Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005233

Physical Location & Seq

Genomic Coordinates Forward (+)

67682202 .. 67692537

Gene Structure 10336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG484800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAATGGGAAACCATTTTACATAAACGGATTCAATGCGTATTGGATGATGTACATGGCATCTGACCCATCTACACAGGCCAAGGTTACTTCTGCATTCCAACAGGCCTCCAAGTATAAAATGAATGTTGCTAGAACTTGGGCTTTCAGTGATGGTGTTGGGAAAGCCCTTCAAACATCGCCTGGTTCGTATAACGAAGATATGTTCAAGGGATTAGACTCTGTGATATCAGAAGCTAAAAAGTACGGTGTATATCTGATACTGAGTTTAGTGAACAACTACAACGATTTTGGGGGAAGAAAGCAATATGTGCAGTGGGCAAGGGAGCGGGGCCAATCCGTCAACAGTGATGACGACTTCTACAACAACACTGTTGTCAAAGGCTACTACAAGAACCATGTCAAGACTATTCTCACGAGAATTAATACAATAACGAATGTGGCATACAAAGATGATCCAATCATTTTCGCCTGGGAGCTAATCAATGAACCACGTTGCGAATCTGATGTCTCGGGAGCTCTTCTTCAGCAATGGATGAACGAAATGGCTGCACACTTAAAATCCATTGATGGCAACCATTTACTGGAGATAGGACTTGAAGGATTTTATGGGGCAACGACGCCGGAGAAGCAGCAATATAATCCCAATAACCAAGAGTTGGGCTCTGATTTCATAGCAACCAACTTGCTTCCACAAGTGGATTTTGCCACTATACATATCTACGCCGAGCAATGGTTATCCGGACAGAGCGAAGAGGCTCAAGCTGCTTTCGTGGATAAATGGGTGCAAGTACACATTGACGATTGTAATACAATAGTGAAGAAACCACTTATTATGGCGGAGTTCGGCAAGTCTTGGAAATATCCAGGGTTTTCCATAGAAAACAGAAACGCCTACTTTCGAAAGTTATACGACGCCGTATACAGCAGCGCCAAAAGTGGGGGAGCGTGTGTAGGTGGACTTTTCTGGCAGCTGTTTGCGCAAGGTATGGAAAACTTCGGGGACGGATACCAAGTCGTTTTAGAGGAGAGCCCGTCAACAGCTGATGTCATCGCCCAGCAGTCTCAAAGGCTCCAGTCGCTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

362

Amino Acids

40.85

Weight (kDa)

