Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005233

Physical Location & Seq

Genomic Coordinates Reverse (-)

16437939 .. 16440396

Gene Structure 2458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00013380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTTTGGAAAGGCTTTTGTTTGGTTAGTTTTACTCTTTTTGTCATTTTGCTTAAACCCTGCACAAGCTGACTCTAGTTTTGGTGGAACAAAAGGAACCCGATTTGTTATGAATGGGAAACCATTTTACATAAACGGATTCAATGCGTATTGGATGATGTACATGGCATCTGACCCATCTACACGGGCCAAGGTTACTTCTGCATTCCAACAAGCCTCCAAGTATAAGATGAATATTGCTAGAACTTGGGCTTTCAGTGATGGTGTTGGGAAAGCCCTTCAAACATCGCCTGGTTCATATAACGAAGATATGTTCAAGTGGGCAAGGGAGCGGGGCCAATCCCTCAACAGTGATGACGACTTCTACAACAACACTGTTGTCAAAGGCTACTACAAGAACCATGTCAAGACTATTCTAACGAGAATTAATACAATAACGAATGTGGCATACAAAGATGATCCAATCATTTTCGCATGGGAGCTAATCAATGAACCCCGTTGCGAATCTGATGTCTCGGGAGCTCTTCTTCAGCAATGGGTGAACGAAATGGCTGCACATTTAAAATCCATTGATGGCAACCATTTACTGGAGATAGGACTTGAAGGATTTTATGGGGCAACGACGCCGGAGAAGCAGCAATATAATCCCAATAACCAAGAGTTGGGCTCTGATTTCATAGCAACCAACTTACTTCCACAAGTGGATTTTGCCACTATACATATCTACGCCGAGCAATGGTTATCCGGACAGAGCGAAGAGGCTCAAGCTGCTTTCGTGGATAAATGGGTGCAAGTACACATTGACGATTGTAATACAATAGTGAAGAAACCACTTATTATGGCGGAGTTCGGCAAGTCTTGGAAATATCCAGGGTACTCCATAGAAAACAGAAACGCCTACTTTGGAAAGCTATACGACGCCGTATACAGCAGCGCCAAAAGTGGGGGAGCGTGTGTAGGTGGACTTTTCTGGCAGCTGTTTGCGCAAGGTATGGAAAACTTCGGGGACGGATACCAAGTCGTTTTAGAGGAGAGCCCGTCAACTGCTGATGTCATCGCCCAGCAGTCTCAAAGGCTCCAGTCGCTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

363

Amino Acids

40.8

Weight (kDa)

