Rmu_sc0003937.1_g000001

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003937.1
Physical Location & Seq
Forward (+)
2994 .. 4919
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003937.1_g000001.1.cds

Sequence Viewer

Length: 1413 bp
atgcctttgttacgtacctgtattgttttatcttctttagtgttcctcaatatccagcagggaaattattgcagaggtgaaacccaggctacctctagtagttttgctcaaacaaaaggaaaccattttgttatgaatgagagatcattctacttgaatgggttcaatgcatattggatgatgtacatggcatctgacccctctacaagggccaaggtcacttctgcattcaaacaagcctccaagtatggtatgaacattgccagaacttgggctttcagcgatggcggtagctacagaccccttcagtcttctcctggttcctataacgaagacatgttcaagggattagactttgtgatctcagaagctagaaattatggtgtgcatgtgatactgagcttggtgaacaacttcaacgattatggggggaaaaagcaatatgtgctgtgggcaaaggaacgtggccaagccataaacaacgaagacgacttctataacaacactgttgtcaaaggctactataaagatcacgttaagactgttctcacgagaatcaactccattactggggtggcttacagggatgattcaaccattttttcttgggaattaatgaacgagcctcgttgtcaacttgatccctctggaacccttctccagcaatgggtgaaagaaatggctgctcacgtcaagtccattgatagtaaccatttactggagatagggcttgaaggattctatggtggaacaaccccggaaaagaagcagttcaatcctagtaacctagaatatgggtctgatttcatagccaataacttgattcccgagattgactttgcctcgattcatatatacgctgagcaatggttacgaggggcaagtgaagaggcacaagctgattttgtggacaaatgggtcggagtacacattgaagactgtaactcagtggtaagaaaaccactaattatgggggagtttggcaaatcttacaaactgccagggtacaccatagaaaagaggaacgcctacttcgaaaaactttacaacgcacaagctgattttgtggacaaatgggtcggagtacacattgaagactgtaactcagtggtaaaaaaaccactaattatgggggagtttggcaaatcttacaaactgccagggtacaccatagaaaagaggaacgcctacttcgaaaaactttacgacgtcgtctaccgcagcgcaagcagtaacggagcatgcacaggtgcgcttttctggcagctgcttgctcaaggaatggataacttcaaagacggatatgatgtcgttctggaggagagcccttccacggctagtgtgattgctcaacaatctcacaagctaatcgagttcactaggcaacatagtaatgttacaaaaagtacttga

Protein Analysis

470

Amino Acids

53.28

Weight (kDa)