5.25

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	2 - 324	1.1e-45	GH family 5 beta-mannosidase-like
Cellulase	PF00150	2 - 286	3.9e-12	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02310 AT1G02310
fragaria_vesca	FvH4_6g08680 FvH4_6g36270 FvH4_6g36270
malus_domestica	MD09G1170400.v1.1 MD17G1156500.v1.1
prunus_persica	Prupe.3G028800_v2.0.a1
pyrus_communis	pycom09g08810
rosa_chinensis	RchiOBHm_Chr2g0148271 RchiOBHm_Chr5g0067931
rosa_laevigata	RLG00000020331 RLG00000035944
rosa_multiflora	Rmu_sc0003937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012680 Rroxscaffold_1G00013380 Rroxscaffold_2G00098950
rosa_rugosa	Rorug02G0405200 Rorug05G0386300
rosa_samantha	Rh2AG463800 Rh2BG476900 Rh2CG450600 Rh2DG485600 Rh5AG445500 Rh5BG462900 Rh5CG484800 Rh5DG476900
rosa_wichuraiana	Rw2G037810 Rw5G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	981
AccB7I	CCANNNNNTGG	2 cut(s)	583, 658
AccBSI	CCGCTC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	921
AccIII	TCCGGA	1 cut(s)	740
AciI	CCGC	2 cut(s)	328, 839
AclWI	GGATC	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	509
AcyI	GRCGYC	2 cut(s)	620, 915
AfaI	GTAC	3 cut(s)	53, 245, 792
AfiI	CCNNNNNNNGG	4 cut(s)	583, 658, 732, 939
AgsI	TTSAA	4 cut(s)	34, 173, 208, 599
AjnI	CCWGG	3 cut(s)	181, 470, 865
AluBI	AGCT	6 cut(s)	236, 478, 518, 764, 973, 1043
AluI	AGCT	6 cut(s)	236, 478, 518, 764, 973, 1043
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	2 cut(s)	514, 1068
AlwI	GGATC	1 cut(s)	449
Ama87I	CYCGRG	1 cut(s)	511
Aor13HI	TCCGGA	1 cut(s)	740
AoxI	GGCC	3 cut(s)	78, 105, 331
ApeKI	GCWGC	5 cut(s)	548, 631, 764, 927, 970
ArsI	GACNNNNNNTTYG	2 cut(s)	492, 524
AseI	ATTAAT	1 cut(s)	423
AspLEI	GCGC	2 cut(s)	932, 982
AspS9I	GGNCC	1 cut(s)	331
AsuII	TTCGAA	1 cut(s)	901
AvaI	CYCGRG	1 cut(s)	511
BanII	GRGCYC	3 cut(s)	520, 665, 1034
BauI	CACGAG	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	5 cut(s)	535, 643, 751, 939, 982
BccI	CCATC	3 cut(s)	76, 146, 563
BceAI	ACGGC	1 cut(s)	902
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	3 cut(s)	183, 472, 867
BciVI	GTATCC	1 cut(s)	1001
BcoDI	GTCTC	2 cut(s)	514, 1068
BfaI	CTAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	933
BfuI	GTATCC	1 cut(s)	1001
BisI	GCNGC	5 cut(s)	549, 632, 765, 928, 971
BlsI	GCNGC	5 cut(s)	550, 633, 766, 929, 972
Bme1390I	CCNGG	3 cut(s)	183, 472, 867
BmeT110I	CYCGRG	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	332, 1073
BmrFI	CCNGG	3 cut(s)	183, 472, 867
BmsI	GCATC	1 cut(s)	68
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
BpmI	CTGGAG	2 cut(s)	605, 1058
Bpu14I	TTCGAA	1 cut(s)	901
BpuEI	CTTGAG	1 cut(s)	744
BsaHI	GRCGYC	2 cut(s)	620, 915
BsaJI	CCNNGG	3 cut(s)	81, 471, 866
BsaWI	WCCGGW	1 cut(s)	740
BsaXI	ACNNNNNCTCC	4 cut(s)	936, 966, 1019, 1049
Bsc4I	CCNNNNNNNGG	4 cut(s)	583, 658, 732, 939
Bse1I	ACTGG	2 cut(s)	588, 1075
Bse3DI	GCAATG	2 cut(s)	536, 737
BseAI	TCCGGA	1 cut(s)	740
BseBI	CCWGG	3 cut(s)	183, 472, 867
BseDI	CCNNGG	3 cut(s)	81, 471, 866
BseGI	GGATG	2 cut(s)	51, 540
BseLI	CCNNNNNNNGG	4 cut(s)	583, 658, 732, 939
BseMI	GCAATG	2 cut(s)	536, 737
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	2 cut(s)	588, 1075
BseRI	GAGGAG	1 cut(s)	1040
BseXI	GCAGC	5 cut(s)	535, 643, 751, 939, 982
BseYI	CCCAGC	1 cut(s)	1056
BsgI	GTGCAG	2 cut(s)	332, 534
BshFI	GGCC	3 cut(s)	80, 107, 333
BsiHKAI	GWGCWC	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	511
BsiSI	CCGG	2 cut(s)	623, 741
