Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005233

Physical Location & Seq

Genomic Coordinates Reverse (-)

62399054 .. 62400925

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G037810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGGGGGAAAAAGCAATATGCAGTGGGCAAAGGAACGTGGCCAAGCCATAAACAACGAAGACGACTTCTATAACAACACTGTTGTCAAAGGCTACTATAAAGATCACGTTAAGACTGTTCTCACGAGAATCAACTCCATTACTGGGGTGGCGTACAGGGATGATTCAACCATTTTTGCTTGGGAATTAATGAACGAGCCTCGTTGTCAACTTGATCCCTCTGGAACCCTTCTCCAGCAATGGGTGAAAGAAATGGCTGCTCACGTCAAGTCCATTGATAGTAACCATTTACTGGAGATAGGGCTTGAAGGATTCTATGGTGGAACAACCCCGGAAAAGAAGCAGTTCAATCCTAGTAACCTAGAATATGGGTCTGATTTCATAGCCAATAACTTGATTCCCGAGATTGACTTTGCCTCGATTCATATATACGCTGAGCAATGGTTACGAGGGGCAAGTGAAGAGGCACAAGCTGATTTTGTGGACAAATGGGTCGGAGTACACATTGAAGACTGTAACTCAGTGGTAAGAAAACCACTAATTATGGGGGAGTTTGGCAAATCTTACAAACTGCCAGGGTACACCATAGAAAAGAGGAACGCCTACTTCGAAAAAATTTACGACGTCGTCTACCGCAGCGCAAGCAGTAACGGAGCATGCACAGGTGCGCTTTTCTGGCAGCTGCTTGCTCAAGGAATGGATAACTTCAAAGACGGATATGATGTCGTTCTGGAGGAGAGCCCTTCCACGGCTAGTGTGATTGCTCAACAATCTCACAAGCTAATCGAGTTCACTAGGCAACATAGTAATGTCACAAAAAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

275

Amino Acids

31.08

Weight (kDa)