6.24

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 917, 1076
AatII GACGTC 1 cut(s) 1212
AccB7I CCANNNNNTGG 2 cut(s) 270, 718
AccI GTMKAC 1 cut(s) 1215
AciI CCGC 2 cut(s) 288, 1219
AclWI GGATC 1 cut(s) 635
AcoI YGGCCR 1 cut(s) 466
AcuI CTGAAG 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 1209
AfaI GTAC 7 cut(s) 16, 185, 927, 1007, 1086, 1166, 1408
AfiI CCNNNNNNNGG 6 cut(s) 207, 270, 570, 667, 718, 1333
AflIII ACRYGT 1 cut(s) 336
AjiI CACGTC 1 cut(s) 691
AjnI CCWGG 4 cut(s) 84, 316, 1000, 1159
AluBI AGCT 7 cut(s) 294, 371, 402, 899, 1058, 1267, 1366
AluI AGCT 7 cut(s) 294, 371, 402, 899, 1058, 1267, 1366
AlwI GGATC 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 827
AoxI GGCC 2 cut(s) 210, 466
ApeKI GCWGC 4 cut(s) 683, 1221, 1264, 1267
AseI ATTAAT 1 cut(s) 614
Asp700I GAANNNNTTC 3 cut(s) 161, 413, 770
AspLEI GCGC 2 cut(s) 1226, 1255
AspS9I GGNCC 1 cut(s) 210
AsuC2I CCSGG 1 cut(s) 758
AsuHPI GGTGA 3 cut(s) 89, 418, 682
AsuII TTCGAA 2 cut(s) 1035, 1194
AvaI CYCGRG 1 cut(s) 827
BalI TGGCCA 1 cut(s) 468
BanII GRGCYC 1 cut(s) 1328
BauI CACGAG 1 cut(s) 550
BbsI GAAGAC 5 cut(s) 303, 339, 492, 942, 1101
BbvI GCAGC 4 cut(s) 670, 1233, 1254, 1276
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 1350
BciT130I CCWGG 4 cut(s) 86, 318, 1002, 1161
BcnI CCSGG 1 cut(s) 758
BfaI CTAG 6 cut(s) 96, 372, 780, 788, 1338, 1380
BfmI CTRYAG 1 cut(s) 295
BisI GCNGC 4 cut(s) 684, 1222, 1265, 1268
BlpI GCTNAGC 1 cut(s) 861
BlsI GCNGC 4 cut(s) 685, 1223, 1266, 1269
BmcAI AGTACT 1 cut(s) 1408
Bme1390I CCNGG 5 cut(s) 86, 318, 758, 1002, 1161
BmeT110I CYCGRG 1 cut(s) 827
BmgBI CACGTC 1 cut(s) 691
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 2 cut(s) 322, 652
BmrFI CCNGG 5 cut(s) 86, 318, 758, 1002, 1161
BmrI ACTGGG 1 cut(s) 579
BmsI GCATC 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 579
BpiI GAAGAC 5 cut(s) 303, 339, 492, 942, 1101
BpmI CTGGAG 3 cut(s) 644, 740, 1337
Bpu1102I GCTNAGC 1 cut(s) 861
Bpu14I TTCGAA 2 cut(s) 1035, 1194
BpuEI CTTGAG 1 cut(s) 1260
BpuMI CCSGG 1 cut(s) 758
BsaAI YACGTR 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 1209
BsaJI CCNNGG 6 cut(s) 84, 213, 756, 1001, 1160, 1332
Bsc4I CCNNNNNNNGG 6 cut(s) 207, 270, 570, 667, 718, 1333
Bse1I ACTGG 2 cut(s) 574, 723
Bse3DI GCAATG 3 cut(s) 258, 671, 872
BseBI CCWGG 4 cut(s) 86, 318, 1002, 1161
BseDI CCNNGG 6 cut(s) 84, 213, 756, 1001, 1160, 1332
BseGI GGATG 2 cut(s) 183, 592
BseLI CCNNNNNNNGG 6 cut(s) 207, 270, 570, 667, 718, 1333
BseMI GCAATG 3 cut(s) 258, 671, 872
BseMII CTCAG 5 cut(s) 378, 389, 852, 960, 1119
BseNI ACTGG 2 cut(s) 574, 723
BseRI GAGGAG 1 cut(s) 1334
BseXI GCAGC 4 cut(s) 670, 1233, 1254, 1276
