RLG00000020331

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
63785729 .. 63787303
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020331

Sequence Viewer

Length: 1122 bp
ATGAATGGGAGATCATTCTACTTGAATGGGTTCAATGCATATTGGATGATGTACATGGCATCTGATCCCTCTACAAGGACCAAGGTCACTTCTGCATTCAAACAAGCCTCCAAGTATGGTATGAACATTGTCAGAACTTGGGCTTTCAGCGATGGCGGTAGCTACAGACCCCTTCAGTCCTCTCCTGGTTCCTATAACGAAGACATGTTCAAGGGATTAGACTTTGTGATCTCAGAAGCTAGAAATTATGGTGCGCATGTGATACTGAGCTTAGTGAACAACTTCGACGATTATGGGGGGAAAAAGCAATATGTGCAGTGGGCAAAGGAACGTGGCCAAGCCATAAACAACGAAGACGACTTCTATAACAACACTGTTGTCAAAGGCTACTATAAAGATCACGTTAAGACTGTTCTCACGAGAATCAACTCCATTACTGGGGTGGCTTACAGGGACGATTCAACCATTTTTGCTTGGGAATTAATGAACGAGCCTCGTTGTCAACTTGATCCCTCTGGAACCCTTCTCCAGCAATGGGTGAAAGAAATGGCTGCTCACGTTAAGTCCATTGATAGTAACCATTTACTGGAGATAGGGCTTGAAGGATTCTATGGTGGAACAACCCCGGAAAAGAAGCAGTTCAATCCTAGTAACCTAGAATATGGGTCTGATTTCATAGCCAACAACTTGATTCCCGAGATTGACTTTGCCTCGATTCATATATACGCTGAGCAATGGTTACGAGGGGCAAGTGAAGAGGCACAAGCTGATTTTGTGGACAAATGGGTCGGAGTACACATTGAAGACTGTAACTCAGTGGTAAGAAAACCACTAATTATGGGGGAGTTTGGCAAATCTTACAAACTGCCAGGGTACACCATAGAAAAGAGGAACGCCTACTTCGAAAAACTTTACGACGTCGTCTACCGCAGCGCAAGCAGTAACGGAGCATGCACAGGTGGGCTTTTCTGGCAGCTGCTTGCTCAAGGAATGGATAACTTCAAAGACGGATATGATGTCGTTCTGGAGGAGAGCCCTTCCACGGCTAGTGTGATTGCTCAACAATCTCACAAGCTAATCGAGTTAACTAGGCAAGATAGTAATGTTACAAAAAGTACTTGA

Protein Analysis

374

Amino Acids

42.2

Weight (kDa)

