AT1G02310

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
458133 .. 460831
2699 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02310.1

Sequence Viewer

Length: 1236 bp
ATGTTAAACATCTTACCGTTTTTCTTGTTCTTTCTTCCGTTTCTCATCGGAAACAACCGCATTTGCGTCGCCGTAAAGACAGGCTTTGTCGGGAGAAACGGCACGCAGTTCGTGTTGAACGGAGAACAAGTTTACTTAAACGGCTTCAATGCTTATTGGATGATGACCACCGCGGCTGACACGGCATCTAAAGGAAGAGCTACCGTCACGACGGCGCTCCGGCAAGCCTCCGCGGTGGGAATGAACGTCGCTAGGATTTGGGGTTTCAACGAAGGAGATTACATTCCTCTTCAGATCTCTCCTGGCTCCTATAGTGAAGACGTTTTCAAGGGGCTAGACTTTGTCGTCTATGAAGCTGGACGATTTAATATTAAATTGATAATTAGTTTAGTCAATAATTTCGAAGACTATGGAGGGAGAAAAAAGTACGTGGAATGGGCCGGTTTAGATGAACCGGATGAATTCTACACAAACTCAGCTGTCAAGCAATTCTACAAGAATCACGTGAAGACCGTGTTGACGAGGAAAAACACAATCACTGGTCGAATGTACAAAGATGACCCTACCATCTTCTCATGGGAACTCATCAACGAACCTCGCTGCAATGATTCCACTGCTTCGAATATTCTTCAGGATTGGGTGAAGGAAATGGCTAGTTATGTTAAGTCCATAGACTCAAACCATTTGCTGGAAATAGGGCTTGAAGGGTTCTACGGAGAATCTATACCGGAAAGAACGGTTTACAATCCCGGCGGAAGGGTCTTAACCGGTACAGATTTCATCACCAATAACCAAATTCCGGATATCGATTTCGCCACTATCCATATCTACCCGGATTCTTGGCTACCATTACAGAGCTCAAGAACAGGAGAACAAGATACATTTGTGGACAGATGGATCGGAGCACATATTGAAGACTGTGACAATATCATCAAGAAGCCTTTGCTGATAACAGAGTTTGGGAAATCTTCAAAGTACCCTGGTTTTAGCTTAGAGAAACGGAACAAGTTTTTCCAAAGAGTTTACGATGTTATCTACGACAGTGCAAGGGCTGGTGGTTCGTGTACTGGTGGTGTTTTCTGGCAGCTTACGACCAATAGAACTGGTCTGTTAGGTGATGGGTACGAGGTCTTTATGCAAGCAGGTCCTAATACTACTGCTCAGCTTATCGCCGACCAATCTAGTAAACTGAAAAACCTCAAGTATCCACCGTTGGTCACACATAGTGCAGAATGA

Protein Analysis

411

Amino Acids

46.29

Weight (kDa)