5.35

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	120 - 325	6e-32	GH family 5 beta-mannosidase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02310 AT1G02310
fragaria_vesca	FvH4_6g08680 FvH4_6g36270 FvH4_6g36270
malus_domestica	MD09G1170400.v1.1 MD17G1156500.v1.1
prunus_persica	Prupe.3G028800_v2.0.a1
pyrus_communis	pycom09g08810
rosa_chinensis	RchiOBHm_Chr2g0148271 RchiOBHm_Chr5g0067931
rosa_laevigata	RLG00000020331 RLG00000035944
rosa_multiflora	Rmu_sc0003937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012680 Rroxscaffold_1G00013380 Rroxscaffold_2G00098950
rosa_rugosa	Rorug02G0405200 Rorug05G0386300
rosa_samantha	Rh2AG463800 Rh2BG476900 Rh2CG450600 Rh2DG485600 Rh5AG445500 Rh5BG462900 Rh5CG484800 Rh5DG476900
rosa_wichuraiana	Rw2G037810 Rw5G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	984
AccB7I	CCANNNNNTGG	2 cut(s)	586, 661
AccBSI	CCGCTC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	924
AccIII	TCCGGA	1 cut(s)	743
AciI	CCGC	2 cut(s)	331, 842
AclWI	GGATC	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	512
AcyI	GRCGYC	2 cut(s)	623, 918
AfaI	GTAC	3 cut(s)	161, 795, 875
AfiI	CCNNNNNNNGG	4 cut(s)	586, 661, 735, 942
AgsI	TTSAA	4 cut(s)	142, 281, 316, 602
AjnI	CCWGG	2 cut(s)	289, 868
AluBI	AGCT	6 cut(s)	68, 481, 521, 767, 910, 976
AluI	AGCT	6 cut(s)	68, 481, 521, 767, 910, 976
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	2 cut(s)	517, 1071
AlwI	GGATC	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	514
Aor13HI	TCCGGA	1 cut(s)	743
AoxI	GGCC	2 cut(s)	186, 334
ApeKI	GCWGC	5 cut(s)	551, 634, 767, 930, 973
ArsI	GACNNNNNNTTYG	4 cut(s)	62, 94, 495, 527
AseI	ATTAAT	1 cut(s)	426
AspLEI	GCGC	2 cut(s)	935, 985
AspS9I	GGNCC	2 cut(s)	186, 334
AsuHPI	GGTGA	1 cut(s)	550
AvaI	CYCGRG	1 cut(s)	514
BanII	GRGCYC	3 cut(s)	523, 668, 1037
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	5 cut(s)	538, 646, 754, 942, 985
BccI	CCATC	3 cut(s)	184, 254, 566
BceAI	ACGGC	1 cut(s)	905
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	2 cut(s)	291, 870
BciVI	GTATCC	1 cut(s)	1004
BcoDI	GTCTC	2 cut(s)	517, 1071
BfaI	CTAG	2 cut(s)	75, 240
BfoI	RGCGCY	1 cut(s)	936
BfuI	GTATCC	1 cut(s)	1004
BisI	GCNGC	5 cut(s)	552, 635, 768, 931, 974
BlsI	GCNGC	5 cut(s)	553, 636, 769, 932, 975
Bme1390I	CCNGG	2 cut(s)	291, 870
BmeT110I	CYCGRG	1 cut(s)	514
BmgT120I	GGNCC	2 cut(s)	186, 334
BmiI	GGNNCC	3 cut(s)	97, 335, 1076
BmrFI	CCNGG	2 cut(s)	291, 870
BmsI	GCATC	1 cut(s)	176
BplI	GAGNNNNNCTC	2 cut(s)	650, 682
BpmI	CTGGAG	2 cut(s)	608, 1061
BpuEI	CTTGAG	1 cut(s)	747
BsaHI	GRCGYC	2 cut(s)	623, 918
BsaJI	CCNNGG	2 cut(s)	189, 869
BsaWI	WCCGGW	1 cut(s)	743
BsaXI	ACNNNNNCTCC	4 cut(s)	939, 969, 1022, 1052
Bsc4I	CCNNNNNNNGG	4 cut(s)	586, 661, 735, 942
Bse1I	ACTGG	2 cut(s)	591, 1078
Bse3DI	GCAATG	2 cut(s)	539, 740
BseAI	TCCGGA	1 cut(s)	743
BseBI	CCWGG	2 cut(s)	291, 870
BseDI	CCNNGG	2 cut(s)	189, 869
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	4 cut(s)	586, 661, 735, 942
BseMI	GCAATG	2 cut(s)	539, 740
BseNI	ACTGG	2 cut(s)	591, 1078
BseRI	GAGGAG	1 cut(s)	1043
BseXI	GCAGC	5 cut(s)	538, 646, 754, 942, 985
BseYI	CCCAGC	1 cut(s)	1059
BsgI	GTGCAG	2 cut(s)	45, 537
BshFI	GGCC	2 cut(s)	188, 336
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	514
