FvH4_6g36270

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
28518723 .. 28521356
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36270.t1

Sequence Viewer

Length: 1257 bp
ATGAGTTGGTTTCGTACCTGCTGTATTGTTTTATCTTCTTTAGTGTTCTTGAATATCAAACCGGGAAATTATTGCAGAGGTGAAACCCAGGCTGCCTCTAGTAGTTTTGCTCAAACACAAGGAAACCATTTTTTCATGAATGGGAGATCATTCTACTTGAATGGGTTCAATGCATATTGGATGATGTACATGGCTTCTGACCCCTATACTAGAGCCAAGGTCACTTCTGTATTCCAACAAGCCTCCAGGTATGGCATGAACATTGCCAGAACTTGGGCTTTCAGCGATGGCGTCAGCTACAGACCTCTTCAGTCTTCTCCTGGCTCCTACAATGAAGACATGTTCAAGGGATTGGACTTTGTGATCTCAGAAGCTAGAAATTACGGTGTGCATGTGATACTGAGCTTGGTGAACAACTTCGACGATTATGGAGGAAGAAAGCAATATGTGCAGTGGGCAAAAGAACGTGGCCAAGCCATCAACAACGATGACGACTTCTATAACAACACTGTTGTAAAAGGCTACTATAAAGATCACGTTAAGACTGTGCTCACGAGAATCAACTCCATTACTAGGGTGGCTTACAAGGATGACACAACCATTTTTGCTTGGGAATTAATGAACGAGCCTCGTTGTCAACTTGATCCCTCTGGAAACCTTCTTCAGCAATGGGTGAAAGAAATGGCTGCTCATGTTAAGTCCATAGATAGTAACCATTTACTGGAGATAGGGCTTGAAGGATTCTATGGTGGAACAACCCCGGAAAAGAAGCAGTTCAATCCTAGTAATCTAGAATATGGCTCTGATTTCATAGCCAACAACTTGATTCCGGAGATCGACTTTGCCTCGATTCATATATACGCCGAGCAATGGTTACAAGGAGCAAGTGAAGAGGCACAAGCTGATTTTGTGGACAAATGGGTTAGAGTACACATTGAAGACTGTAACTCGGTGGTAAGGAAACCACTAATAATCGGGGAGTTTGGCAAATCTTACAAATTGCCAGGGTACACCGTAGAGAAGAGGAACACCTACTTCGGAAAACTTTACGACGTCATCTACGGCAGCGCAAGCAGTGACGGAGCATGCGCAGGTGGGCTTTTCTGGCAGCTGCTTGCTCAAGGAATGGACAACGTCAGAGACGGATATGACGTCGTTCTGGAGGAGAGCCCTTCCACGGCTAGTGTGATTGCTCAACAGTCTCACAAGCTAACCGAGTTAACTAGGCATGATAGTAATGTTACAAAGACTACATGA

Protein Analysis

419

Amino Acids

47.36

Weight (kDa)

