Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005233

Physical Location & Seq

Genomic Coordinates Forward (+)

2158864 .. 2162188

Gene Structure 3325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G028800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGTCGGGGAAGGGTTTGTTTGTTTTGTCAACTCTTTTGGTGTTGATCGTCATTCAACATGGAGATTGTAAAGGTGAAGCCAATCATGCCTCTAATGGTGGTGCTTTTGCTCGAACAGAAGGAACCCGTTTTGTTATGAATGGGAGACCGTTTTACATAAATGGTTTCAATGCGTATTGGATGATGTACATGGCATCTGACCCATCTTCAAGAGCCAAGGTCACTTCTGCATTCCAACAAGCCTCCAGGTATGGCATGAATGTTGCTAGAACTTGGGCTTTCAATGATGGCCGCGGCAAAGACAGACCCCTTCAGCCTTCTCCTGGCTCCTATAACGAGGACACATTCAAGGGATTAGATTTTGTGATATCAGAGGCTAAAAAATTCGGAGTACATGTGATACTAAGCTTTGTGAACAACTTTAGCGACTTTGGGGGTAGAAAGCAATATGTGCAGTGGGCAAGAGACCGTGGCCAACCCATCAGCAGCGATGACGACTTCTATTCAAACGCTGTCATCAAAGGATATTATAAGGATCATATTAAGACTGTGCTCACAAGAATAAACTCCATAACAAGGGTGGCCTACAAAGATGATCCAACCATCTTTGCTTGGGAACTAATAAATGAACCTCGTTGCCAATCTGATGTCTCTGGAGCCCTTCTTCAGCAATGGGTGACAGAAATGGCCGCACACGTTAAGTCCATTGATAGTGAGCATTTACTAGAAATAGGGCTTGAAGGATTTTATGGGGAAACGACGCCGGACAAGAAGCAGTACAACCCTGGTAACCTAGAGTTTGGCTCTGATTTCATAGCCACCAACTTGCTTCCCCAAATCGATTTTGCCACTATACATATCTATGCTGATCAATGGTTATCAGGAGAAAGCGAAGAGGCTCAAGCTGGTTTTGTGGACAGATGGGTGCAAGCACACATTCAAGACTGCAACACAGTGGTGAAGAAACCACTGCTCGTGGCTGAGTTCGGCAAGTCTTATAAATTGCCGGGCTATGTCCTACAAAAGAGGGACGCCTACTTTGGAAAAATATACAGTGACATTTACAGCAGTGCCAGCAGAGGGGGCTCATGTGTAGGTGGTCTTTTCTGGCAGCTCATGGCTCCAAATATGGACACTTTCGGAGATGGATACGAAGTCGTTTTGGAGCAGAGCCCTACCACTGCCACTGTCATTGCTCAACAGTCTAGGAAGCTTAATGGGTTAAAGGCTAGTCTAGCAATTAATGTCACAAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

420

Amino Acids

46.71

Weight (kDa)

