1054, 1117
BstX2I	RGATCY	1 cut(s)	1541
BstYI	RGATCY	1 cut(s)	1541
BstZ17I	GTATAC	2 cut(s)	789, 1108
Bsu15I	ATCGAT	1 cut(s)	699
BsuRI	GGCC	7 cut(s)	38, 190, 339, 1266, 1696, 1978, 2061
BsuTUI	ATCGAT	1 cut(s)	699
BtgI	CCRYGG	3 cut(s)	656, 895, 1797
BtgZI	GCGATG	1 cut(s)	922
BtsCI	GGATG	3 cut(s)	232, 1298, 1405
BtsI	GCAGTG	3 cut(s)	1077, 1251, 1335
BtsIMutI	CAGTG	6 cut(s)	645, 1077, 1251, 1335, 1361, 1485
BveI	ACCTGC	2 cut(s)	829, 1206
CaiI	CAGNNNCTG	1 cut(s)	1544
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	8 cut(s)	362, 533, 569, 929, 1209, 1442, 1694, 1752
ClaI	ATCGAT	1 cut(s)	699
CseI	GACGC	1 cut(s)	1977
CsiI	ACCWGGT	1 cut(s)	595
Csp6I	GTAC	8 cut(s)	892, 1318, 1420, 1474, 1826, 1867, 2007, 2080
CspAI	ACCGGT	1 cut(s)	571
CviQI	GTAC	8 cut(s)	892, 1318, 1420, 1474, 1826, 1867, 2007, 2080
DdeI	CTNAG	9 cut(s)	180, 388, 525, 549, 1041, 1460, 1598, 1628, 2157
DpnI	GATC	4 cut(s)	690, 1543, 1834, 2151
DpnII	GATC	4 cut(s)	688, 1541, 1832, 2149
DraI	TTTAAA	1 cut(s)	1011
EaeI	YGGCCR	4 cut(s)	188, 1264, 1976, 2059
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	5 cut(s)	33, 656, 895, 986, 1205
Eco24I	GRGCYC	1 cut(s)	1274
Eco32I	GATATC	1 cut(s)	1119
Eco47I	GGWCC	7 cut(s)	362, 533, 569, 929, 1209, 1442, 1752
Eco57I	CTGAAG	1 cut(s)	1260
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoO109I	RGGNCCY	2 cut(s)	533, 1442
EcoRI	GAATTC	2 cut(s)	1577, 1717
EcoRII	CCWGG	3 cut(s)	271, 595, 1891
EcoRV	GATATC	1 cut(s)	1119
EcoT14I	CCWWGG	5 cut(s)	33, 656, 895, 986, 1205
EcoT38I	GRGCYC	1 cut(s)	1274
ErhI	CCWWGG	5 cut(s)	33, 656, 895, 986, 1205
FaqI	GGGAC	1 cut(s)	915
FauI	CCCGC	2 cut(s)	1281, 2099
FblI	GTMKAC	3 cut(s)	788, 1107, 1645
Fnu4HI	GCNGC	4 cut(s)	462, 621, 1068, 1131
FokI	GGATG	3 cut(s)	239, 1285, 1412
FriOI	GRGCYC	1 cut(s)	1274
Fsp4HI	GCNGC	4 cut(s)	462, 621, 1068, 1131
FspBI	CTAG	4 cut(s)	816, 945, 1395, 1691
GluI	GCNGC	4 cut(s)	462, 621, 1068, 1131
GsaI	CCCAGC	1 cut(s)	1503
HaeIII	GGCC	7 cut(s)	38, 190, 339, 1266, 1696, 1978, 2061
HapII	CCGG	5 cut(s)	191, 423, 572, 1467, 1683
HgaI	GACGC	1 cut(s)	1977
Hin1I	GRCGYC	1 cut(s)	1969
HincII	GTYRAC	1 cut(s)	1532
HindII	GTYRAC	1 cut(s)	1532
HinfI	GANTC	6 cut(s)	139, 199, 396, 426, 1043, 1493
HpaII	CCGG	5 cut(s)	191, 423, 572, 1467, 1683
HphI	GGTGA	2 cut(s)	1787, 2159