5.76

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH5_mannosidase PF26410 35 - 370 8.6e-50 GH family 5 beta-mannosidase-like
Cellulase PF00150 49 - 335 8.5e-14 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1082
AatII GACGTC 2 cut(s) 1056, 1155
Acc16I TGCGCA 1 cut(s) 1090
Acc36I ACCTGC 2 cut(s) 26, 1082
AccB7I CCANNNNNTGG 2 cut(s) 273, 721
AccIII TCCGGA 1 cut(s) 829
AclWI GGATC 1 cut(s) 638
AcoI YGGCCR 1 cut(s) 469
AcuI CTGAAG 2 cut(s) 293, 647
AcyI GRCGYC 3 cut(s) 291, 1053, 1152
AfaI GTAC 4 cut(s) 16, 188, 930, 1010
AfiI CCNNNNNNNGG 5 cut(s) 273, 573, 721, 870, 1177
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 7 cut(s) 52, 160, 169, 346, 737, 778, 938
AjnI CCWGG 4 cut(s) 87, 245, 319, 1003
AluBI AGCT 6 cut(s) 297, 374, 405, 902, 1111, 1210
AluI AGCT 6 cut(s) 297, 374, 405, 902, 1111, 1210
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 2 cut(s) 1134, 1206
AlwI GGATC 1 cut(s) 638
Aor13HI TCCGGA 1 cut(s) 829
AoxI GGCC 1 cut(s) 469
ApeKI GCWGC 5 cut(s) 92, 686, 1065, 1108, 1111
AseI ATTAAT 1 cut(s) 617
Asp700I GAANNNNTTC 3 cut(s) 164, 416, 773
AspLEI GCGC 2 cut(s) 1070, 1091
AsuC2I CCSGG 2 cut(s) 63, 761
AsuHPI GGTGA 3 cut(s) 92, 421, 685
BalI TGGCCA 1 cut(s) 471
BanII GRGCYC 1 cut(s) 1172
BauI CACGAG 1 cut(s) 553
BbsI GAAGAC 3 cut(s) 306, 342, 945
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 5 cut(s) 79, 673, 1077, 1098, 1120
BccI CCATC 2 cut(s) 281, 485
BceAI ACGGC 2 cut(s) 1078, 1194
BciT130I CCWGG 4 cut(s) 89, 247, 321, 1005
BcnI CCSGG 2 cut(s) 63, 761
BcoDI GTCTC 2 cut(s) 1134, 1206
BfaI CTAG 8 cut(s) 99, 210, 375, 573, 783, 791, 1182, 1224
BfmI CTRYAG 1 cut(s) 298
BfuAI ACCTGC 2 cut(s) 26, 1082
BisI GCNGC 5 cut(s) 93, 687, 1066, 1109, 1112
BlsI GCNGC 5 cut(s) 94, 688, 1067, 1110, 1113
Bme1390I CCNGG 6 cut(s) 63, 89, 247, 321, 761, 1005
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 6 cut(s) 63, 89, 247, 321, 761, 1005
BpiI GAAGAC 3 cut(s) 306, 342, 945
BpmI CTGGAG 3 cut(s) 229, 743, 1181
BpuEI CTTGAG 1 cut(s) 1104
BpuMI CCSGG 2 cut(s) 63, 761
BsaHI GRCGYC 3 cut(s) 291, 1053, 1152
BsaJI CCNNGG 5 cut(s) 87, 216, 759, 1004, 1176
BsaWI WCCGGW 1 cut(s) 829
Bsc4I CCNNNNNNNGG 5 cut(s) 273, 573, 721, 870, 1177
Bse1I ACTGG 1 cut(s) 726
Bse3DI GCAATG 3 cut(s) 261, 674, 875
BseAI TCCGGA 1 cut(s) 829
BseBI CCWGG 4 cut(s) 89, 247, 321, 1005
BseDI CCNNGG 5 cut(s) 87, 216, 759, 1004, 1176
BseGI GGATG 2 cut(s) 186, 595
BseLI CCNNNNNNNGG 5 cut(s) 273, 573, 721, 870, 1177
BseMI GCAATG 3 cut(s) 261, 674, 875
BseMII CTCAG 2 cut(s) 381, 392
BseNI ACTGG 1 cut(s) 726
BseRI GAGGAG 1 cut(s) 1178
BseXI GCAGC 5 cut(s) 79, 673, 1077, 1098, 1120
BsgI GTGCAG 1 cut(s) 470