BslFI	GGGAC	1 cut(s)	1016
BslI	CCNNNNNNNGG	4 cut(s)	583, 658, 732, 939
BsmAI	GTCTC	2 cut(s)	514, 1068
BsmFI	GGGAC	1 cut(s)	1016
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	3 cut(s)	80, 107, 333
BsoBI	CYCGRG	1 cut(s)	511
Bsp119I	TTCGAA	1 cut(s)	901
Bsp1286I	GDGCHC	3 cut(s)	520, 665, 1034
Bsp13I	TCCGGA	1 cut(s)	740
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	454
BspACI	CCGC	2 cut(s)	328, 839
BspANI	GGCC	3 cut(s)	80, 107, 333
BspCNI	CTCAG	1 cut(s)	255
BspEI	TCCGGA	1 cut(s)	740
BspLI	GGNNCC	2 cut(s)	332, 1073
BspPI	GGATC	1 cut(s)	449
BspQI	GCTCTTC	1 cut(s)	525
BspT104I	TTCGAA	1 cut(s)	901
BsrBI	CCGCTC	1 cut(s)	328
BsrDI	GCAATG	2 cut(s)	536, 737
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	588, 1075
BssECI	CCNNGG	3 cut(s)	81, 471, 866
BssMI	GATC	1 cut(s)	454
BssNAI	GTATAC	1 cut(s)	922
BssNI	GRCGYC	2 cut(s)	620, 915
BssSI	CACGAG	1 cut(s)	415
BssT1I	CCWWGG	1 cut(s)	81
Bst1107I	GTATAC	1 cut(s)	922
Bst2BI	CACGAG	1 cut(s)	415
Bst2UI	CCWGG	3 cut(s)	183, 472, 867
Bst4CI	ACNGT	3 cut(s)	248, 347, 373
Bst6I	CTCTTC	2 cut(s)	525, 747
BstACI	GRCGYC	2 cut(s)	620, 915
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstAUI	TGTACA	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	901
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	51, 540
BstH2I	RGCGCY	1 cut(s)	933
BstHHI	GCGC	2 cut(s)	932, 982
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	2 cut(s)	514, 1068
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	5 cut(s)	310, 628, 764, 979, 1078
BstNI	CCWGG	3 cut(s)	183, 472, 867
BstSCI	CCNGG	3 cut(s)	181, 470, 865
BstV1I	GCAGC	5 cut(s)	535, 643, 751, 939, 982
BstZ17I	GTATAC	1 cut(s)	922
BsuI	GTATCC	1 cut(s)	1001
BsuRI	GGCC	3 cut(s)	80, 107, 333
BtgZI	GCGATG	2 cut(s)	162, 1036
BtsCI	GGATG	2 cut(s)	51, 540
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	4 cut(s)	154, 320, 352, 369
CfoI	GCGC	2 cut(s)	932, 982
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	2 cut(s)	628, 923
Csp6I	GTAC	3 cut(s)	52, 244, 791
CviAII	CATG	2 cut(s)	55, 398
CviQI	GTAC	3 cut(s)	52, 244, 791
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
Eam1104I	CTCTTC	2 cut(s)	525, 747
EarI	CTCTTC	2 cut(s)	525, 747
EciI	GGCGGA	1 cut(s)	854
Ecl136II	GAGCTC	1 cut(s)	518
Eco130I	CCWWGG	1 cut(s)	81
Eco147I	AGGCCT	1 cut(s)	107
Eco24I	GRGCYC	3 cut(s)	520, 665, 1034
Eco32I	GATATC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	518
EcoRII	CCWGG	3 cut(s)	181, 470, 865
EcoRV	GATATC	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	3 cut(s)	520, 665, 1034
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	2 cut(s)	58, 401
FaqI	GGGAC	1 cut(s)	1016
FatI	CATG	2 cut(s)	54, 397
FauI	CCCGC	1 cut(s)	321
FblI	GTMKAC	1 cut(s)	921
Fnu4HI	GCNGC	5 cut(s)	549, 632, 765, 928, 971
FokI	GGATG	2 cut(s)	58, 547
FriOI	GRGCYC	3 cut(s)	520, 665, 1034
Fsp4HI	GCNGC	5 cut(s)	549, 632, 765, 928, 971
FspBI	CTAG	1 cut(s)	132
FspI	TGCGCA	1 cut(s)	981
GlaI	GCGC	2 cut(s)	931, 981
GluI	GCNGC	5 cut(s)	549, 632, 765, 928, 971
GsaI	CCCAGC	1 cut(s)	1060
GsuI	CTGGAG	2 cut(s)	605, 1058
HaeII	RGCGCY	1 cut(s)	933
HaeIII	GGCC	3 cut(s)	80, 107, 333
HapII	CCGG	2 cut(s)	623, 741
HgaI	GACGC	2 cut(s)	628, 923
HhaI	GCGC	2 cut(s)	932, 982
Hin1I	GRCGYC	2 cut(s)	620, 915
Hin1II	CATG	2 cut(s)	58, 401
Hin6I	GCGC	2 cut(s)	930, 980
HinP1I	GCGC	2 cut(s)	930, 980
HincII	GTYRAC	2 cut(s)	343, 1038
HindII	GTYRAC	2 cut(s)	343, 1038
HinfI	GANTC	3 cut(s)	30, 218, 500