5.7

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH5_mannosidase PF26410 29 - 362 5.4e-53 GH family 5 beta-mannosidase-like
Cellulase PF00150 41 - 334 6e-11 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
Acc36I ACCTGC 1 cut(s) 1133
AccB7I CCANNNNNTGG 1 cut(s) 688
AccII CGCG 2 cut(s) 173, 233
AccIII TCCGGA 1 cut(s) 799
AciI CCGC 6 cut(s) 58, 171, 173, 231, 233, 753
AclWI GGATC 1 cut(s) 905
AcsI RAATTY 2 cut(s) 461, 795
AcuI CTGAAG 2 cut(s) 275, 614
AcvI CACGTG 1 cut(s) 505
AdeI CACNNNGTG 1 cut(s) 1226
AfaI GTAC 6 cut(s) 428, 551, 772, 977, 1066, 1124
AfiI CCNNNNNNNGG 3 cut(s) 688, 756, 799
AgeI ACCGGT 1 cut(s) 767
AgsI TTSAA 7 cut(s) 118, 148, 268, 328, 704, 914, 972
AjnI CCWGG 2 cut(s) 301, 979
AluBI AGCT 7 cut(s) 200, 356, 479, 858, 990, 1087, 1165
AluI AGCT 7 cut(s) 200, 356, 479, 858, 990, 1087, 1165
Alw21I GWGCWC 2 cut(s) 860, 907
AlwI GGATC 1 cut(s) 905
Aor13HI TCCGGA 1 cut(s) 799
AoxI GGCC 1 cut(s) 438
ApeKI GCWGC 2 cut(s) 600, 1084
ApoI RAATTY 2 cut(s) 461, 795
AsiGI ACCGGT 1 cut(s) 767
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 2 cut(s) 438, 1145
AsuC2I CCSGG 2 cut(s) 750, 833
AsuHPI GGTGA 3 cut(s) 652, 775, 1127
AsuII TTCGAA 2 cut(s) 402, 620
AvaII GGWCC 1 cut(s) 1145
BaeI ACNNNNGTAYC 2 cut(s) 870, 903
BanII GRGCYC 1 cut(s) 860
BbrPI CACGTG 1 cut(s) 505
BbsI GAAGAC 4 cut(s) 324, 411, 515, 921
Bbv12I GWGCWC 2 cut(s) 860, 907
BbvI GCAGC 2 cut(s) 587, 1096
BccI CCATC 3 cut(s) 575, 888, 1112
BceAI ACGGC 5 cut(s) 56, 115, 157, 198, 228
BcgI CGANNNNNNTGC 4 cut(s) 49, 83, 91, 125
BciT130I CCWGG 2 cut(s) 303, 981
BciVI GTATCC 1 cut(s) 1215
BcnI CCSGG 2 cut(s) 750, 833
BfaI CTAG 4 cut(s) 252, 335, 654, 1182
BfmI CTRYAG 1 cut(s) 310
BfoI RGCGCY 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 1133
BfuI GTATCC 1 cut(s) 1215
BglII AGATCT 1 cut(s) 294
BisI GCNGC 3 cut(s) 174, 601, 1085
BlpI GCTNAGC 1 cut(s) 1161
BlsI GCNGC 3 cut(s) 175, 602, 1086
Bme1390I CCNGG 4 cut(s) 303, 750, 833, 981
Bme18I GGWCC 1 cut(s) 1145
BmgT120I GGNCC 2 cut(s) 438, 1145
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 4 cut(s) 303, 750, 833, 981
BmsI GCATC 1 cut(s) 194
BpiI GAAGAC 4 cut(s) 324, 411, 515, 921
Bpu1102I GCTNAGC 1 cut(s) 1161
Bpu14I TTCGAA 2 cut(s) 402, 620
BpuEI CTTGAG 2 cut(s) 844, 1184
BpuMI CCSGG 2 cut(s) 750, 833
Bsa29I ATCGAT 1 cut(s) 807
BsaAI YACGTR 2 cut(s) 430, 505
BsaJI CCNNGG 3 cut(s) 171, 231, 979
BsaWI WCCGGW 4 cut(s) 454, 727, 767, 799
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 3 cut(s) 688, 756, 799
Bse118I RCCGGY 2 cut(s) 440, 767
Bse1I ACTGG 3 cut(s) 544, 1072, 1108
Bse3DI GCAATG 1 cut(s) 610
BseAI TCCGGA 1 cut(s) 799
BseBI CCWGG 2 cut(s) 303, 981
BseCI ATCGAT 1 cut(s) 807
BseDI CCNNGG 3 cut(s) 171, 231, 979
