Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005233

Physical Location & Seq

Genomic Coordinates Reverse (-)

15524593 .. 15526959

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00012680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTTTGGAAAGGGTTTTGTTTGGTTAGTTTTACTCTTTTTGTCATTTTGCTTAAACCCTGCACAAGCTGACTCTAGTTTTGGTGGAACAAAAGGAACCCGATTTGTTATGAATGGGAAACCATTTTACATAAACGGATTCAATGCGTATTGGATGATGTACATGGTATCTGACCCATCTACACAGGCCAAAGTTACTTCTGCATTCCAACAAGCCTCCAAGTATAAGATGAATGTTGCTAGAACTTGGGCTTTCAGTGATGGTGTTGGGAAAGCCCTTCAAACATCGCCTGGTTCATATAACGAAGATATGTTCAAGGGATTAGACTTTGTGATATCAGAAGCTAAAAAGTACGGTGTATATCTGATACTGAGTTTAGTTAACAACTATAACGATTTTGGGGGAAGAAAGCAATATGTGCAGTGGGCAAGGGAGCGGGGCCAATCCCTCAACAGTGATGACGACTTCTACAACAACACTGTTGTCAAAGGCTACTACAAGAACCATGTCAAGACTATTCTAACGAGAATTAATACAATAACGAATGTGGCATACAAAGATGATCCAATCATTTTCGCATGGGAGCTAATCAATGAACCCCGTTGCGAATCTGATGTCTCGGGAGCTCTTCTTCAGCAATGGGTGAACGAAATGGCTGCACATTTAAAATCCATTGATGGCAACCATTTACTGGAGATAGGACTTGAAGGATTTTATGGGGCAACGACGCCGGAGAAGCAGCAATATAATCCCAATAACCAAGAGTTGGGCTCTGATTTCATAGCAACCAACTTACTTCCACAAGTGGATTTTGCCACTATACATATCTACGCCGAGCAATGGTTATCCGGACAGAGCGAAGAGGCTCAAGCTGCTTTCGTGGATAAATGGGTGCAAGTACACATTGACGATTGTAATACAATAGTGAAGAAACCACTTATTATGGCGGAGTTCGGCAAGTCTTGGAAATATCCAGGGTACTCCATAGAAAACAGAAACGCCTACTTTGGAAAGCTATACGACGCCGTATACAGCAGCGCCAAAAGTGGGGGAGCGTGTGTAGGTGGACTTTTCTGGCAGCTGTTTGCGCAAGGTATGGAAAACTTCGGGGACGGATACCAAGTCGTTTTAGAGGAGAGCCCGTCAACTGCTGATGTCATCGCCCAGCAGTCTCAAAGGCTCCAGTCGCTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

398

Amino Acids

44.76

Weight (kDa)