BshFI GGCC 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 552
BsiSI CCGG 3 cut(s) 62, 761, 830
BslI CCNNNNNNNGG 5 cut(s) 273, 573, 721, 870, 1177
BsmAI GTCTC 2 cut(s) 1134, 1206
BsmBI CGTCTC 1 cut(s) 1134
BsnI GGCC 1 cut(s) 471
Bsp1286I GDGCHC 2 cut(s) 552, 1172
Bsp13I TCCGGA 1 cut(s) 829
Bsp1407I TGTACA 1 cut(s) 186
Bsp143I GATC 5 cut(s) 146, 363, 532, 643, 834
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 2 cut(s) 380, 393
BspEI TCCGGA 1 cut(s) 829
BspHI TCATGA 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 325
BspMI ACCTGC 2 cut(s) 26, 1082
BspPI GGATC 1 cut(s) 638
BsrDI GCAATG 3 cut(s) 261, 674, 875
BsrGI TGTACA 1 cut(s) 186
BsrI ACTGG 1 cut(s) 726
BssECI CCNNGG 5 cut(s) 87, 216, 759, 1004, 1176
BssMI GATC 5 cut(s) 146, 363, 532, 643, 834
BssNI GRCGYC 3 cut(s) 291, 1053, 1152
BssSI CACGAG 1 cut(s) 553
BssT1I CCWWGG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 553
Bst2UI CCWGG 4 cut(s) 89, 247, 321, 1005
Bst4CI ACNGT 6 cut(s) 386, 511, 547, 944, 1015, 1200
Bst6I CTCTTC 3 cut(s) 312, 885, 1016
BstACI GRCGYC 3 cut(s) 291, 1053, 1152
BstAPI GCANNNNNTGC 1 cut(s) 448
BstAUI TGTACA 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 1072, 1087, 1116
BstDEI CTNAG 2 cut(s) 367, 401
BstDSI CCRYGG 1 cut(s) 1176
BstF5I GGATG 2 cut(s) 186, 595
BstHHI GCGC 2 cut(s) 1070, 1091
BstKTI GATC 5 cut(s) 149, 366, 535, 646, 837
BstMAI GTCTC 2 cut(s) 1134, 1206
BstMBI GATC 5 cut(s) 146, 363, 532, 643, 834
BstMWI GCNNNNNNNGC 3 cut(s) 448, 1071, 1105
BstNI CCWGG 4 cut(s) 89, 247, 321, 1005
BstNSI RCATGY 3 cut(s) 343, 395, 1089
BstSCI CCNGG 6 cut(s) 61, 87, 245, 319, 759, 1003
BstSFI CTRYAG 1 cut(s) 298
BstV1I GCAGC 5 cut(s) 79, 673, 1077, 1098, 1120
BstV2I GAAGAC 3 cut(s) 306, 342, 945
BsuRI GGCC 1 cut(s) 471
BtgI CCRYGG 1 cut(s) 1176
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 2 cut(s) 186, 595
BtsI GCAGTG 2 cut(s) 458, 1081
BtsIMutI CAGTG 3 cut(s) 458, 507, 1081
BveI ACCTGC 2 cut(s) 26, 1082
Cac8I GCNNGC 3 cut(s) 1072, 1087, 1116
CciI TCATGA 1 cut(s) 135
CfoI GCGC 2 cut(s) 1070, 1091
CseI GACGC 1 cut(s) 280
Csp6I GTAC 4 cut(s) 15, 187, 929, 1009
CviAII CATG 9 cut(s) 136, 190, 256, 340, 392, 692, 1086, 1229, 1254
CviQI GTAC 4 cut(s) 15, 187, 929, 1009
DdeI CTNAG 2 cut(s) 367, 401
DpnI GATC 5 cut(s) 148, 365, 534, 645, 836
DpnII GATC 5 cut(s) 146, 363, 532, 643, 834
EaeI YGGCCR 1 cut(s) 469
Eam1104I CTCTTC 3 cut(s) 312, 885, 1016
EarI CTCTTC 3 cut(s) 312, 885, 1016
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 1172
Eco57I CTGAAG 2 cut(s) 293, 647
EcoRII CCWGG 4 cut(s) 87, 245, 319, 1003
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 1172