5.48

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH5_mannosidase PF26410 2 - 325 4.3e-48 GH family 5 beta-mannosidase-like
Cellulase PF00150 4 - 300 1.4e-14 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 785
AatII GACGTC 1 cut(s) 921
Acc16I TGCGCA 1 cut(s) 255
AccB7I CCANNNNNTGG 1 cut(s) 586
AccI GTMKAC 1 cut(s) 924
AciI CCGC 2 cut(s) 156, 928
AclWI GGATC 2 cut(s) 59, 503
AcoI YGGCCR 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 918
AfaI GTAC 4 cut(s) 53, 795, 875, 1117
AfiI CCNNNNNNNGG 5 cut(s) 75, 438, 535, 586, 1042
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 9 cut(s) 25, 34, 100, 211, 462, 602, 643, 803, 1003
AjnI CCWGG 2 cut(s) 184, 868
AluBI AGCT 6 cut(s) 162, 239, 270, 767, 976, 1075
AluI AGCT 6 cut(s) 162, 239, 270, 767, 976, 1075
AlwI GGATC 2 cut(s) 59, 503
Ama87I CYCGRG 1 cut(s) 695
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 4 cut(s) 551, 930, 973, 976
AseI ATTAAT 1 cut(s) 482
Asp700I GAANNNNTTC 3 cut(s) 29, 281, 638
AspLEI GCGC 2 cut(s) 256, 935
AspS9I GGNCC 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 1 cut(s) 550
AsuII TTCGAA 1 cut(s) 903
AvaI CYCGRG 1 cut(s) 695
AvaII GGWCC 1 cut(s) 78
BalI TGGCCA 1 cut(s) 336
BanII GRGCYC 1 cut(s) 1037
BauI CACGAG 1 cut(s) 418
BbsI GAAGAC 3 cut(s) 207, 360, 810
BbvI GCAGC 4 cut(s) 538, 942, 963, 985
BccI CCATC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 1059
BciT130I CCWGG 2 cut(s) 186, 870
BcnI CCSGG 1 cut(s) 626
BfaI CTAG 5 cut(s) 240, 648, 656, 1047, 1089
BfmI CTRYAG 1 cut(s) 163
BisI GCNGC 4 cut(s) 552, 931, 974, 977
BlpI GCTNAGC 1 cut(s) 729
BlsI GCNGC 4 cut(s) 553, 932, 975, 978
BmcAI AGTACT 1 cut(s) 1117
Bme1390I CCNGG 3 cut(s) 186, 626, 870
Bme18I GGWCC 1 cut(s) 78
BmeT110I CYCGRG 1 cut(s) 695
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 2 cut(s) 190, 520
BmrFI CCNGG 3 cut(s) 186, 626, 870
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 447
BoxI GACNNNNGTC 1 cut(s) 83
BpiI GAAGAC 3 cut(s) 207, 360, 810
BpmI CTGGAG 3 cut(s) 512, 608, 1046
Bpu1102I GCTNAGC 1 cut(s) 729
Bpu14I TTCGAA 1 cut(s) 903
BpuEI CTTGAG 1 cut(s) 969
BpuMI CCSGG 1 cut(s) 626
BsaHI GRCGYC 1 cut(s) 918
BsaJI CCNNGG 4 cut(s) 81, 624, 869, 1041
Bsc4I CCNNNNNNNGG 5 cut(s) 75, 438, 535, 586, 1042
Bse1I ACTGG 2 cut(s) 442, 591
Bse3DI GCAATG 2 cut(s) 539, 740
BseBI CCWGG 2 cut(s) 186, 870
BseDI CCNNGG 4 cut(s) 81, 624, 869, 1041
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 5 cut(s) 75, 438, 535, 586, 1042
BseMI GCAATG 2 cut(s) 539, 740
BseMII CTCAG 4 cut(s) 246, 257, 720, 828
BseNI ACTGG 2 cut(s) 442, 591
BseRI GAGGAG 1 cut(s) 1043
BseXI GCAGC 4 cut(s) 538, 942, 963, 985
BsgI GTGCAG 1 cut(s) 335
BshFI GGCC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 695
BsiSI CCGG 1 cut(s) 626
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 5 cut(s) 75, 438, 535, 586, 1042
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 695
Bsp119I TTCGAA 1 cut(s) 903
Bsp1286I GDGCHC 1 cut(s) 1037
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 5 cut(s) 11, 64, 228, 397, 508
Bsp1720I GCTNAGC 1 cut(s) 729
BspACI CCGC 2 cut(s) 156, 928
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 4 cut(s) 245, 258, 721, 827
BspLI GGNNCC 2 cut(s) 190, 520
BspPI GGATC 2 cut(s) 59, 503
BspT104I TTCGAA 1 cut(s) 903
BsrDI GCAATG 2 cut(s) 539, 740
BsrGI TGTACA 1 cut(s) 51
BsrI ACTGG 2 cut(s) 442, 591
BssECI CCNNGG 4 cut(s) 81, 624, 869, 1041
BssMI GATC 5 cut(s) 11, 64, 228, 397, 508
BssNI GRCGYC 1 cut(s) 918