6.46

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02310 AT1G02310
fragaria_vesca	FvH4_6g08680 FvH4_6g36270 FvH4_6g36270
malus_domestica	MD09G1170400.v1.1 MD17G1156500.v1.1
prunus_persica	Prupe.3G028800_v2.0.a1
pyrus_communis	pycom09g08810
rosa_chinensis	RchiOBHm_Chr2g0148271 RchiOBHm_Chr5g0067931
rosa_laevigata	RLG00000020331 RLG00000035944
rosa_multiflora	Rmu_sc0003937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012680 Rroxscaffold_1G00013380 Rroxscaffold_2G00098950
rosa_rugosa	Rorug02G0405200 Rorug05G0386300
rosa_samantha	Rh2AG463800 Rh2BG476900 Rh2CG450600 Rh2DG485600 Rh5AG445500 Rh5BG462900 Rh5CG484800 Rh5DG476900
rosa_wichuraiana	Rw2G037810 Rw5G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	531, 999
AccII	CGCG	1 cut(s)	294
AciI	CCGC	3 cut(s)	292, 294, 690
AclWI	GGATC	2 cut(s)	543, 590
AcoI	YGGCCR	3 cut(s)	289, 472, 687
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	2 cut(s)	296, 650
AcyI	GRCGYC	2 cut(s)	761, 1032
AfaI	GTAC	3 cut(s)	188, 393, 779
AfiI	CCNNNNNNNGG	3 cut(s)	323, 576, 1080
AflIII	ACRYGT	2 cut(s)	394, 694
AgsI	TTSAA	8 cut(s)	56, 169, 210, 283, 349, 507, 740, 941
AjnI	CCWGG	3 cut(s)	245, 322, 784
AleI	CACNNNNGTG	1 cut(s)	956
AluBI	AGCT	4 cut(s)	408, 905, 1114, 1213
AluI	AGCT	4 cut(s)	408, 905, 1114, 1213
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	3 cut(s)	139, 459, 655
AlwI	GGATC	2 cut(s)	543, 590
AoxI	GGCC	4 cut(s)	289, 472, 582, 687
ApeKI	GCWGC	2 cut(s)	486, 1111
ApoI	RAATTY	1 cut(s)	383
ArsI	GACNNNNNNTTYG	2 cut(s)	1022, 1054
AseI	ATTAAT	1 cut(s)	1242
AsuC2I	CCSGG	1 cut(s)	1008
AsuHPI	GGTGA	3 cut(s)	86, 688, 970
BalI	TGGCCA	1 cut(s)	474
BanII	GRGCYC	3 cut(s)	661, 1088, 1175
BauI	CACGAG	1 cut(s)	974
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	498, 1123
BccI	CCATC	6 cut(s)	211, 281, 488, 611, 915, 1139
BciT130I	CCWGG	3 cut(s)	247, 324, 786
BciVI	GTATCC	1 cut(s)	1142
BclI	TGATCA	1 cut(s)	868
BcnI	CCSGG	1 cut(s)	1008
BcoDI	GTCTC	3 cut(s)	139, 459, 655
BfaI	CTAG	6 cut(s)	267, 725, 794, 1206, 1230, 1235
BfuI	GTATCC	1 cut(s)	1142
BisI	GCNGC	5 cut(s)	292, 295, 487, 690, 1112
BlsI	GCNGC	5 cut(s)	293, 296, 488, 691, 1113
Bme1390I	CCNGG	4 cut(s)	247, 324, 786, 1008
BmiI	GGNNCC	4 cut(s)	124, 328, 658, 1122
BmrFI	CCNGG	4 cut(s)	247, 324, 786, 1008
BmsI	GCATC	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	788, 820
BpmI	CTGGAG	2 cut(s)	229, 675
BpuEI	CTTGAG	1 cut(s)	885
BpuMI	CCSGG	1 cut(s)	1008
Bsa29I	ATCGAT	1 cut(s)	840
BsaHI	GRCGYC	2 cut(s)	761, 1032
BsaI	GGTCTC	2 cut(s)	139, 459
BsaJI	CCNNGG	4 cut(s)	216, 292, 469, 784
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	3 cut(s)	323, 576, 1080
Bse3DI	GCAATG	2 cut(s)	677, 1191