BseGI GGATG 2 cut(s) 165, 463
BseLI CCNNNNNNNGG 3 cut(s) 688, 756, 799
BseMI GCAATG 1 cut(s) 610
BseMII CTCAG 2 cut(s) 489, 1175
BseNI ACTGG 3 cut(s) 544, 1072, 1108
BseXI GCAGC 2 cut(s) 587, 1096
Bsh1236I CGCG 2 cut(s) 173, 233
BshFI GGCC 1 cut(s) 440
BshTI ACCGGT 1 cut(s) 767
BshVI ATCGAT 1 cut(s) 807
BsiHKAI GWGCWC 2 cut(s) 860, 907
BsiSI CCGG 8 cut(s) 220, 441, 455, 728, 750, 768, 800, 833
BslI CCNNNNNNNGG 3 cut(s) 688, 756, 799
BsnI GGCC 1 cut(s) 440
Bsp119I TTCGAA 2 cut(s) 402, 620
Bsp1286I GDGCHC 2 cut(s) 860, 907
Bsp13I TCCGGA 1 cut(s) 799
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 2 cut(s) 294, 897
Bsp1720I GCTNAGC 1 cut(s) 1161
BspACI CCGC 6 cut(s) 58, 171, 173, 231, 233, 753
BspANI GGCC 1 cut(s) 440
BspCNI CTCAG 2 cut(s) 488, 1174
BspDI ATCGAT 1 cut(s) 807
BspEI TCCGGA 1 cut(s) 799
BspFNI CGCG 2 cut(s) 173, 233
BspLI GGNNCC 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 1133
BspPI GGATC 1 cut(s) 905
BspQI GCTCTTC 1 cut(s) 190
BspT104I TTCGAA 2 cut(s) 402, 620
BsrDI GCAATG 1 cut(s) 610
BsrFI RCCGGY 2 cut(s) 440, 767
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 3 cut(s) 544, 1072, 1108
BssAI RCCGGY 2 cut(s) 440, 767
BssECI CCNNGG 3 cut(s) 171, 231, 979
BssMI GATC 2 cut(s) 294, 897
Bst2UI CCWGG 2 cut(s) 303, 981
Bst4CI ACNGT 7 cut(s) 18, 205, 514, 739, 920, 1043, 1212
Bst6I CTCTTC 2 cut(s) 190, 294
BstAUI TGTACA 1 cut(s) 549
BstBAI YACGTR 2 cut(s) 430, 505
BstBI TTCGAA 2 cut(s) 402, 620
BstC8I GCNNGC 3 cut(s) 104, 225, 1140
BstDEI CTNAG 3 cut(s) 475, 991, 1161
BstDSI CCRYGG 2 cut(s) 171, 231
BstF5I GGATG 2 cut(s) 165, 463
BstFNI CGCG 2 cut(s) 173, 233
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 297, 900
BstMBI GATC 2 cut(s) 294, 897
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 2 cut(s) 303, 981
BstSCI CCNGG 4 cut(s) 301, 748, 831, 979
BstSFI CTRYAG 1 cut(s) 310
BstUI CGCG 2 cut(s) 173, 233
BstV1I GCAGC 2 cut(s) 587, 1096
BstV2I GAAGAC 4 cut(s) 324, 411, 515, 921
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
Bsu15I ATCGAT 1 cut(s) 807
BsuI GTATCC 1 cut(s) 1215
BsuRI GGCC 1 cut(s) 440
BsuTUI ATCGAT 1 cut(s) 807
BtgI CCRYGG 2 cut(s) 171, 231
BtsCI GGATG 2 cut(s) 165, 463
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 3 cut(s) 537, 612, 1048
BveI ACCTGC 1 cut(s) 1133
Cac8I GCNNGC 3 cut(s) 104, 225, 1140
CfoI GCGC 1 cut(s) 217
Cfr10I RCCGGY 2 cut(s) 440, 767
Cfr13I GGNCC 2 cut(s) 438, 1145
Cfr42I CCGCGG 2 cut(s) 174, 234
ClaI ATCGAT 1 cut(s) 807
CseI GACGC 1 cut(s) 55
Csp6I GTAC 6 cut(s) 427, 550, 771, 976, 1065, 1123
CspAI ACCGGT 1 cut(s) 767
CviAII CATG 1 cut(s) 576
CviQI GTAC 6 cut(s) 427, 550, 771, 976, 1065, 1123
DdeI CTNAG 3 cut(s) 475, 991, 1161
DpnI GATC 2 cut(s) 296, 899
DpnII GATC 2 cut(s) 294, 897