BsiSI	CCGG	2 cut(s)	626, 744
BslFI	GGGAC	1 cut(s)	1019
BslI	CCNNNNNNNGG	4 cut(s)	586, 661, 735, 942
BsmAI	GTCTC	2 cut(s)	517, 1071
BsmFI	GGGAC	1 cut(s)	1019
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	188, 336
BsoBI	CYCGRG	1 cut(s)	514
Bsp1286I	GDGCHC	3 cut(s)	523, 668, 1037
Bsp13I	TCCGGA	1 cut(s)	743
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	2 cut(s)	331, 842
BspANI	GGCC	2 cut(s)	188, 336
BspEI	TCCGGA	1 cut(s)	743
BspLI	GGNNCC	3 cut(s)	97, 335, 1076
BspPI	GGATC	1 cut(s)	452
BspQI	GCTCTTC	1 cut(s)	528
BsrBI	CCGCTC	1 cut(s)	331
BsrDI	GCAATG	2 cut(s)	539, 740
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	591, 1078
BssECI	CCNNGG	2 cut(s)	189, 869
BssMI	GATC	1 cut(s)	457
BssNAI	GTATAC	1 cut(s)	925
BssNI	GRCGYC	2 cut(s)	623, 918
BssT1I	CCWWGG	1 cut(s)	189
Bst1107I	GTATAC	1 cut(s)	925
Bst2UI	CCWGG	2 cut(s)	291, 870
Bst4CI	ACNGT	2 cut(s)	350, 376
Bst6I	CTCTTC	2 cut(s)	528, 750
BstACI	GRCGYC	2 cut(s)	623, 918
BstAUI	TGTACA	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	936
BstHHI	GCGC	2 cut(s)	935, 985
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	2 cut(s)	517, 1071
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	4 cut(s)	631, 767, 982, 1081
BstNI	CCWGG	2 cut(s)	291, 870
BstSCI	CCNGG	2 cut(s)	289, 868
BstV1I	GCAGC	5 cut(s)	538, 646, 754, 942, 985
BstZ17I	GTATAC	1 cut(s)	925
BsuI	GTATCC	1 cut(s)	1004
BsuRI	GGCC	2 cut(s)	188, 336
BtgZI	GCGATG	2 cut(s)	270, 1039
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	3 cut(s)	262, 355, 372
CfoI	GCGC	2 cut(s)	935, 985
Cfr13I	GGNCC	2 cut(s)	186, 334
CseI	GACGC	2 cut(s)	631, 926
Csp6I	GTAC	3 cut(s)	160, 794, 874
CviAII	CATG	3 cut(s)	163, 401, 474
CviQI	GTAC	3 cut(s)	160, 794, 874
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
DraI	TTTAAA	1 cut(s)	561
Eam1104I	CTCTTC	2 cut(s)	528, 750
EarI	CTCTTC	2 cut(s)	528, 750
EciI	GGCGGA	1 cut(s)	857
Ecl136II	GAGCTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	3 cut(s)	523, 668, 1037
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	512
Eco88I	CYCGRG	1 cut(s)	514
EcoICRI	GAGCTC	1 cut(s)	521
EcoRII	CCWGG	2 cut(s)	289, 868
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	3 cut(s)	523, 668, 1037
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	3 cut(s)	166, 404, 477
FaqI	GGGAC	1 cut(s)	1019
FatI	CATG	3 cut(s)	162, 400, 473
FauI	CCCGC	1 cut(s)	324
FblI	GTMKAC	1 cut(s)	924
Fnu4HI	GCNGC	5 cut(s)	552, 635, 768, 931, 974
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	3 cut(s)	523, 668, 1037
Fsp4HI	GCNGC	5 cut(s)	552, 635, 768, 931, 974
FspBI	CTAG	2 cut(s)	75, 240
FspI	TGCGCA	1 cut(s)	984
GlaI	GCGC	2 cut(s)	934, 984
GluI	GCNGC	5 cut(s)	552, 635, 768, 931, 974
GsaI	CCCAGC	1 cut(s)	1063
GsuI	CTGGAG	2 cut(s)	608, 1061
HaeII	RGCGCY	1 cut(s)	936
HaeIII	GGCC	2 cut(s)	188, 336
HapII	CCGG	2 cut(s)	626, 744
HgaI	GACGC	2 cut(s)	631, 926
HhaI	GCGC	2 cut(s)	935, 985
Hin1I	GRCGYC	2 cut(s)	623, 918
Hin1II	CATG	3 cut(s)	166, 404, 477
Hin6I	GCGC	2 cut(s)	933, 983
HinP1I	GCGC	2 cut(s)	933, 983
HincII	GTYRAC	1 cut(s)	1041
HindII	GTYRAC	1 cut(s)	1041
HinfI	GANTC	3 cut(s)	71, 138, 503
HpaII	CCGG	2 cut(s)	626, 744
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	5 cut(s)	541, 796, 925, 962, 1041