BseBI	CCWGG	3 cut(s)	247, 324, 786
BseCI	ATCGAT	1 cut(s)	840
BseDI	CCNNGG	4 cut(s)	216, 292, 469, 784
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	3 cut(s)	323, 576, 1080
BseMI	GCAATG	2 cut(s)	677, 1191
BseMII	CTCAG	1 cut(s)	972
BseXI	GCAGC	2 cut(s)	498, 1123
BsgI	GTGCAG	1 cut(s)	473
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	4 cut(s)	291, 474, 584, 689
BshVI	ATCGAT	1 cut(s)	840
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	764, 1007
BslFI	GGGAC	1 cut(s)	1043
BslI	CCNNNNNNNGG	3 cut(s)	323, 576, 1080
BsmAI	GTCTC	3 cut(s)	139, 459, 655
BsmFI	GGGAC	1 cut(s)	1043
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	4 cut(s)	291, 474, 584, 689
Bso31I	GGTCTC	2 cut(s)	139, 459
Bsp1286I	GDGCHC	4 cut(s)	555, 661, 1088, 1175
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	4 cut(s)	45, 535, 595, 868
BspACI	CCGC	3 cut(s)	292, 294, 690
BspANI	GGCC	4 cut(s)	291, 474, 584, 689
BspCNI	CTCAG	1 cut(s)	973
BspDI	ATCGAT	1 cut(s)	840
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	4 cut(s)	124, 328, 658, 1122
BspPI	GGATC	2 cut(s)	543, 590
BspTNI	GGTCTC	2 cut(s)	139, 459
BsrDI	GCAATG	2 cut(s)	677, 1191
BsrGI	TGTACA	1 cut(s)	186
BssECI	CCNNGG	4 cut(s)	216, 292, 469, 784
BssMI	GATC	4 cut(s)	45, 535, 595, 868
BssNI	GRCGYC	2 cut(s)	761, 1032
BssSI	CACGAG	1 cut(s)	974
BssT1I	CCWWGG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	974
Bst2UI	CCWGG	3 cut(s)	247, 324, 786
Bst4CI	ACNGT	7 cut(s)	150, 470, 550, 955, 1055, 1189, 1203
Bst6I	CTCTTC	1 cut(s)	888
BstACI	GRCGYC	2 cut(s)	761, 1032
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstAUI	TGTACA	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	930, 1075
BstDEI	CTNAG	2 cut(s)	404, 981
BstDSI	CCRYGG	2 cut(s)	292, 469
BstEII	GGTNACC	1 cut(s)	788
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	294
BstKTI	GATC	4 cut(s)	48, 538, 598, 871
BstMAI	GTCTC	3 cut(s)	139, 459, 655
BstMBI	GATC	4 cut(s)	45, 535, 595, 868
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 451, 1074, 1083, 1235
BstNI	CCWGG	3 cut(s)	247, 324, 786
BstNSI	RCATGY	1 cut(s)	398
BstPI	GGTNACC	1 cut(s)	788
BstSCI	CCNGG	4 cut(s)	245, 322, 784, 1006
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	498, 1123
Bsu15I	ATCGAT	1 cut(s)	840
BsuI	GTATCC	1 cut(s)	1142
BsuRI	GGCC	4 cut(s)	291, 474, 584, 689
BsuTUI	ATCGAT	1 cut(s)	840
BtgI	CCRYGG	2 cut(s)	292, 469
BtgZI	GCGATG	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	186
BtsI	GCAGTG	4 cut(s)	461, 968, 1075, 1179
BtsIMutI	CAGTG	7 cut(s)	461, 960, 968, 1060, 1075, 1179, 1185
Cac8I	GCNNGC	2 cut(s)	930, 1075
Cfr42I	CCGCGG	1 cut(s)	295
ClaI	ATCGAT	1 cut(s)	840
CseI	GACGC	2 cut(s)	769, 1040