BssSI CACGAG 1 cut(s) 418
BssT1I CCWWGG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 418
Bst2UI CCWGG 2 cut(s) 186, 870
Bst4CI ACNGT 3 cut(s) 376, 412, 809
Bst6I CTCTTC 1 cut(s) 750
BstACI GRCGYC 1 cut(s) 918
BstAPI GCANNNNNTGC 1 cut(s) 313
BstAUI TGTACA 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 903
BstC8I GCNNGC 3 cut(s) 937, 952, 981
BstDEI CTNAG 5 cut(s) 232, 266, 271, 729, 814
BstDSI CCRYGG 1 cut(s) 1041
BstENI CCTNNNNNAGG 1 cut(s) 73
BstF5I GGATG 1 cut(s) 51
BstHHI GCGC 2 cut(s) 256, 935
BstKTI GATC 5 cut(s) 14, 67, 231, 400, 511
BstMBI GATC 5 cut(s) 11, 64, 228, 397, 508
BstMWI GCNNNNNNNGC 3 cut(s) 313, 936, 970
BstNI CCWGG 2 cut(s) 186, 870
BstNSI RCATGY 3 cut(s) 208, 260, 954
BstPAI GACNNNNGTC 1 cut(s) 83
BstSCI CCNGG 3 cut(s) 184, 624, 868
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 4 cut(s) 538, 942, 963, 985
BstV2I GAAGAC 3 cut(s) 207, 360, 810
BsuRI GGCC 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 1041
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 3 cut(s) 323, 372, 822
Cac8I GCNNGC 3 cut(s) 937, 952, 981
CfoI GCGC 2 cut(s) 256, 935
Cfr13I GGNCC 1 cut(s) 78
Csp6I GTAC 4 cut(s) 52, 794, 874, 1116
CviAII CATG 4 cut(s) 55, 205, 257, 951
CviQI GTAC 4 cut(s) 52, 794, 874, 1116
DdeI CTNAG 5 cut(s) 232, 266, 271, 729, 814
DpnI GATC 5 cut(s) 13, 66, 230, 399, 510
DpnII GATC 5 cut(s) 11, 64, 228, 397, 508
DrdI GACNNNNNNGTC 1 cut(s) 785
DseDI GACNNNNNNGTC 1 cut(s) 785
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 750
EarI CTCTTC 1 cut(s) 750
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 1037
Eco47I GGWCC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 695
EcoNI CCTNNNNNAGG 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 184, 868
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 1037
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 4 cut(s) 58, 208, 260, 954
FaqI GGGAC 1 cut(s) 467
FatI CATG 4 cut(s) 54, 204, 256, 950
FblI GTMKAC 1 cut(s) 924
Fnu4HI GCNGC 4 cut(s) 552, 931, 974, 977
FokI GGATG 1 cut(s) 58
FriOI GRGCYC 1 cut(s) 1037
Fsp4HI GCNGC 4 cut(s) 552, 931, 974, 977
FspAI RTGCGCAY 1 cut(s) 255
FspBI CTAG 5 cut(s) 240, 648, 656, 1047, 1089
FspI TGCGCA 1 cut(s) 255
GlaI GCGC 2 cut(s) 255, 934
GluI GCNGC 4 cut(s) 552, 931, 974, 977
GsuI CTGGAG 3 cut(s) 512, 608, 1046
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 626
HhaI GCGC 2 cut(s) 256, 935
Hin1I GRCGYC 1 cut(s) 918
Hin1II CATG 4 cut(s) 58, 208, 260, 954
Hin6I GCGC 2 cut(s) 254, 933
HinP1I GCGC 2 cut(s) 254, 933
HincII GTYRAC 2 cut(s) 503, 1086
HindII GTYRAC 2 cut(s) 503, 1086
HinfI GANTC 5 cut(s) 423, 458, 606, 691, 715
HpaI GTTAAC 1 cut(s) 1086
HpaII CCGG 1 cut(s) 626
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 7 cut(s) 277, 503, 778, 796, 876, 925, 1086
Hpy188I TCNGA 5 cut(s) 64, 134, 235, 670, 791
Hpy188III TCNNGA 4 cut(s) 418, 516, 695, 1025
Hpy8I GTNNAC 7 cut(s) 277, 503, 778, 796, 876, 925, 1086
Hpy99I CGWCG 3 cut(s) 290, 920, 923
HpyAV CCTTC 4 cut(s) 182, 533, 596, 1047
HpyCH4III ACNGT 3 cut(s) 376, 412, 809
HpyCH4IV ACGT 4 cut(s) 331, 402, 558, 918
HpyCH4V TGCA 4 cut(s) 38, 95, 316, 954
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 936, 970
HpyF3I CTNAG 5 cut(s) 232, 266, 271, 729, 814
HpySE526I ACGT 4 cut(s) 331, 402, 558, 918
Hsp92I GRCGYC 1 cut(s) 918
Hsp92II CATG 4 cut(s) 58, 208, 260, 954
HspAI GCGC 2 cut(s) 254, 933
KspAI GTTAAC 1 cut(s) 1086
Kzo9I GATC 5 cut(s) 11, 64, 228, 397, 508
LmnI GCTCC 1 cut(s) 947