Hpy166II	GTNNAC	6 cut(s)	593, 789, 1108, 1532, 1646, 1663
Hpy188III	TCNNGA	8 cut(s)	250, 775, 968, 1094, 1376, 1539, 1722, 1740
Hpy8I	GTNNAC	6 cut(s)	593, 789, 1108, 1532, 1646, 1663
Hpy99I	CGWCG	1 cut(s)	1282
HpyAV	CCTTC	7 cut(s)	129, 199, 496, 503, 943, 1702, 2076
HpyCH4III	ACNGT	6 cut(s)	57, 722, 1473, 1489, 1798, 2003
HpyF3I	CTNAG	9 cut(s)	180, 388, 525, 549, 1041, 1460, 1598, 1628, 2157
Hsp92I	GRCGYC	1 cut(s)	1969
KpnI	GGTACC	1 cut(s)	2083
Kzo9I	GATC	4 cut(s)	688, 1541, 1832, 2149
LmnI	GCTCC	1 cut(s)	1959
Lsp1109I	GCAGC	4 cut(s)	473, 632, 1054, 1117
LweI	GCATC	7 cut(s)	670, 949, 1054, 1307, 1390, 1873, 1971
MabI	ACCWGGT	1 cut(s)	595
MaeI	CTAG	4 cut(s)	816, 945, 1395, 1691
MaeIII	GTNAC	2 cut(s)	1699, 1737
MalI	GATC	4 cut(s)	690, 1543, 1834, 2151
MbiI	CCGCTC	1 cut(s)	2094
MboI	GATC	4 cut(s)	688, 1541, 1832, 2149
MboII	GAAGA	9 cut(s)	69, 344, 496, 689, 1294, 1337, 1790, 1803, 2147
MflI	RGATCY	1 cut(s)	1541
MhlI	GDGCHC	3 cut(s)	595, 1274, 1665
MlsI	TGGCCA	3 cut(s)	1266, 1978, 2061
MluNI	TGGCCA	3 cut(s)	1266, 1978, 2061
MlyI	GAGTC	1 cut(s)	1052
MmeI	TCCRAC	3 cut(s)	1348, 1937, 2177
MnlI	CCTC	9 cut(s)	100, 212, 283, 386, 524, 893, 975, 1090, 1799
Mox20I	TGGCCA	3 cut(s)	1266, 1978, 2061
MroXI	GAANNNNTTC	2 cut(s)	1455, 1810
MscI	TGGCCA	3 cut(s)	1266, 1978, 2061
MseI	TTAA	3 cut(s)	1010, 1611, 1950
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	3 cut(s)	1266, 1978, 2061
MspA1I	CMGCKG	1 cut(s)	1499
MspI	CCGG	5 cut(s)	191, 423, 572, 1467, 1683
MspR9I	CCNGG	4 cut(s)	273, 423, 597, 1893
Mva1269I	GAATGC	3 cut(s)	1133, 1218, 1684
MvaI	CCWGG	3 cut(s)	273, 597, 1893
NciI	CCSGG	1 cut(s)	423
NcoI	CCATGG	2 cut(s)	656, 895
NdeII	GATC	4 cut(s)	688, 1541, 1832, 2149
NlaIV	GGNNCC	4 cut(s)	654, 931, 993, 2081
NmuCI	GTSAC	2 cut(s)	1699, 1737
NspI	RCATGY	3 cut(s)	46, 892, 1508
PaeI	GCATGC	1 cut(s)	1508
PciI	ACATGT	2 cut(s)	42, 888
PctI	GAATGC	3 cut(s)	1133, 1218, 1684
PdmI	GAANNNNTTC	2 cut(s)	1455, 1810
PfeI	GAWTC	5 cut(s)	139, 199, 396, 426, 1493
PflMI	CCANNNNNTGG	2 cut(s)	762, 1798
PfoI	TCCNGGA	1 cut(s)	421
PinAI	ACCGGT	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	463, 622, 1069, 1132
PleI	GAGTC	1 cut(s)	1051
PpsI	GAGTC	1 cut(s)	1051
PpuMI	RGGWCCY	2 cut(s)	533, 1442
PscI	ACATGT	2 cut(s)	42, 888
PshAI	GACNNNNGTC	1 cut(s)	447