Csp6I	GTAC	3 cut(s)	187, 392, 778
CspCI	CAANNNNNGTGG	2 cut(s)	1174, 1209
CviAII	CATG	7 cut(s)	59, 86, 190, 256, 395, 1089, 1117
CviQI	GTAC	3 cut(s)	187, 392, 778
DdeI	CTNAG	2 cut(s)	404, 981
DpnI	GATC	4 cut(s)	47, 537, 597, 870
DpnII	GATC	4 cut(s)	45, 535, 595, 868
EaeI	YGGCCR	3 cut(s)	289, 472, 687
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	3 cut(s)	661, 1088, 1175
Eco31I	GGTCTC	2 cut(s)	139, 459
Eco32I	GATATC	1 cut(s)	369
Eco57I	CTGAAG	2 cut(s)	296, 650
Eco91I	GGTNACC	1 cut(s)	788
EcoO65I	GGTNACC	1 cut(s)	788
EcoRII	CCWGG	3 cut(s)	245, 322, 784
EcoRV	GATATC	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	3 cut(s)	661, 1088, 1175
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	7 cut(s)	62, 89, 193, 259, 398, 1092, 1120
FaqI	GGGAC	1 cut(s)	1043
FatI	CATG	7 cut(s)	58, 85, 189, 255, 394, 1088, 1116
FbaI	TGATCA	1 cut(s)	868
Fnu4HI	GCNGC	5 cut(s)	292, 295, 487, 690, 1112
FokI	GGATG	1 cut(s)	193
FriOI	GRGCYC	3 cut(s)	661, 1088, 1175
Fsp4HI	GCNGC	5 cut(s)	292, 295, 487, 690, 1112
FspBI	CTAG	6 cut(s)	267, 725, 794, 1206, 1230, 1235
GluI	GCNGC	5 cut(s)	292, 295, 487, 690, 1112
GsuI	CTGGAG	2 cut(s)	229, 675
HaeIII	GGCC	4 cut(s)	291, 474, 584, 689
HapII	CCGG	2 cut(s)	764, 1007
HgaI	GACGC	2 cut(s)	769, 1040
Hin1I	GRCGYC	2 cut(s)	761, 1032
Hin1II	CATG	7 cut(s)	62, 89, 193, 259, 398, 1092, 1120
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HindIII	AAGCTT	2 cut(s)	406, 1211
HpaII	CCGG	2 cut(s)	764, 1007
HphI	GGTGA	3 cut(s)	86, 688, 970
Hpy166II	GTNNAC	3 cut(s)	30, 415, 916
Hpy188I	TCNGA	6 cut(s)	199, 373, 389, 646, 808, 1142
Hpy188III	TCNNGA	4 cut(s)	210, 654, 882, 941
Hpy8I	GTNNAC	3 cut(s)	30, 415, 916
Hpy99I	CGWCG	1 cut(s)	763
HpyAV	CCTTC	6 cut(s)	4, 113, 320, 327, 671, 734
HpyCH4III	ACNGT	7 cut(s)	150, 470, 550, 955, 1055, 1189, 1203
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	4 cut(s)	230, 454, 928, 948
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 451, 1074, 1083, 1235
HpyF3I	CTNAG	2 cut(s)	404, 981
HpySE526I	ACGT	1 cut(s)	696
Hsp92I	GRCGYC	2 cut(s)	761, 1032
Hsp92II	CATG	7 cut(s)	62, 89, 193, 259, 398, 1092, 1120
Ksp22I	TGATCA	1 cut(s)	868
KspI	CCGCGG	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	45, 535, 595, 868
LmnI	GCTCC	4 cut(s)	332, 656, 1126, 1165
Lsp1109I	GCAGC	2 cut(s)	498, 1123
LweI	GCATC	1 cut(s)	203
MaeI	CTAG	6 cut(s)	267, 725, 794, 1206, 1230, 1235
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	5 cut(s)	220, 676, 788, 1055, 1246
MalI	GATC	4 cut(s)	47, 537, 597, 870
MboI	GATC	4 cut(s)	45, 535, 595, 868
MboII	GAAGA	4 cut(s)	198, 656, 905, 973
MhlI	GDGCHC	4 cut(s)	555, 661, 1088, 1175
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	3 cut(s)	383, 1001, 1239