HpaII	CCGG	2 cut(s)	623, 741
Hpy166II	GTNNAC	6 cut(s)	274, 343, 793, 922, 959, 1038
Hpy188I	TCNGA	5 cut(s)	64, 232, 258, 505, 667
Hpy188III	TCNNGA	4 cut(s)	403, 415, 513, 741
Hpy8I	GTNNAC	6 cut(s)	274, 343, 793, 922, 959, 1038
Hpy99I	CGWCG	2 cut(s)	622, 917
HpyAV	CCTTC	2 cut(s)	179, 593
HpyCH4III	ACNGT	3 cut(s)	248, 347, 373
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	4 cut(s)	95, 313, 551, 787
HpyF10VI	GCNNNNNNNGC	5 cut(s)	310, 628, 764, 979, 1078
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	493
Hsp92I	GRCGYC	2 cut(s)	620, 915
Hsp92II	CATG	2 cut(s)	58, 401
HspAI	GCGC	2 cut(s)	930, 980
Kpn2I	TCCGGA	1 cut(s)	740
Kzo9I	GATC	1 cut(s)	454
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	5 cut(s)	325, 475, 515, 944, 1077
Lsp1109I	GCAGC	5 cut(s)	535, 643, 751, 939, 982
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	456
MbiI	CCGCTC	1 cut(s)	328
MboI	GATC	1 cut(s)	454
MboII	GAAGA	6 cut(s)	209, 309, 512, 515, 764, 832
MhlI	GDGCHC	3 cut(s)	520, 665, 1034
MluCI	AATT	2 cut(s)	420, 1084
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	3 cut(s)	118, 748, 1018
MroI	TCCGGA	1 cut(s)	740
MseI	TTAA	3 cut(s)	423, 557, 1087
MspA1I	CMGCKG	2 cut(s)	973, 1043
MspI	CCGG	2 cut(s)	623, 741
MspR9I	CCNGG	3 cut(s)	183, 472, 867
Mva1269I	GAATGC	1 cut(s)	95
MvaI	CCWGG	3 cut(s)	183, 472, 867
MwoI	GCNNNNNNNGC	5 cut(s)	310, 628, 764, 979, 1078
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	2 cut(s)	58, 401
NlaIV	GGNNCC	2 cut(s)	332, 1073
NmeAIII	GCCGAG	1 cut(s)	751
NsbI	TGCGCA	1 cut(s)	981
NspV	TTCGAA	1 cut(s)	901
PceI	AGGCCT	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PctI	GAATGC	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	30, 500
PflMI	CCANNNNNTGG	2 cut(s)	583, 658
PkrI	GCNGC	5 cut(s)	550, 633, 766, 929, 972
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PshBI	ATTAAT	1 cut(s)	423
Psp124BI	GAGCTC	1 cut(s)	520
Psp6I	CCWGG	3 cut(s)	181, 470, 865
PspFI	CCCAGC	1 cut(s)	1056
PspGI	CCWGG	3 cut(s)	181, 470, 865
PspN4I	GGNNCC	2 cut(s)	332, 1073
PspPI	GGNCC	1 cut(s)	331
PvuII	CAGCTG	2 cut(s)	973, 1043
RsaI	GTAC	3 cut(s)	53, 245, 792
RsaNI	GTAC	3 cut(s)	52, 244, 791
SacI	GAGCTC	1 cut(s)	520
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	3 cut(s)	423, 557, 1087
SatI	GCNGC	5 cut(s)	549, 632, 765, 928, 971
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	3 cut(s)	183, 472, 867
SduI	GDGCHC	3 cut(s)	520, 665, 1034
SfaNI	GCATC	1 cut(s)	68
SfuI	TTCGAA	1 cut(s)	901
SmlI	CTYRAG	1 cut(s)	759
SmoI	CTYRAG	1 cut(s)	759
Sse9I	AATT	2 cut(s)	420, 1084
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	2 cut(s)	328, 839
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	520
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	3 cut(s)	181, 470, 865
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	3 cut(s)	248, 347, 373
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	1 cut(s)	901
TasI	AATT	2 cut(s)	420, 1084
TatI	WGTACW	2 cut(s)	51, 790
TfiI	GAWTC	2 cut(s)	30, 500
Tru1I	TTAA	3 cut(s)	423, 557, 1087
Tru9I	TTAA	3 cut(s)	423, 557, 1087
TscAI	CASTG	4 cut(s)	154, 320, 352, 376
TseI	GCWGC	5 cut(s)	548, 631, 764, 927, 970
TspDTI	ATGAA	5 cut(s)	17, 137, 501, 551, 661
TspGWI	ACGGA	3 cut(s)	42, 328, 1020
TspRI	CASTG	4 cut(s)	154, 320, 352, 376
Van91I	CCANNNNNTGG	2 cut(s)	583, 658
VspI	ATTAAT	1 cut(s)	423
XmiI	GTMKAC	1 cut(s)	921
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.