PshBI	ATTAAT	1 cut(s)	1950
Psp5II	RGGWCCY	2 cut(s)	533, 1442
Psp6I	CCWGG	3 cut(s)	271, 595, 1891
PspFI	CCCAGC	1 cut(s)	1499
PspGI	CCWGG	3 cut(s)	271, 595, 1891
PspN4I	GGNNCC	4 cut(s)	654, 931, 993, 2081
PspPI	GGNCC	8 cut(s)	362, 533, 569, 929, 1209, 1442, 1694, 1752
PspPPI	RGGWCCY	2 cut(s)	533, 1442
PstI	CTGCAG	1 cut(s)	1072
PstNI	CAGNNNCTG	1 cut(s)	1544
PsuI	RGATCY	1 cut(s)	1541
PvuII	CAGCTG	1 cut(s)	1499
RsaI	GTAC	8 cut(s)	893, 1319, 1421, 1475, 1827, 1868, 2008, 2081
RsaNI	GTAC	8 cut(s)	892, 1318, 1420, 1474, 1826, 1867, 2007, 2080
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	1010, 1611, 1950
SatI	GCNGC	4 cut(s)	462, 621, 1068, 1131
Sau3AI	GATC	4 cut(s)	688, 1541, 1832, 2149
Sau96I	GGNCC	8 cut(s)	362, 533, 569, 929, 1209, 1442, 1694, 1752
SchI	GAGTC	1 cut(s)	1052
ScrFI	CCNGG	4 cut(s)	273, 423, 597, 1893
SduI	GDGCHC	3 cut(s)	595, 1274, 1665
SexAI	ACCWGGT	1 cut(s)	595
SfaNI	GCATC	7 cut(s)	670, 949, 1054, 1307, 1390, 1873, 1971
SfcI	CTRYAG	2 cut(s)	1068, 1404
SinI	GGWCC	7 cut(s)	362, 533, 569, 929, 1209, 1442, 1752
SmiMI	CAYNNNNRTG	1 cut(s)	47
SphI	GCATGC	1 cut(s)	1508
SsiI	CCGC	3 cut(s)	927, 1274, 2092
SspI	AATATT	1 cut(s)	281
SspMI	CTAG	4 cut(s)	816, 945, 1395, 1691
StyD4I	CCNGG	4 cut(s)	271, 421, 595, 1891
StyI	CCWWGG	5 cut(s)	33, 656, 895, 986, 1205
TaaI	ACNGT	6 cut(s)	57, 722, 1473, 1489, 1798, 2003
TaqI	TCGA	5 cut(s)	123, 699, 969, 1115, 1491
TfiI	GAWTC	5 cut(s)	139, 199, 396, 426, 1493
Tru1I	TTAA	3 cut(s)	1010, 1611, 1950
Tru9I	TTAA	3 cut(s)	1010, 1611, 1950
TscAI	CASTG	6 cut(s)	652, 1077, 1258, 1342, 1368, 1492
TseFI	GTSAC	2 cut(s)	1699, 1737
TseI	GCWGC	4 cut(s)	461, 620, 1067, 1130
Tsp45I	GTSAC	2 cut(s)	1699, 1737
TspGWI	ACGGA	2 cut(s)	782, 1153
TspRI	CASTG	6 cut(s)	652, 1077, 1258, 1342, 1368, 1492
Van91I	CCANNNNNTGG	2 cut(s)	762, 1798
VneI	GTGCAC	2 cut(s)	591, 1661
VpaK11BI	GGWCC	7 cut(s)	362, 533, 569, 929, 1209, 1442, 1752
VspI	ATTAAT	1 cut(s)	1950
XagI	CCTNNNNNAGG	1 cut(s)	270
XapI	RAATTY	8 cut(s)	473, 563, 759, 794, 907, 1577, 1717, 2116
XceI	RCATGY	3 cut(s)	46, 892, 1508
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1118, 1799
XmiI	GTMKAC	3 cut(s)	788, 1107, 1645
XmnI	GAANNNNTTC	2 cut(s)	1455, 1810
XspI	CTAG	4 cut(s)	816, 945, 1395, 1691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.