BshFI GGCC 2 cut(s) 212, 468
BsiHKCI CYCGRG 1 cut(s) 827
BsiSI CCGG 1 cut(s) 758
BslI CCNNNNNNNGG 6 cut(s) 207, 270, 570, 667, 718, 1333
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 2 cut(s) 212, 468
BsoBI CYCGRG 1 cut(s) 827
Bsp119I TTCGAA 2 cut(s) 1035, 1194
Bsp1286I GDGCHC 1 cut(s) 1328
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 4 cut(s) 143, 360, 529, 640
Bsp1720I GCTNAGC 1 cut(s) 861
BspACI CCGC 2 cut(s) 288, 1219
BspANI GGCC 2 cut(s) 212, 468
BspCNI CTCAG 5 cut(s) 377, 390, 853, 959, 1118
BspLI GGNNCC 2 cut(s) 322, 652
BspPI GGATC 1 cut(s) 635
BspT104I TTCGAA 2 cut(s) 1035, 1194
BsrDI GCAATG 3 cut(s) 258, 671, 872
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 2 cut(s) 574, 723
BssECI CCNNGG 6 cut(s) 84, 213, 756, 1001, 1160, 1332
BssMI GATC 4 cut(s) 143, 360, 529, 640
BssNI GRCGYC 1 cut(s) 1209
BssSI CACGAG 1 cut(s) 550
BssT1I CCWWGG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 550
Bst2UI CCWGG 4 cut(s) 86, 318, 1002, 1161
Bst4CI ACNGT 4 cut(s) 508, 544, 941, 1100
Bst6I CTCTTC 1 cut(s) 882
BstACI GRCGYC 1 cut(s) 1209
BstAPI GCANNNNNTGC 1 cut(s) 445
BstAUI TGTACA 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 14
BstBI TTCGAA 2 cut(s) 1035, 1194
BstC8I GCNNGC 3 cut(s) 1228, 1243, 1272
BstDEI CTNAG 5 cut(s) 364, 398, 861, 946, 1105
BstDSI CCRYGG 1 cut(s) 1332
BstENI CCTNNNNNAGG 1 cut(s) 205
BstF5I GGATG 2 cut(s) 183, 592
BstHHI GCGC 2 cut(s) 1226, 1255
BstKTI GATC 4 cut(s) 146, 363, 532, 643
BstMBI GATC 4 cut(s) 143, 360, 529, 640
BstMWI GCNNNNNNNGC 3 cut(s) 445, 1227, 1261
BstNI CCWGG 4 cut(s) 86, 318, 1002, 1161
BstNSI RCATGY 3 cut(s) 340, 392, 1245
BstSCI CCNGG 5 cut(s) 84, 316, 756, 1000, 1159
BstSFI CTRYAG 1 cut(s) 295
BstSNI TACGTA 1 cut(s) 14
BstV1I GCAGC 4 cut(s) 670, 1233, 1254, 1276
BstV2I GAAGAC 5 cut(s) 303, 339, 492, 942, 1101
BsuRI GGCC 2 cut(s) 212, 468
BtgI CCRYGG 1 cut(s) 1332
BtgZI GCGATG 1 cut(s) 297
BtrI CACGTC 1 cut(s) 691
BtsCI GGATG 2 cut(s) 183, 592
BtsIMutI CAGTG 3 cut(s) 504, 954, 1113
Cac8I GCNNGC 3 cut(s) 1228, 1243, 1272
CfoI GCGC 2 cut(s) 1226, 1255
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 7 cut(s) 15, 184, 926, 1006, 1085, 1165, 1407
CviAII CATG 4 cut(s) 187, 337, 389, 1242
CviQI GTAC 7 cut(s) 15, 184, 926, 1006, 1085, 1165, 1407
DdeI CTNAG 5 cut(s) 364, 398, 861, 946, 1105
DpnI GATC 4 cut(s) 145, 362, 531, 642
DpnII GATC 4 cut(s) 143, 360, 529, 640
DrdI GACNNNNNNGTC 2 cut(s) 917, 1076
DseDI GACNNNNNNGTC 2 cut(s) 917, 1076
EaeI YGGCCR 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Eco105I TACGTA 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 1328