DraIII CACNNNGTG 1 cut(s) 1226
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
Eam1104I CTCTTC 2 cut(s) 190, 294
EarI CTCTTC 2 cut(s) 190, 294
EciI GGCGGA 1 cut(s) 768
Ecl136II GAGCTC 1 cut(s) 858
Eco24I GRGCYC 1 cut(s) 860
Eco32I GATATC 1 cut(s) 805
Eco47I GGWCC 1 cut(s) 1145
Eco53kI GAGCTC 1 cut(s) 858
Eco57I CTGAAG 2 cut(s) 275, 614
Eco72I CACGTG 1 cut(s) 505
EcoICRI GAGCTC 1 cut(s) 858
EcoO109I RGGNCCY 1 cut(s) 1145
EcoRI GAATTC 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 301, 979
EcoRV GATATC 1 cut(s) 805
EcoT38I GRGCYC 1 cut(s) 860
FaeI CATG 1 cut(s) 579
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 1 cut(s) 575
Fnu4HI GCNGC 3 cut(s) 174, 601, 1085
FokI GGATG 2 cut(s) 172, 470
FriOI GRGCYC 1 cut(s) 860
Fsp4HI GCNGC 3 cut(s) 174, 601, 1085
FspBI CTAG 4 cut(s) 252, 335, 654, 1182
GlaI GCGC 1 cut(s) 216
GluI GCNGC 3 cut(s) 174, 601, 1085
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 1 cut(s) 440
HapII CCGG 8 cut(s) 220, 441, 455, 728, 750, 768, 800, 833
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 217
Hin1II CATG 1 cut(s) 579
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HinfI GANTC 5 cut(s) 499, 608, 674, 719, 836
HpaII CCGG 8 cut(s) 220, 441, 455, 728, 750, 768, 800, 833
HphI GGTGA 3 cut(s) 652, 775, 1127
Hpy166II GTNNAC 7 cut(s) 133, 519, 742, 889, 1024, 1065, 1187
Hpy188I TCNGA 3 cut(s) 50, 294, 902
Hpy188III TCNNGA 6 cut(s) 91, 208, 632, 800, 861, 934
Hpy8I GTNNAC 7 cut(s) 133, 519, 742, 889, 1024, 1065, 1187
Hpy99I CGWCG 3 cut(s) 71, 214, 251
HpyAV CCTTC 4 cut(s) 266, 637, 698, 750
HpyCH4III ACNGT 7 cut(s) 18, 205, 514, 739, 920, 1043, 1212
HpyCH4IV ACGT 4 cut(s) 246, 321, 429, 504
HpyCH4V TGCA 4 cut(s) 603, 1046, 1138, 1229
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 3 cut(s) 475, 991, 1161
HpySE526I ACGT 4 cut(s) 246, 321, 429, 504
Hsp92II CATG 1 cut(s) 579
HspAI GCGC 1 cut(s) 215
Kpn2I TCCGGA 1 cut(s) 799
KspI CCGCGG 2 cut(s) 174, 234
Kzo9I GATC 2 cut(s) 294, 897
LguI GCTCTTC 1 cut(s) 190
LmnI GCTCC 3 cut(s) 222, 311, 902
Lsp1109I GCAGC 2 cut(s) 587, 1096
LweI GCATC 1 cut(s) 194
MaeI CTAG 4 cut(s) 252, 335, 654, 1182
MaeII ACGT 4 cut(s) 246, 321, 429, 504
MaeIII GTNAC 3 cut(s) 205, 920, 1216
MalI GATC 2 cut(s) 296, 899
MboI GATC 2 cut(s) 294, 897
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 2 cut(s) 860, 907
MluCI AATT 6 cut(s) 374, 381, 397, 461, 488, 795
MlyI GAGTC 1 cut(s) 668
MnlI CCTC 7 cut(s) 238, 297, 407, 516, 606, 1120, 1208
MroI TCCGGA 1 cut(s) 799
MseI TTAA 6 cut(s) 5, 137, 366, 372, 663, 764
MspA1I CMGCKG 3 cut(s) 173, 233, 479
MspI CCGG 8 cut(s) 220, 441, 455, 728, 750, 768, 800, 833
MspR9I CCNGG 4 cut(s) 303, 750, 833, 981
MvaI CCWGG 2 cut(s) 303, 981