5.37

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	27 - 360	2.9e-48	GH family 5 beta-mannosidase-like
Cellulase	PF00150	38 - 321	8.5e-12	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02310 AT1G02310
fragaria_vesca	FvH4_6g08680 FvH4_6g36270 FvH4_6g36270
malus_domestica	MD09G1170400.v1.1 MD17G1156500.v1.1
prunus_persica	Prupe.3G028800_v2.0.a1
pyrus_communis	pycom09g08810
rosa_chinensis	RchiOBHm_Chr2g0148271 RchiOBHm_Chr5g0067931
rosa_laevigata	RLG00000020331 RLG00000035944
rosa_multiflora	Rmu_sc0003937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012680 Rroxscaffold_1G00013380 Rroxscaffold_2G00098950
rosa_rugosa	Rorug02G0405200 Rorug05G0386300
rosa_samantha	Rh2AG463800 Rh2BG476900 Rh2CG450600 Rh2DG485600 Rh5AG445500 Rh5BG462900 Rh5CG484800 Rh5DG476900
rosa_wichuraiana	Rw2G037810 Rw5G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1089
AccB7I	CCANNNNNTGG	2 cut(s)	691, 766
AccBSI	CCGCTC	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	1029
AccIII	TCCGGA	1 cut(s)	848
AciI	CCGC	2 cut(s)	436, 947
AclWI	GGATC	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	617
AcyI	GRCGYC	2 cut(s)	728, 1023
AfaI	GTAC	4 cut(s)	161, 353, 900, 980
AfiI	CCNNNNNNNGG	4 cut(s)	691, 766, 840, 1047
AgsI	TTSAA	4 cut(s)	142, 281, 316, 707
AjnI	CCWGG	2 cut(s)	289, 973
AluBI	AGCT	7 cut(s)	68, 344, 586, 626, 872, 1015, 1081
AluI	AGCT	7 cut(s)	68, 344, 586, 626, 872, 1015, 1081
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	2 cut(s)	622, 1176
AlwI	GGATC	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	619
Aor13HI	TCCGGA	1 cut(s)	848
AoxI	GGCC	2 cut(s)	186, 439
ApeKI	GCWGC	5 cut(s)	656, 739, 872, 1035, 1078
ArsI	GACNNNNNNTTYG	4 cut(s)	62, 94, 600, 632
AseI	ATTAAT	1 cut(s)	531
AspLEI	GCGC	2 cut(s)	1040, 1090
AspS9I	GGNCC	1 cut(s)	439
AsuHPI	GGTGA	1 cut(s)	655
AvaI	CYCGRG	1 cut(s)	619
BanII	GRGCYC	3 cut(s)	628, 773, 1142
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	5 cut(s)	643, 751, 859, 1047, 1090
BccI	CCATC	3 cut(s)	184, 254, 671
BceAI	ACGGC	1 cut(s)	1010
BcgI	CGANNNNNNTGC	2 cut(s)	638, 672
BciT130I	CCWGG	2 cut(s)	291, 975
BciVI	GTATCC	1 cut(s)	1109
BcoDI	GTCTC	2 cut(s)	622, 1176
BfaI	CTAG	2 cut(s)	75, 240
BfoI	RGCGCY	1 cut(s)	1041
BfuI	GTATCC	1 cut(s)	1109
BisI	GCNGC	5 cut(s)	657, 740, 873, 1036, 1079
BlsI	GCNGC	5 cut(s)	658, 741, 874, 1037, 1080
Bme1390I	CCNGG	2 cut(s)	291, 975
BmeT110I	CYCGRG	1 cut(s)	619
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	3 cut(s)	97, 440, 1181
BmrFI	CCNGG	2 cut(s)	291, 975
BplI	GAGNNNNNCTC	2 cut(s)	755, 787
BpmI	CTGGAG	2 cut(s)	713, 1166
BpuEI	CTTGAG	1 cut(s)	852
BsaHI	GRCGYC	2 cut(s)	728, 1023
BsaJI	CCNNGG	1 cut(s)	974
BsaWI	WCCGGW	1 cut(s)	848
BsaXI	ACNNNNNCTCC	4 cut(s)	1044, 1074, 1127, 1157
Bsc4I	CCNNNNNNNGG	4 cut(s)	691, 766, 840, 1047
Bse1I	ACTGG	2 cut(s)	696, 1183
Bse3DI	GCAATG	2 cut(s)	644, 845
BseAI	TCCGGA	1 cut(s)	848
BseBI	CCWGG	2 cut(s)	291, 975
BseDI	CCNNGG	1 cut(s)	974
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	4 cut(s)	691, 766, 840, 1047
BseMI	GCAATG	2 cut(s)	644, 845
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	2 cut(s)	696, 1183
BseRI	GAGGAG	1 cut(s)	1148
BseXI	GCAGC	5 cut(s)	643, 751, 859, 1047, 1090
BseYI	CCCAGC	1 cut(s)	1164
BsgI	GTGCAG	3 cut(s)	45, 440, 642
BshFI	GGCC	2 cut(s)	188, 441
BsiHKAI	GWGCWC	1 cut(s)	628
BsiHKCI	CYCGRG	1 cut(s)	619
BsiSI	CCGG	2 cut(s)	731, 849
BslFI	GGGAC	1 cut(s)	1124
BslI	CCNNNNNNNGG	4 cut(s)	691, 766, 840, 1047
BsmAI	GTCTC	2 cut(s)	622, 1176
