Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005233

Physical Location & Seq

Genomic Coordinates Forward (+)

6922134 .. 6923311

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08810.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTCCAAATATTGTTTTTCATAAGAACTGTGCTCACGAGAACCAACTCGATAACGAACGTGGCTTACAAAGATGATCCAACCATCTTTGCGTGGGAACTAATAAATGAACCTCGTTGTCAATCTGACGTCTCCGGAGCCCTTGTTCAGCAATGGGTGAAAGAAATGGCTGCACACGTTAAGTCCATTGACAGTCAGCATTTACTAGAGATAGGGCTTGAAGGATTTTACGGACAAACAACGCCGGACAAGAAGCAGTTCAATCCTGGTAACCAGGAGTATGGATCTGATTTCACTGCCAGCAACTTGCTTCCCCAGATTGATTTCGCCACTATACATATCTATGCTGAGCAATGGTTATTGGGGTCAAGCGAAGAGGCTCAAGATGCTTTTGTAGACAAATGGGTGCAGGAACACATTCAAGACTGCAATACAGTAGTTAAGAAACCACTGATTTTGGGAGAATTTGGCAAGTCTTATAAATTACCAGGGTACAGCCTAGAAAAGAGGAACGCCTACTTTGCTAAACTATACAATGACATATACAACAGTGCCAATACCGGGGGCTCATGTGTGGGTGGGCTTTTCTGGCAGCTGATGGCTCAAGGAATGGAGAATTTTGGGGATGGATACGAAGTCGTTTTGGAGGAGAGCCCTACTACTGCCAATGTCATTGATCAGCAGTCCAGGAAGCTTGGTGGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

236

Amino Acids

26.44

Weight (kDa)