Eco57I CTGAAG 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 827
EcoNI CCTNNNNNAGG 1 cut(s) 205
EcoRII CCWGG 4 cut(s) 84, 316, 1000, 1159
EcoT14I CCWWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 1328
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 4 cut(s) 190, 340, 392, 1245
FatI CATG 4 cut(s) 186, 336, 388, 1241
FblI GTMKAC 1 cut(s) 1215
Fnu4HI GCNGC 4 cut(s) 684, 1222, 1265, 1268
FokI GGATG 2 cut(s) 190, 599
FriOI GRGCYC 1 cut(s) 1328
Fsp4HI GCNGC 4 cut(s) 684, 1222, 1265, 1268
FspBI CTAG 6 cut(s) 96, 372, 780, 788, 1338, 1380
GlaI GCGC 2 cut(s) 1225, 1254
GluI GCNGC 4 cut(s) 684, 1222, 1265, 1268
GsuI CTGGAG 3 cut(s) 644, 740, 1337
HaeIII GGCC 2 cut(s) 212, 468
HapII CCGG 1 cut(s) 758
HhaI GCGC 2 cut(s) 1226, 1255
Hin1I GRCGYC 1 cut(s) 1209
Hin1II CATG 4 cut(s) 190, 340, 392, 1245
Hin6I GCGC 2 cut(s) 1224, 1253
HinP1I GCGC 2 cut(s) 1224, 1253
HincII GTYRAC 1 cut(s) 635
HindII GTYRAC 1 cut(s) 635
HinfI GANTC 5 cut(s) 555, 590, 738, 823, 847
HpaII CCGG 1 cut(s) 758
HphI GGTGA 3 cut(s) 89, 418, 682
Hpy188I TCNGA 5 cut(s) 196, 367, 802, 923, 1082
Hpy188III TCNNGA 4 cut(s) 550, 648, 827, 1316
Hpy99I CGWCG 2 cut(s) 1211, 1214
HpyAV CCTTC 4 cut(s) 314, 665, 728, 1338
HpyCH4III ACNGT 4 cut(s) 508, 544, 941, 1100
HpyCH4IV ACGT 5 cut(s) 13, 463, 534, 690, 1209
HpyCH4V TGCA 5 cut(s) 72, 170, 227, 388, 1245
HpyF10VI GCNNNNNNNGC 3 cut(s) 445, 1227, 1261
HpyF3I CTNAG 5 cut(s) 364, 398, 861, 946, 1105
HpySE526I ACGT 5 cut(s) 13, 463, 534, 690, 1209
Hsp92I GRCGYC 1 cut(s) 1209
Hsp92II CATG 4 cut(s) 190, 340, 392, 1245
HspAI GCGC 2 cut(s) 1224, 1253
Kzo9I GATC 4 cut(s) 143, 360, 529, 640
LmnI GCTCC 1 cut(s) 1238
Lsp1109I GCAGC 4 cut(s) 670, 1233, 1254, 1276
LweI GCATC 1 cut(s) 200
MaeI CTAG 6 cut(s) 96, 372, 780, 788, 1338, 1380
MaeII ACGT 5 cut(s) 13, 463, 534, 690, 1209
MaeIII GTNAC 9 cut(s) 9, 217, 707, 782, 870, 941, 1100, 1232, 1396
MalI GATC 4 cut(s) 145, 362, 531, 642
MboI GATC 4 cut(s) 143, 360, 529, 640
MboII GAAGA 7 cut(s) 24, 303, 344, 497, 899, 947, 1106
MhlI GDGCHC 1 cut(s) 1328
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 5 cut(s) 64, 376, 611, 966, 1125
MluNI TGGCCA 1 cut(s) 468
MmeI TCCRAC 2 cut(s) 901, 1060
Mox20I TGGCCA 1 cut(s) 468
Mph1103I ATGCAT 1 cut(s) 172
MroXI GAANNNNTTC 3 cut(s) 161, 413, 770
MscI TGGCCA 1 cut(s) 468
MseI TTAA 2 cut(s) 537, 614
MslI CAYNNNNRTG 1 cut(s) 1392
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 1267
MspI CCGG 1 cut(s) 758
MspR9I CCNGG 5 cut(s) 86, 318, 758, 1002, 1161
Mva1269I GAATGC 1 cut(s) 227
MvaI CCWGG 4 cut(s) 86, 318, 1002, 1161
MwoI GCNNNNNNNGC 3 cut(s) 445, 1227, 1261
NciI CCSGG 1 cut(s) 758
NdeII GATC 4 cut(s) 143, 360, 529, 640