5.31

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	18 - 227	3.4e-31	GH family 5 beta-mannosidase-like
Cellulase	PF00150	45 - 202	1.9e-08	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02310 AT1G02310
fragaria_vesca	FvH4_6g08680 FvH4_6g36270 FvH4_6g36270
malus_domestica	MD09G1170400.v1.1 MD17G1156500.v1.1
prunus_persica	Prupe.3G028800_v2.0.a1
pyrus_communis	pycom09g08810
rosa_chinensis	RchiOBHm_Chr2g0148271 RchiOBHm_Chr5g0067931
rosa_laevigata	RLG00000020331 RLG00000035944
rosa_multiflora	Rmu_sc0003937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012680 Rroxscaffold_1G00013380 Rroxscaffold_2G00098950
rosa_rugosa	Rorug02G0405200 Rorug05G0386300
rosa_samantha	Rh2AG463800 Rh2BG476900 Rh2CG450600 Rh2DG485600 Rh5AG445500 Rh5BG462900 Rh5CG484800 Rh5DG476900
rosa_wichuraiana	Rw2G037810 Rw5G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AatII	GACGTC	1 cut(s)	627
AccB7I	CCANNNNNTGG	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	630
AciI	CCGC	1 cut(s)	634
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	615
AcyI	GRCGYC	1 cut(s)	624
AfaI	GTAC	4 cut(s)	155, 501, 581, 823
AfiI	CCNNNNNNNGG	4 cut(s)	144, 241, 292, 748
AgsI	TTSAA	5 cut(s)	168, 308, 349, 509, 709
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	3 cut(s)	473, 682, 781
AluI	AGCT	3 cut(s)	473, 682, 781
AlwI	GGATC	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	4 cut(s)	257, 636, 679, 682
ApoI	RAATTY	1 cut(s)	615
AseI	ATTAAT	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	2 cut(s)	641, 670
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	256
AsuII	TTCGAA	1 cut(s)	609
AvaI	CYCGRG	1 cut(s)	401
BalI	TGGCCA	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	743
BauI	CACGAG	1 cut(s)	124
BbsI	GAAGAC	2 cut(s)	66, 516
BbvI	GCAGC	4 cut(s)	244, 648, 669, 691
BceAI	ACGGC	1 cut(s)	765
BciT130I	CCWGG	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	332
BfaI	CTAG	4 cut(s)	354, 362, 753, 795
BisI	GCNGC	4 cut(s)	258, 637, 680, 683
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	4 cut(s)	259, 638, 681, 684
BmcAI	AGTACT	1 cut(s)	823
Bme1390I	CCNGG	2 cut(s)	332, 576
BmeT110I	CYCGRG	1 cut(s)	401
BmgBI	CACGTC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	332, 576
BmrI	ACTGGG	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	153
BpiI	GAAGAC	2 cut(s)	66, 516
BpmI	CTGGAG	3 cut(s)	218, 314, 752
Bpu1102I	GCTNAGC	1 cut(s)	435
Bpu14I	TTCGAA	1 cut(s)	609
BpuEI	CTTGAG	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	332
BsaHI	GRCGYC	1 cut(s)	624
BsaJI	CCNNGG	3 cut(s)	330, 575, 747
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 241, 292, 748
Bse1I	ACTGG	2 cut(s)	148, 297
Bse3DI	GCAATG	2 cut(s)	245, 446
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	3 cut(s)	330, 575, 747
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	4 cut(s)	144, 241, 292, 748
BseMI	GCAATG	2 cut(s)	245, 446
BseMII	CTCAG	2 cut(s)	426, 534
BseNI	ACTGG	2 cut(s)	148, 297
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	4 cut(s)	244, 648, 669, 691
BshFI	GGCC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	4 cut(s)	144, 241, 292, 748
BsnI	GGCC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	401
Bsp119I	TTCGAA	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	743
Bsp143I	GATC	2 cut(s)	103, 214
Bsp1720I	GCTNAGC	1 cut(s)	435
BspACI	CCGC	1 cut(s)	634
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	2 cut(s)	427, 533
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	609
BsrDI	GCAATG	2 cut(s)	245, 446
BsrI	ACTGG	2 cut(s)	148, 297
BssECI	CCNNGG	3 cut(s)	330, 575, 747
BssMI	GATC	2 cut(s)	103, 214
BssNI	GRCGYC	1 cut(s)	624
BssSI	CACGAG	1 cut(s)	124
Bst2BI	CACGAG	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	3 cut(s)	82, 118, 515
Bst6I	CTCTTC	1 cut(s)	456
BstACI	GRCGYC	1 cut(s)	624
BstBI	TTCGAA	1 cut(s)	609
BstC8I	GCNNGC	3 cut(s)	643, 658, 687
BstDEI	CTNAG	2 cut(s)	435, 520
BstDSI	CCRYGG	1 cut(s)	747
BstF5I	GGATG	1 cut(s)	166
BstHHI	GCGC	2 cut(s)	641, 670
BstKTI	GATC	2 cut(s)	106, 217
BstMBI	GATC	2 cut(s)	103, 214
BstMWI	GCNNNNNNNGC	2 cut(s)	642, 676
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	1 cut(s)	660
BstSCI	CCNGG	2 cut(s)	330, 574
BstV1I	GCAGC	4 cut(s)	244, 648, 669, 691
BstV2I	GAAGAC	2 cut(s)	66, 516
BsuRI	GGCC	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	747
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	3 cut(s)	29, 78, 528
Cac8I	GCNNGC	3 cut(s)	643, 658, 687
CfoI	GCGC	2 cut(s)	641, 670
Csp6I	GTAC	4 cut(s)	154, 500, 580, 822