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 1134
FaeI CATG 9 cut(s) 139, 193, 259, 343, 395, 695, 1089, 1232, 1257
FatI CATG 9 cut(s) 135, 189, 255, 339, 391, 691, 1085, 1228, 1253
Fnu4HI GCNGC 5 cut(s) 93, 687, 1066, 1109, 1112
FokI GGATG 2 cut(s) 193, 602
FriOI GRGCYC 1 cut(s) 1172
Fsp4HI GCNGC 5 cut(s) 93, 687, 1066, 1109, 1112
FspBI CTAG 8 cut(s) 99, 210, 375, 573, 783, 791, 1182, 1224
FspI TGCGCA 1 cut(s) 1090
GlaI GCGC 2 cut(s) 1069, 1090
GluI GCNGC 5 cut(s) 93, 687, 1066, 1109, 1112
GsuI CTGGAG 3 cut(s) 229, 743, 1181
HaeIII GGCC 1 cut(s) 471
HapII CCGG 3 cut(s) 62, 761, 830
HgaI GACGC 1 cut(s) 280
HhaI GCGC 2 cut(s) 1070, 1091
Hin1I GRCGYC 3 cut(s) 291, 1053, 1152
Hin1II CATG 9 cut(s) 139, 193, 259, 343, 395, 695, 1089, 1232, 1257
Hin6I GCGC 2 cut(s) 1068, 1089
HinP1I GCGC 2 cut(s) 1068, 1089
HincII GTYRAC 2 cut(s) 638, 1221
HindII GTYRAC 2 cut(s) 638, 1221
HinfI GANTC 4 cut(s) 558, 741, 826, 850
HpaI GTTAAC 1 cut(s) 1221
HpaII CCGG 3 cut(s) 62, 761, 830
HphI GGTGA 3 cut(s) 92, 421, 685
Hpy166II GTNNAC 6 cut(s) 412, 638, 913, 931, 1011, 1221
Hpy188I TCNGA 5 cut(s) 199, 370, 805, 1040, 1139
Hpy188III TCNNGA 7 cut(s) 49, 136, 553, 651, 791, 830, 1160
Hpy8I GTNNAC 6 cut(s) 412, 638, 913, 931, 1011, 1221
Hpy99I CGWCG 3 cut(s) 425, 1055, 1157
HpyAV CCTTC 3 cut(s) 668, 731, 1182
HpyCH4III ACNGT 6 cut(s) 386, 511, 547, 944, 1015, 1200
HpyCH4IV ACGT 5 cut(s) 466, 537, 1053, 1134, 1152
HpyCH4V TGCA 4 cut(s) 75, 173, 391, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 448, 1071, 1105
HpyF3I CTNAG 2 cut(s) 367, 401
HpySE526I ACGT 5 cut(s) 466, 537, 1053, 1134, 1152
Hsp92I GRCGYC 3 cut(s) 291, 1053, 1152
Hsp92II CATG 9 cut(s) 139, 193, 259, 343, 395, 695, 1089, 1232, 1257
HspAI GCGC 2 cut(s) 1068, 1089
Kpn2I TCCGGA 1 cut(s) 829
KspAI GTTAAC 1 cut(s) 1221
Kzo9I GATC 5 cut(s) 146, 363, 532, 643, 834
LmnI GCTCC 3 cut(s) 329, 881, 1082
Lsp1109I GCAGC 5 cut(s) 79, 673, 1077, 1098, 1120
MaeI CTAG 8 cut(s) 99, 210, 375, 573, 783, 791, 1182, 1224
MaeII ACGT 5 cut(s) 466, 537, 1053, 1134, 1152
MaeIII GTNAC 6 cut(s) 220, 710, 873, 944, 1076, 1240
MalI GATC 5 cut(s) 148, 365, 534, 645, 836
MboI GATC 5 cut(s) 146, 363, 532, 643, 834
MboII GAAGA 9 cut(s) 27, 299, 306, 347, 447, 653, 902, 950, 1033
MhlI GDGCHC 2 cut(s) 552, 1172
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 4 cut(s) 67, 379, 614, 998
MluNI TGGCCA 1 cut(s) 471
MmeI TCCRAC 1 cut(s) 259
Mox20I TGGCCA 1 cut(s) 471
Mph1103I ATGCAT 1 cut(s) 175
MroI TCCGGA 1 cut(s) 829
MroXI GAANNNNTTC 3 cut(s) 164, 416, 773
MscI TGGCCA 1 cut(s) 471
MseI TTAA 4 cut(s) 540, 617, 696, 1220
Msp20I TGGCCA 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 1111