Hpy188I	TCNGA	3 cut(s)	172, 508, 670
Hpy188III	TCNNGA	3 cut(s)	406, 516, 744
Hpy8I	GTNNAC	5 cut(s)	541, 796, 925, 962, 1041
Hpy99I	CGWCG	2 cut(s)	625, 920
HpyAV	CCTTC	2 cut(s)	287, 596
HpyCH4III	ACNGT	2 cut(s)	350, 376
HpyCH4V	TGCA	4 cut(s)	62, 203, 554, 790
HpyF10VI	GCNNNNNNNGC	4 cut(s)	631, 767, 982, 1081
Hsp92I	GRCGYC	2 cut(s)	623, 918
Hsp92II	CATG	3 cut(s)	166, 404, 477
HspAI	GCGC	2 cut(s)	933, 983
Kpn2I	TCCGGA	1 cut(s)	743
Kzo9I	GATC	1 cut(s)	457
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	5 cut(s)	328, 478, 518, 947, 1080
Lsp1109I	GCAGC	5 cut(s)	538, 646, 754, 942, 985
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	2 cut(s)	75, 240
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	459
MbiI	CCGCTC	1 cut(s)	331
MboI	GATC	1 cut(s)	457
MboII	GAAGA	5 cut(s)	317, 515, 518, 767, 835
MhlI	GDGCHC	3 cut(s)	523, 668, 1037
MluCI	AATT	2 cut(s)	423, 1087
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	4 cut(s)	226, 353, 751, 1021
MroI	TCCGGA	1 cut(s)	743
MseI	TTAA	4 cut(s)	53, 426, 560, 1090
MspA1I	CMGCKG	1 cut(s)	976
MspI	CCGG	2 cut(s)	626, 744
MspR9I	CCNGG	2 cut(s)	291, 870
Mva1269I	GAATGC	1 cut(s)	203
MvaI	CCWGG	2 cut(s)	291, 870
MwoI	GCNNNNNNNGC	4 cut(s)	631, 767, 982, 1081
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	166, 404, 477
NlaIV	GGNNCC	3 cut(s)	97, 335, 1076
NmeAIII	GCCGAG	1 cut(s)	754
NsbI	TGCGCA	1 cut(s)	984
PciSI	GCTCTTC	1 cut(s)	528
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	138, 503
PflMI	CCANNNNNTGG	2 cut(s)	586, 661
PkrI	GCNGC	5 cut(s)	553, 636, 769, 932, 975
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PshBI	ATTAAT	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	523
Psp6I	CCWGG	2 cut(s)	289, 868
PspFI	CCCAGC	1 cut(s)	1059
PspGI	CCWGG	2 cut(s)	289, 868
PspN4I	GGNNCC	3 cut(s)	97, 335, 1076
PspPI	GGNCC	2 cut(s)	186, 334
PvuII	CAGCTG	1 cut(s)	976
RsaI	GTAC	3 cut(s)	161, 795, 875
RsaNI	GTAC	3 cut(s)	160, 794, 874
SacI	GAGCTC	1 cut(s)	523
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	4 cut(s)	53, 426, 560, 1090
SatI	GCNGC	5 cut(s)	552, 635, 768, 931, 974
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	2 cut(s)	186, 334
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	291, 870
SduI	GDGCHC	3 cut(s)	523, 668, 1037
SetI	ASST	9 cut(s)	70, 195, 483, 523, 769, 912, 961, 978, 991
SfaNI	GCATC	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	762
SmoI	CTYRAG	1 cut(s)	762
Sse9I	AATT	2 cut(s)	423, 1087
SsiI	CCGC	2 cut(s)	331, 842
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	2 cut(s)	75, 240
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	2 cut(s)	289, 868
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	350, 376
TasI	AATT	2 cut(s)	423, 1087
TatI	WGTACW	2 cut(s)	159, 793
TfiI	GAWTC	2 cut(s)	138, 503
Tru1I	TTAA	4 cut(s)	53, 426, 560, 1090
Tru9I	TTAA	4 cut(s)	53, 426, 560, 1090
TscAI	CASTG	3 cut(s)	262, 355, 379
TseI	GCWGC	5 cut(s)	551, 634, 767, 930, 973
TspDTI	ATGAA	5 cut(s)	125, 245, 285, 504, 664
TspGWI	ACGGA	2 cut(s)	150, 1023
TspRI	CASTG	3 cut(s)	262, 355, 379
Van91I	CCANNNNNTGG	2 cut(s)	586, 661
VspI	ATTAAT	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	924
XspI	CTAG	2 cut(s)	75, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.