CviAII	CATG	1 cut(s)	657
CviQI	GTAC	4 cut(s)	154, 500, 580, 822
DdeI	CTNAG	2 cut(s)	435, 520
DpnI	GATC	2 cut(s)	105, 216
DpnII	GATC	2 cut(s)	103, 214
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	743
Eco88I	CYCGRG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	574
EcoT38I	GRGCYC	1 cut(s)	743
FaeI	CATG	1 cut(s)	660
FatI	CATG	1 cut(s)	656
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	4 cut(s)	258, 637, 680, 683
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	743
Fsp4HI	GCNGC	4 cut(s)	258, 637, 680, 683
FspBI	CTAG	4 cut(s)	354, 362, 753, 795
GlaI	GCGC	2 cut(s)	640, 669
GluI	GCNGC	4 cut(s)	258, 637, 680, 683
GsuI	CTGGAG	3 cut(s)	218, 314, 752
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	332
HhaI	GCGC	2 cut(s)	641, 670
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	1 cut(s)	660
Hin6I	GCGC	2 cut(s)	639, 668
HinP1I	GCGC	2 cut(s)	639, 668
HincII	GTYRAC	1 cut(s)	209
HindII	GTYRAC	1 cut(s)	209
HinfI	GANTC	5 cut(s)	129, 164, 312, 397, 421
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	6 cut(s)	209, 484, 502, 582, 631, 792
Hpy188I	TCNGA	2 cut(s)	376, 497
Hpy188III	TCNNGA	4 cut(s)	124, 222, 401, 731
Hpy8I	GTNNAC	6 cut(s)	209, 484, 502, 582, 631, 792
Hpy99I	CGWCG	2 cut(s)	626, 629
HpyAV	CCTTC	3 cut(s)	239, 302, 753
HpyCH4III	ACNGT	3 cut(s)	82, 118, 515
HpyCH4IV	ACGT	4 cut(s)	37, 108, 264, 624
HpyCH4V	TGCA	2 cut(s)	22, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	642, 676
HpyF3I	CTNAG	2 cut(s)	435, 520
HpySE526I	ACGT	4 cut(s)	37, 108, 264, 624
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	1 cut(s)	660
HspAI	GCGC	2 cut(s)	639, 668
Kzo9I	GATC	2 cut(s)	103, 214
LmnI	GCTCC	1 cut(s)	653
Lsp1109I	GCAGC	4 cut(s)	244, 648, 669, 691
MaeI	CTAG	4 cut(s)	354, 362, 753, 795
MaeII	ACGT	4 cut(s)	37, 108, 264, 624
MaeIII	GTNAC	6 cut(s)	281, 356, 444, 515, 647, 811
MalI	GATC	2 cut(s)	105, 216
MboI	GATC	2 cut(s)	103, 214
MboII	GAAGA	3 cut(s)	71, 473, 521
MhlI	GDGCHC	1 cut(s)	743
MlsI	TGGCCA	1 cut(s)	42
MluCI	AATT	3 cut(s)	185, 540, 615
MluNI	TGGCCA	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	7 cut(s)	210, 229, 427, 443, 457, 588, 727
Mox20I	TGGCCA	1 cut(s)	42
MroXI	GAANNNNTTC	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	42
MseI	TTAA	2 cut(s)	111, 188
MslI	CAYNNNNRTG	1 cut(s)	807
Msp20I	TGGCCA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	2 cut(s)	332, 576
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	2 cut(s)	642, 676
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	2 cut(s)	103, 214
NlaIII	CATG	1 cut(s)	660
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	811
NspI	RCATGY	1 cut(s)	660
NspV	TTCGAA	1 cut(s)	609
PaeI	GCATGC	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PdmI	GAANNNNTTC	1 cut(s)	344
PfeI	GAWTC	5 cut(s)	129, 164, 312, 397, 421
PflFI	GACNNNGTC	1 cut(s)	626
PflMI	CCANNNNNTGG	1 cut(s)	292
PkrI	GCNGC	4 cut(s)	259, 638, 681, 684
PshBI	ATTAAT	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	626
PvuII	CAGCTG	1 cut(s)	682
RsaI	GTAC	4 cut(s)	155, 501, 581, 823
RsaNI	GTAC	4 cut(s)	154, 500, 580, 822
RseI	CAYNNNNRTG	1 cut(s)	807
SaqAI	TTAA	2 cut(s)	111, 188
SatI	GCNGC	4 cut(s)	258, 637, 680, 683
Sau3AI	GATC	2 cut(s)	103, 214
ScaI	AGTACT	1 cut(s)	823
ScrFI	CCNGG	2 cut(s)	332, 576
SduI	GDGCHC	1 cut(s)	743
SetI	ASST	9 cut(s)	40, 111, 267, 363, 475, 627, 667, 684, 783
SfuI	TTCGAA	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	807
SmlI	CTYRAG	1 cut(s)	690
SmoI	CTYRAG	1 cut(s)	690
SphI	GCATGC	1 cut(s)	660
Sse9I	AATT	3 cut(s)	185, 540, 615
SsiI	CCGC	1 cut(s)	634
SspMI	CTAG	4 cut(s)	354, 362, 753, 795
StyD4I	CCNGG	2 cut(s)	330, 574
TaaI	ACNGT	3 cut(s)	82, 118, 515
TaiI	ACGT	4 cut(s)	40, 111, 267, 627
TaqI	TCGA	3 cut(s)	419, 609, 786
TasI	AATT	3 cut(s)	185, 540, 615
TatI	WGTACW	2 cut(s)	499, 821
TfiI	GAWTC	5 cut(s)	129, 164, 312, 397, 421
Tru1I	TTAA	2 cut(s)	111, 188
Tru9I	TTAA	2 cut(s)	111, 188
TscAI	CASTG	3 cut(s)	29, 85, 528
TseFI	GTSAC	1 cut(s)	811
TseI	GCWGC	4 cut(s)	257, 636, 679, 682
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	3 cut(s)	206, 370, 413
TspGWI	ACGGA	2 cut(s)	666, 729
TspRI	CASTG	3 cut(s)	29, 85, 528
Tth111I	GACNNNGTC	1 cut(s)	626
Van91I	CCANNNNNTGG	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	188
XapI	RAATTY	1 cut(s)	615
XceI	RCATGY	1 cut(s)	660
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	630
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	4 cut(s)	354, 362, 753, 795
ZraI	GACGTC	1 cut(s)	625
ZrmI	AGTACT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.