MvnI CGCG 2 cut(s) 173, 233
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 2 cut(s) 750, 833
NdeII GATC 2 cut(s) 294, 897
NlaIII CATG 1 cut(s) 579
NlaIV GGNNCC 1 cut(s) 307
NmuCI GTSAC 3 cut(s) 205, 920, 1216
NspV TTCGAA 2 cut(s) 402, 620
PciSI GCTCTTC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PfeI GAWTC 4 cut(s) 499, 608, 719, 836
PflFI GACNNNGTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 688
PinAI ACCGGT 1 cut(s) 767
PkrI GCNGC 3 cut(s) 175, 602, 1086
PleI GAGTC 1 cut(s) 668
PmaCI CACGTG 1 cut(s) 505
PmlI CACGTG 1 cut(s) 505
PpsI GAGTC 1 cut(s) 668
Ppu21I YACGTR 2 cut(s) 430, 505
PpuMI RGGWCCY 1 cut(s) 1145
Psp124BI GAGCTC 1 cut(s) 860
Psp5II RGGWCCY 1 cut(s) 1145
Psp6I CCWGG 2 cut(s) 301, 979
PspCI CACGTG 1 cut(s) 505
PspGI CCWGG 2 cut(s) 301, 979
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 2 cut(s) 438, 1145
PspPPI RGGWCCY 1 cut(s) 1145
PsuI RGATCY 1 cut(s) 294
PsyI GACNNNGTC 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 6 cut(s) 428, 551, 772, 977, 1066, 1124
RsaNI GTAC 6 cut(s) 427, 550, 771, 976, 1065, 1123
SacI GAGCTC 1 cut(s) 860
SacII CCGCGG 2 cut(s) 174, 234
SapI GCTCTTC 1 cut(s) 190
SaqAI TTAA 6 cut(s) 5, 137, 366, 372, 663, 764
SatI GCNGC 3 cut(s) 174, 601, 1085
Sau3AI GATC 2 cut(s) 294, 897
Sau96I GGNCC 2 cut(s) 438, 1145
SchI GAGTC 1 cut(s) 668
ScrFI CCNGG 4 cut(s) 303, 750, 833, 981
SduI GDGCHC 2 cut(s) 860, 907
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 310
Sfr303I CCGCGG 2 cut(s) 174, 234
SfuI TTCGAA 2 cut(s) 402, 620
SgrBI CCGCGG 2 cut(s) 174, 234
SinI GGWCC 1 cut(s) 1145
SmlI CTYRAG 2 cut(s) 859, 1199
SmoI CTYRAG 2 cut(s) 859, 1199
Sse9I AATT 6 cut(s) 374, 381, 397, 461, 488, 795
SsiI CCGC 6 cut(s) 58, 171, 173, 231, 233, 753
SspI AATATT 2 cut(s) 370, 625
SspMI CTAG 4 cut(s) 252, 335, 654, 1182
SstI GAGCTC 1 cut(s) 860
StyD4I CCNGG 4 cut(s) 301, 748, 831, 979
TaaI ACNGT 7 cut(s) 18, 205, 514, 739, 920, 1043, 1212
TaiI ACGT 4 cut(s) 249, 324, 432, 507
TaqI TCGA 4 cut(s) 402, 544, 620, 807
TasI AATT 6 cut(s) 374, 381, 397, 461, 488, 795
TatI WGTACW 2 cut(s) 549, 1064
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 4 cut(s) 499, 608, 719, 836
Tru1I TTAA 6 cut(s) 5, 137, 366, 372, 663, 764
Tru9I TTAA 6 cut(s) 5, 137, 366, 372, 663, 764
TscAI CASTG 3 cut(s) 544, 619, 1048
TseFI GTSAC 3 cut(s) 205, 920, 1216
TseI GCWGC 2 cut(s) 600, 1084
Tsp45I GTSAC 3 cut(s) 205, 920, 1216
TspDTI ATGAA 5 cut(s) 257, 366, 465, 474, 769
TspGWI ACGGA 4 cut(s) 27, 135, 729, 1015
TspRI CASTG 3 cut(s) 544, 619, 1048
Tth111I GACNNNGTC 1 cut(s) 341
Van91I CCANNNNNTGG 1 cut(s) 688
VpaK11BI GGWCC 1 cut(s) 1145
XapI RAATTY 2 cut(s) 461, 795
XspI CTAG 4 cut(s) 252, 335, 654, 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.