NlaIII CATG 4 cut(s) 190, 340, 392, 1245
NlaIV GGNNCC 2 cut(s) 322, 652
NmuCI GTSAC 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 3 cut(s) 340, 392, 1245
NspV TTCGAA 2 cut(s) 1035, 1194
PaeI GCATGC 1 cut(s) 1245
PciI ACATGT 1 cut(s) 336
PcsI WCGNNNNNNNCGW 2 cut(s) 1032, 1191
PctI GAATGC 1 cut(s) 227
PdmI GAANNNNTTC 3 cut(s) 161, 413, 770
PfeI GAWTC 5 cut(s) 555, 590, 738, 823, 847
PflFI GACNNNGTC 1 cut(s) 1211
PflMI CCANNNNNTGG 2 cut(s) 270, 718
PkrI GCNGC 4 cut(s) 685, 1223, 1266, 1269
Ppu21I YACGTR 1 cut(s) 14
PscI ACATGT 1 cut(s) 336
PshBI ATTAAT 1 cut(s) 614
Psp6I CCWGG 4 cut(s) 84, 316, 1000, 1159
PspGI CCWGG 4 cut(s) 84, 316, 1000, 1159
PspN4I GGNNCC 2 cut(s) 322, 652
PspPI GGNCC 1 cut(s) 210
PsyI GACNNNGTC 1 cut(s) 1211
PvuII CAGCTG 1 cut(s) 1267
RsaI GTAC 7 cut(s) 16, 185, 927, 1007, 1086, 1166, 1408
RsaNI GTAC 7 cut(s) 15, 184, 926, 1006, 1085, 1165, 1407
RseI CAYNNNNRTG 1 cut(s) 1392
SaqAI TTAA 2 cut(s) 537, 614
SatI GCNGC 4 cut(s) 684, 1222, 1265, 1268
Sau3AI GATC 4 cut(s) 143, 360, 529, 640
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 1408
ScrFI CCNGG 5 cut(s) 86, 318, 758, 1002, 1161
SduI GDGCHC 1 cut(s) 1328
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 295
SfuI TTCGAA 2 cut(s) 1035, 1194
SmiMI CAYNNNNRTG 1 cut(s) 1392
SmlI CTYRAG 1 cut(s) 1275
SmoI CTYRAG 1 cut(s) 1275
SnaBI TACGTA 1 cut(s) 14
SphI GCATGC 1 cut(s) 1245
Sse9I AATT 5 cut(s) 64, 376, 611, 966, 1125
SsiI CCGC 2 cut(s) 288, 1219
SspMI CTAG 6 cut(s) 96, 372, 780, 788, 1338, 1380
StyD4I CCNGG 5 cut(s) 84, 316, 756, 1000, 1159
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 4 cut(s) 508, 544, 941, 1100
TaiI ACGT 5 cut(s) 16, 466, 537, 693, 1212
TaqI TCGA 4 cut(s) 845, 1035, 1194, 1371
TasI AATT 5 cut(s) 64, 376, 611, 966, 1125
TatI WGTACW 4 cut(s) 183, 925, 1084, 1406
TfiI GAWTC 5 cut(s) 555, 590, 738, 823, 847
Tru1I TTAA 2 cut(s) 537, 614
Tru9I TTAA 2 cut(s) 537, 614
TscAI CASTG 3 cut(s) 511, 954, 1113
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 4 cut(s) 683, 1221, 1264, 1267
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 5 cut(s) 149, 269, 632, 796, 839
TspGWI ACGGA 2 cut(s) 1251, 1314
TspRI CASTG 3 cut(s) 511, 954, 1113
Tth111I GACNNNGTC 1 cut(s) 1211
Van91I CCANNNNNTGG 2 cut(s) 270, 718
VspI ATTAAT 1 cut(s) 614
XagI CCTNNNNNAGG 1 cut(s) 205
XceI RCATGY 3 cut(s) 340, 392, 1245
XcmI CCANNNNNNNNNTGG 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 1215
XmnI GAANNNNTTC 3 cut(s) 161, 413, 770
XspI CTAG 6 cut(s) 96, 372, 780, 788, 1338, 1380
ZraI GACGTC 1 cut(s) 1210
ZrmI AGTACT 1 cut(s) 1408
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.