MluNI	TGGCCA	1 cut(s)	474
MmeI	TCCRAC	2 cut(s)	259, 623
MnlI	CCTC	8 cut(s)	100, 253, 331, 367, 642, 889, 1020, 1073
Mox20I	TGGCCA	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	5 cut(s)	543, 699, 1215, 1223, 1242
MslI	CAYNNNNRTG	2 cut(s)	861, 956
Msp20I	TGGCCA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	294
MspI	CCGG	2 cut(s)	764, 1007
MspR9I	CCNGG	4 cut(s)	247, 324, 786, 1008
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	3 cut(s)	247, 324, 786
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	5 cut(s)	86, 451, 1074, 1083, 1235
NciI	CCSGG	1 cut(s)	1008
NdeII	GATC	4 cut(s)	45, 535, 595, 868
NlaIII	CATG	7 cut(s)	62, 89, 193, 259, 398, 1092, 1120
NlaIV	GGNNCC	4 cut(s)	124, 328, 658, 1122
NmuCI	GTSAC	4 cut(s)	220, 676, 1055, 1246
NspI	RCATGY	1 cut(s)	398
OliI	CACNNNNGTG	1 cut(s)	956
PciI	ACATGT	1 cut(s)	394
PctI	GAATGC	1 cut(s)	230
PkrI	GCNGC	5 cut(s)	293, 296, 488, 691, 1113
PscI	ACATGT	1 cut(s)	394
PshBI	ATTAAT	1 cut(s)	1242
PsiI	TTATAA	2 cut(s)	531, 999
Psp6I	CCWGG	3 cut(s)	245, 322, 784
PspEI	GGTNACC	1 cut(s)	788
PspGI	CCWGG	3 cut(s)	245, 322, 784
PspN4I	GGNNCC	4 cut(s)	124, 328, 658, 1122
RsaI	GTAC	3 cut(s)	188, 393, 779
RsaNI	GTAC	3 cut(s)	187, 392, 778
RseI	CAYNNNNRTG	2 cut(s)	861, 956
SacII	CCGCGG	1 cut(s)	295
SaqAI	TTAA	5 cut(s)	543, 699, 1215, 1223, 1242
SatI	GCNGC	5 cut(s)	292, 295, 487, 690, 1112
Sau3AI	GATC	4 cut(s)	45, 535, 595, 868
ScrFI	CCNGG	4 cut(s)	247, 324, 786, 1008
SduI	GDGCHC	4 cut(s)	555, 661, 1088, 1175
SfaNI	GCATC	1 cut(s)	203
Sfr303I	CCGCGG	1 cut(s)	295
SgrBI	CCGCGG	1 cut(s)	295
SmiMI	CAYNNNNRTG	2 cut(s)	861, 956
SmlI	CTYRAG	1 cut(s)	900
SmoI	CTYRAG	1 cut(s)	900
Sse9I	AATT	3 cut(s)	383, 1001, 1239
SsiI	CCGC	3 cut(s)	292, 294, 690
SspMI	CTAG	6 cut(s)	267, 725, 794, 1206, 1230, 1235
StyD4I	CCNGG	4 cut(s)	245, 322, 784, 1006
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	7 cut(s)	150, 470, 550, 955, 1055, 1189, 1203
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	2 cut(s)	112, 840
TasI	AATT	3 cut(s)	383, 1001, 1239
TatI	WGTACW	3 cut(s)	186, 391, 777
TauI	GCSGC	3 cut(s)	294, 297, 692
Tru1I	TTAA	5 cut(s)	543, 699, 1215, 1223, 1242
Tru9I	TTAA	5 cut(s)	543, 699, 1215, 1223, 1242
TscAI	CASTG	7 cut(s)	461, 960, 975, 1060, 1075, 1186, 1192
TseFI	GTSAC	4 cut(s)	220, 676, 1055, 1246
TseI	GCWGC	2 cut(s)	486, 1111
Tsp45I	GTSAC	4 cut(s)	220, 676, 1055, 1246
TspDTI	ATGAA	4 cut(s)	152, 272, 642, 802
TspRI	CASTG	7 cut(s)	461, 960, 975, 1060, 1075, 1186, 1192
VspI	ATTAAT	1 cut(s)	1242
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XspI	CTAG	6 cut(s)	267, 725, 794, 1206, 1230, 1235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.