MspI CCGG 3 cut(s) 62, 761, 830
MspR9I CCNGG 6 cut(s) 63, 89, 247, 321, 761, 1005
MvaI CCWGG 4 cut(s) 89, 247, 321, 1005
MwoI GCNNNNNNNGC 3 cut(s) 448, 1071, 1105
NciI CCSGG 2 cut(s) 63, 761
NdeII GATC 5 cut(s) 146, 363, 532, 643, 834
NlaIII CATG 9 cut(s) 139, 193, 259, 343, 395, 695, 1089, 1232, 1257
NlaIV GGNNCC 1 cut(s) 325
NmeAIII GCCGAG 1 cut(s) 889
NmuCI GTSAC 2 cut(s) 220, 1076
NsbI TGCGCA 1 cut(s) 1090
NsiI ATGCAT 1 cut(s) 175
NspI RCATGY 3 cut(s) 343, 395, 1089
PaeI GCATGC 1 cut(s) 1089
PagI TCATGA 1 cut(s) 135
PaqCI CACCTGC 1 cut(s) 1082
PciI ACATGT 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 1149
PdmI GAANNNNTTC 3 cut(s) 164, 416, 773
PfeI GAWTC 4 cut(s) 558, 741, 826, 850
PflFI GACNNNGTC 1 cut(s) 1133
PflMI CCANNNNNTGG 2 cut(s) 273, 721
PkrI GCNGC 5 cut(s) 94, 688, 1067, 1110, 1113
PscI ACATGT 1 cut(s) 339
PshBI ATTAAT 1 cut(s) 617
Psp6I CCWGG 4 cut(s) 87, 245, 319, 1003
PspGI CCWGG 4 cut(s) 87, 245, 319, 1003
PspN4I GGNNCC 1 cut(s) 325
PsyI GACNNNGTC 1 cut(s) 1133
PvuII CAGCTG 1 cut(s) 1111
RsaI GTAC 4 cut(s) 16, 188, 930, 1010
RsaNI GTAC 4 cut(s) 15, 187, 929, 1009
SaqAI TTAA 4 cut(s) 540, 617, 696, 1220
SatI GCNGC 5 cut(s) 93, 687, 1066, 1109, 1112
Sau3AI GATC 5 cut(s) 146, 363, 532, 643, 834
ScrFI CCNGG 6 cut(s) 63, 89, 247, 321, 761, 1005
SduI GDGCHC 2 cut(s) 552, 1172
SfcI CTRYAG 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 1119
SmoI CTYRAG 1 cut(s) 1119
SphI GCATGC 1 cut(s) 1089
Sse9I AATT 4 cut(s) 67, 379, 614, 998
SspMI CTAG 8 cut(s) 99, 210, 375, 573, 783, 791, 1182, 1224
StyD4I CCNGG 6 cut(s) 61, 87, 245, 319, 759, 1003
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 6 cut(s) 386, 511, 547, 944, 1015, 1200
TaiI ACGT 5 cut(s) 469, 540, 1056, 1137, 1155
TaqI TCGA 3 cut(s) 420, 837, 848
TasI AATT 4 cut(s) 67, 379, 614, 998
TatI WGTACW 2 cut(s) 186, 928
TfiI GAWTC 4 cut(s) 558, 741, 826, 850
Tru1I TTAA 4 cut(s) 540, 617, 696, 1220
Tru9I TTAA 4 cut(s) 540, 617, 696, 1220
TscAI CASTG 3 cut(s) 458, 514, 1081
TseFI GTSAC 2 cut(s) 220, 1076
TseI GCWGC 5 cut(s) 92, 686, 1065, 1108, 1111
Tsp45I GTSAC 2 cut(s) 220, 1076
TspDTI ATGAA 7 cut(s) 124, 152, 272, 348, 635, 799, 842
TspGWI ACGGA 2 cut(s) 1095, 1158
TspRI CASTG 3 cut(s) 458, 514, 1081
Tth111I GACNNNGTC 1 cut(s) 1133
Van91I CCANNNNNTGG 2 cut(s) 273, 721
VspI ATTAAT 1 cut(s) 617
XbaI TCTAGA 1 cut(s) 790
XceI RCATGY 3 cut(s) 343, 395, 1089
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XmnI GAANNNNTTC 3 cut(s) 164, 416, 773
XspI CTAG 8 cut(s) 99, 210, 375, 573, 783, 791, 1182, 1224
ZraI GACGTC 2 cut(s) 1054, 1153
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.