Lsp1109I GCAGC 4 cut(s) 538, 942, 963, 985
LweI GCATC 1 cut(s) 68
MaeI CTAG 5 cut(s) 240, 648, 656, 1047, 1089
MaeII ACGT 4 cut(s) 331, 402, 558, 918
MaeIII GTNAC 7 cut(s) 85, 575, 650, 738, 809, 941, 1105
MalI GATC 5 cut(s) 13, 66, 230, 399, 510
MboI GATC 5 cut(s) 11, 64, 228, 397, 508
MboII GAAGA 4 cut(s) 212, 365, 767, 815
MhlI GDGCHC 1 cut(s) 1037
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 3 cut(s) 244, 479, 834
MluNI TGGCCA 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 769
Mox20I TGGCCA 1 cut(s) 336
Mph1103I ATGCAT 1 cut(s) 40
MroXI GAANNNNTTC 3 cut(s) 29, 281, 638
MscI TGGCCA 1 cut(s) 336
MseI TTAA 4 cut(s) 405, 482, 561, 1085
Msp20I TGGCCA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 976
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 3 cut(s) 186, 626, 870
Mva1269I GAATGC 1 cut(s) 95
MvaI CCWGG 2 cut(s) 186, 870
MwoI GCNNNNNNNGC 3 cut(s) 313, 936, 970
NciI CCSGG 1 cut(s) 626
NdeII GATC 5 cut(s) 11, 64, 228, 397, 508
NlaIII CATG 4 cut(s) 58, 208, 260, 954
NlaIV GGNNCC 2 cut(s) 190, 520
NmuCI GTSAC 1 cut(s) 85
NsbI TGCGCA 1 cut(s) 255
NsiI ATGCAT 1 cut(s) 40
NspI RCATGY 3 cut(s) 208, 260, 954
NspV TTCGAA 1 cut(s) 903
PaeI GCATGC 1 cut(s) 954
PciI ACATGT 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 900
PctI GAATGC 1 cut(s) 95
PdmI GAANNNNTTC 3 cut(s) 29, 281, 638
PfeI GAWTC 5 cut(s) 423, 458, 606, 691, 715
PflFI GACNNNGTC 1 cut(s) 920
PflMI CCANNNNNTGG 1 cut(s) 586
PkrI GCNGC 4 cut(s) 553, 932, 975, 978
PscI ACATGT 1 cut(s) 204
PshAI GACNNNNGTC 1 cut(s) 83
PshBI ATTAAT 1 cut(s) 482
Psp6I CCWGG 2 cut(s) 184, 868
PspGI CCWGG 2 cut(s) 184, 868
PspN4I GGNNCC 2 cut(s) 190, 520
PspPI GGNCC 1 cut(s) 78
PsyI GACNNNGTC 1 cut(s) 920
PvuII CAGCTG 1 cut(s) 976
RsaI GTAC 4 cut(s) 53, 795, 875, 1117
RsaNI GTAC 4 cut(s) 52, 794, 874, 1116
SaqAI TTAA 4 cut(s) 405, 482, 561, 1085
SatI GCNGC 4 cut(s) 552, 931, 974, 977
Sau3AI GATC 5 cut(s) 11, 64, 228, 397, 508
Sau96I GGNCC 1 cut(s) 78
ScaI AGTACT 1 cut(s) 1117
ScrFI CCNGG 3 cut(s) 186, 626, 870
SduI GDGCHC 1 cut(s) 1037
SfaNI GCATC 1 cut(s) 68
SfcI CTRYAG 1 cut(s) 163
SfuI TTCGAA 1 cut(s) 903
SinI GGWCC 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 984
SmoI CTYRAG 1 cut(s) 984
SphI GCATGC 1 cut(s) 954
Sse9I AATT 3 cut(s) 244, 479, 834
SsiI CCGC 2 cut(s) 156, 928
SspMI CTAG 5 cut(s) 240, 648, 656, 1047, 1089
StyD4I CCNGG 3 cut(s) 184, 624, 868
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 3 cut(s) 376, 412, 809
TaiI ACGT 4 cut(s) 334, 405, 561, 921
TaqI TCGA 4 cut(s) 285, 713, 903, 1080
TasI AATT 3 cut(s) 244, 479, 834
TatI WGTACW 3 cut(s) 51, 793, 1115
TfiI GAWTC 5 cut(s) 423, 458, 606, 691, 715
Tru1I TTAA 4 cut(s) 405, 482, 561, 1085
Tru9I TTAA 4 cut(s) 405, 482, 561, 1085
TscAI CASTG 3 cut(s) 323, 379, 822
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 4 cut(s) 551, 930, 973, 976
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 5 cut(s) 17, 137, 500, 664, 707
TspGWI ACGGA 2 cut(s) 960, 1023
TspRI CASTG 3 cut(s) 323, 379, 822
Tth111I GACNNNGTC 1 cut(s) 920
Van91I CCANNNNNTGG 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 78
VspI ATTAAT 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 73
XceI RCATGY 3 cut(s) 208, 260, 954
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 924
XmnI GAANNNNTTC 3 cut(s) 29, 281, 638
XspI CTAG 5 cut(s) 240, 648, 656, 1047, 1089
ZraI GACGTC 1 cut(s) 919
ZrmI AGTACT 1 cut(s) 1117
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.