4.78

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02310 AT1G02310
fragaria_vesca	FvH4_6g08680 FvH4_6g36270 FvH4_6g36270
malus_domestica	MD09G1170400.v1.1 MD17G1156500.v1.1
prunus_persica	Prupe.3G028800_v2.0.a1
pyrus_communis	pycom09g08810
rosa_chinensis	RchiOBHm_Chr2g0148271 RchiOBHm_Chr5g0067931
rosa_laevigata	RLG00000020331 RLG00000035944
rosa_multiflora	Rmu_sc0003937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012680 Rroxscaffold_1G00013380 Rroxscaffold_2G00098950
rosa_rugosa	Rorug02G0405200 Rorug05G0386300
rosa_samantha	Rh2AG463800 Rh2BG476900 Rh2CG450600 Rh2DG485600 Rh5AG445500 Rh5BG462900 Rh5CG484800 Rh5DG476900
rosa_wichuraiana	Rw2G037810 Rw5G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AatII	GACGTC	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	134
AclWI	GGATC	2 cut(s)	71, 292
AcsI	RAATTY	2 cut(s)	464, 616
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	561
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	221, 262, 422
AjnI	CCWGG	4 cut(s)	265, 273, 487, 686
AloI	GAACNNNNNNTCC	2 cut(s)	129, 161
AluBI	AGCT	2 cut(s)	595, 694
AluI	AGCT	2 cut(s)	595, 694
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	2 cut(s)	71, 292
Aor13HI	TCCGGA	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	170, 592
ApoI	RAATTY	2 cut(s)	464, 616
Asp700I	GAANNNNTTC	2 cut(s)	257, 417
AsuC2I	CCSGG	1 cut(s)	562
AsuHPI	GGTGA	1 cut(s)	169
BanII	GRGCYC	3 cut(s)	142, 569, 656
BauI	CACGAG	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	157, 604
BccI	CCATC	3 cut(s)	92, 592, 620
BciT130I	CCWGG	4 cut(s)	267, 275, 489, 688
BciVI	GTATCC	1 cut(s)	623
BclI	TGATCA	1 cut(s)	676
BcnI	CCSGG	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	2 cut(s)	206, 500
BfuI	GTATCC	1 cut(s)	623
BisI	GCNGC	2 cut(s)	171, 593
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	2 cut(s)	172, 594
Bme1390I	CCNGG	5 cut(s)	267, 275, 489, 562, 688
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	5 cut(s)	267, 275, 489, 562, 688
BmsI	GCATC	1 cut(s)	376
Bpu1102I	GCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	366, 588
BpuMI	CCSGG	1 cut(s)	562
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	488, 561
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse3DI	GCAATG	2 cut(s)	158, 359
BseAI	TCCGGA	1 cut(s)	134
BseBI	CCWGG	4 cut(s)	267, 275, 489, 688
BseDI	CCNNGG	2 cut(s)	488, 561
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMI	GCAATG	2 cut(s)	158, 359
BseMII	CTCAG	1 cut(s)	339
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	2 cut(s)	157, 604
BsgI	GTGCAG	2 cut(s)	156, 428
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	135, 245, 561
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	1 cut(s)	136
BsmBI	CGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	4 cut(s)	36, 142, 569, 656
Bsp13I	TCCGGA	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	76, 284, 676
Bsp1720I	GCTNAGC	1 cut(s)	348
BspCNI	CTCAG	1 cut(s)	340
BspEI	TCCGGA	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	71, 292
BsrDI	GCAATG	2 cut(s)	158, 359
BssECI	CCNNGG	2 cut(s)	488, 561
BssMI	GATC	3 cut(s)	76, 284, 676
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	37
Bst2BI	CACGAG	1 cut(s)	37
Bst2UI	CCWGG	4 cut(s)	267, 275, 489, 688
Bst4CI	ACNGT	4 cut(s)	31, 194, 436, 551
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	348
BstEII	GGTNACC	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	631
BstKTI	GATC	3 cut(s)	79, 287, 679
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	3 cut(s)	76, 284, 676
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 521, 589
BstNI	CCWGG	4 cut(s)	267, 275, 489, 688
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	5 cut(s)	265, 273, 487, 560, 686
BstV1I	GCAGC	2 cut(s)	157, 604
BstX2I	RGATCY	1 cut(s)	284
BstXI	CCANNNNNNTGG	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	623
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	3 cut(s)	294, 449, 556
Cac8I	GCNNGC	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	493
CspCI	CAANNNNNGTGG	2 cut(s)	438, 473
CviAII	CATG	1 cut(s)	570
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	3 cut(s)	78, 286, 678
DpnII	GATC	3 cut(s)	76, 284, 676
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco24I	GRGCYC	3 cut(s)	142, 569, 656
Eco91I	GGTNACC	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	269
EcoRII	CCWGG	4 cut(s)	265, 273, 487, 686
EcoT38I	GRGCYC	3 cut(s)	142, 569, 656
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	1 cut(s)	573
FatI	CATG	1 cut(s)	569
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	2 cut(s)	171, 593
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	3 cut(s)	142, 569, 656
Fsp4HI	GCNGC	2 cut(s)	171, 593
FspBI	CTAG	2 cut(s)	206, 500
GluI	GCNGC	2 cut(s)	171, 593
HapII	CCGG	3 cut(s)	135, 245, 561
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	692
HpaII	CCGG	3 cut(s)	135, 245, 561
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	2 cut(s)	127, 289
Hpy188III	TCNNGA	4 cut(s)	37, 135, 383, 422
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	4 cut(s)	31, 194, 436, 551
HpyCH4IV	ACGT	3 cut(s)	60, 129, 177
HpyCH4V	TGCA	3 cut(s)	173, 409, 429
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 521, 589
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	3 cut(s)	60, 129, 177
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	573
Kpn2I	TCCGGA	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	676
Kzo9I	GATC	3 cut(s)	76, 284, 676
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	2 cut(s)	157, 604
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	206, 500
MaeII	ACGT	3 cut(s)	60, 129, 177
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	3 cut(s)	78, 286, 678
MboI	GATC	3 cut(s)	76, 284, 676
MboII	GAAGA	1 cut(s)	386
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	4 cut(s)	36, 142, 569, 656
MluCI	AATT	3 cut(s)	464, 482, 616
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	4 cut(s)	123, 370, 501, 640
MroI	TCCGGA	1 cut(s)	134
MroXI	GAANNNNTTC	2 cut(s)	257, 417
MseI	TTAA	2 cut(s)	180, 441
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	595
MspI	CCGG	3 cut(s)	135, 245, 561
MspR9I	CCNGG	5 cut(s)	267, 275, 489, 562, 688
MvaI	CCWGG	4 cut(s)	267, 275, 489, 688
MwoI	GCNNNNNNNGC	3 cut(s)	386, 521, 589
NciI	CCSGG	1 cut(s)	562
NdeII	GATC	3 cut(s)	76, 284, 676
NlaIII	CATG	1 cut(s)	573
NlaIV	GGNNCC	1 cut(s)	139
PdmI	GAANNNNTTC	2 cut(s)	257, 417
PfoI	TCCNGGA	1 cut(s)	686
PkrI	GCNGC	2 cut(s)	172, 594
PsiI	TTATAA	1 cut(s)	480
Psp6I	CCWGG	4 cut(s)	265, 273, 487, 686
PspEI	GGTNACC	1 cut(s)	269
PspGI	CCWGG	4 cut(s)	265, 273, 487, 686
PspN4I	GGNNCC	1 cut(s)	139
PsrI	GAACNNNNNNTAC	2 cut(s)	50, 82
PsuI	RGATCY	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	595
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	180, 441
SatI	GCNGC	2 cut(s)	171, 593
Sau3AI	GATC	3 cut(s)	76, 284, 676
ScrFI	CCNGG	5 cut(s)	267, 275, 489, 562, 688
SduI	GDGCHC	4 cut(s)	36, 142, 569, 656
SetI	ASST	6 cut(s)	63, 115, 132, 180, 597, 696
SfaNI	GCATC	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	2 cut(s)	381, 603
SmoI	CTYRAG	2 cut(s)	381, 603
Sse9I	AATT	3 cut(s)	464, 482, 616
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	2 cut(s)	206, 500
StyD4I	CCNGG	5 cut(s)	265, 273, 487, 560, 686
TaaI	ACNGT	4 cut(s)	31, 194, 436, 551
TaiI	ACGT	3 cut(s)	63, 132, 180
TaqI	TCGA	1 cut(s)	50
TasI	AATT	3 cut(s)	464, 482, 616
Tru1I	TTAA	2 cut(s)	180, 441
Tru9I	TTAA	2 cut(s)	180, 441
TscAI	CASTG	3 cut(s)	301, 456, 556
TseI	GCWGC	2 cut(s)	170, 592
TspDTI	ATGAA	2 cut(s)	10, 123
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	3 cut(s)	301, 456, 556
XapI	RAATTY	2 cut(s)	464, 616
XmiI	GTMKAC	1 cut(s)	396
XmnI	GAANNNNTTC	2 cut(s)	257, 417
XspI	CTAG	2 cut(s)	206, 500
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.