BsmFI	GGGAC	1 cut(s)	1124
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	188, 441
BsoBI	CYCGRG	1 cut(s)	619
Bsp1286I	GDGCHC	3 cut(s)	628, 773, 1142
Bsp13I	TCCGGA	1 cut(s)	848
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	562
BspACI	CCGC	2 cut(s)	436, 947
BspANI	GGCC	2 cut(s)	188, 441
BspCNI	CTCAG	1 cut(s)	363
BspEI	TCCGGA	1 cut(s)	848
BspLI	GGNNCC	3 cut(s)	97, 440, 1181
BspPI	GGATC	1 cut(s)	557
BspQI	GCTCTTC	1 cut(s)	633
BsrBI	CCGCTC	1 cut(s)	436
BsrDI	GCAATG	2 cut(s)	644, 845
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	696, 1183
BssECI	CCNNGG	1 cut(s)	974
BssMI	GATC	1 cut(s)	562
BssNAI	GTATAC	1 cut(s)	1030
BssNI	GRCGYC	2 cut(s)	728, 1023
Bst1107I	GTATAC	1 cut(s)	1030
Bst2UI	CCWGG	2 cut(s)	291, 975
Bst4CI	ACNGT	3 cut(s)	356, 455, 481
Bst6I	CTCTTC	2 cut(s)	633, 855
BstACI	GRCGYC	2 cut(s)	728, 1023
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstAUI	TGTACA	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	1041
BstHHI	GCGC	2 cut(s)	1040, 1090
BstKTI	GATC	1 cut(s)	565
BstMAI	GTCTC	2 cut(s)	622, 1176
BstMBI	GATC	1 cut(s)	562
BstMWI	GCNNNNNNNGC	5 cut(s)	418, 736, 872, 1087, 1186
BstNI	CCWGG	2 cut(s)	291, 975
BstSCI	CCNGG	2 cut(s)	289, 973
BstV1I	GCAGC	5 cut(s)	643, 751, 859, 1047, 1090
BstZ17I	GTATAC	1 cut(s)	1030
BsuI	GTATCC	1 cut(s)	1109
BsuRI	GGCC	2 cut(s)	188, 441
BtgZI	GCGATG	2 cut(s)	270, 1144
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	4 cut(s)	262, 428, 460, 477
CfoI	GCGC	2 cut(s)	1040, 1090
Cfr13I	GGNCC	1 cut(s)	439
CseI	GACGC	2 cut(s)	736, 1031
Csp6I	GTAC	4 cut(s)	160, 352, 899, 979
CviAII	CATG	3 cut(s)	163, 506, 579
CviQI	GTAC	4 cut(s)	160, 352, 899, 979
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
DraI	TTTAAA	1 cut(s)	666
Eam1104I	CTCTTC	2 cut(s)	633, 855
EarI	CTCTTC	2 cut(s)	633, 855
EciI	GGCGGA	1 cut(s)	962
Ecl136II	GAGCTC	1 cut(s)	626
Eco24I	GRGCYC	3 cut(s)	628, 773, 1142
Eco32I	GATATC	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	289, 973
EcoRV	GATATC	1 cut(s)	336
EcoT38I	GRGCYC	3 cut(s)	628, 773, 1142
FaeI	CATG	3 cut(s)	166, 509, 582
FaqI	GGGAC	1 cut(s)	1124
FatI	CATG	3 cut(s)	162, 505, 578
FauI	CCCGC	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	1029
Fnu4HI	GCNGC	5 cut(s)	657, 740, 873, 1036, 1079
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	3 cut(s)	628, 773, 1142
Fsp4HI	GCNGC	5 cut(s)	657, 740, 873, 1036, 1079
FspBI	CTAG	2 cut(s)	75, 240
FspI	TGCGCA	1 cut(s)	1089
GlaI	GCGC	2 cut(s)	1039, 1089
GluI	GCNGC	5 cut(s)	657, 740, 873, 1036, 1079
GsaI	CCCAGC	1 cut(s)	1168
GsuI	CTGGAG	2 cut(s)	713, 1166
HaeII	RGCGCY	1 cut(s)	1041
HaeIII	GGCC	2 cut(s)	188, 441
HapII	CCGG	2 cut(s)	731, 849
HgaI	GACGC	2 cut(s)	736, 1031
HhaI	GCGC	2 cut(s)	1040, 1090
Hin1I	GRCGYC	2 cut(s)	728, 1023
Hin1II	CATG	3 cut(s)	166, 509, 582
Hin6I	GCGC	2 cut(s)	1038, 1088
HinP1I	GCGC	2 cut(s)	1038, 1088
HincII	GTYRAC	2 cut(s)	382, 1146
HindII	GTYRAC	2 cut(s)	382, 1146
HinfI	GANTC	3 cut(s)	71, 138, 608
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	2 cut(s)	731, 849
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	6 cut(s)	382, 646, 901, 1030, 1067, 1146
Hpy188I	TCNGA	5 cut(s)	172, 340, 366, 613, 775
Hpy188III	TCNNGA	3 cut(s)	511, 621, 849
Hpy8I	GTNNAC	6 cut(s)	382, 646, 901, 1030, 1067, 1146
Hpy99I	CGWCG	2 cut(s)	730, 1025
HpyAV	CCTTC	2 cut(s)	287, 701
HpyCH4III	ACNGT	3 cut(s)	356, 455, 481
HpyCH4V	TGCA	5 cut(s)	62, 203, 421, 659, 895
HpyF10VI	GCNNNNNNNGC	5 cut(s)	418, 736, 872, 1087, 1186
HpyF3I	CTNAG	1 cut(s)	371
Hsp92I	GRCGYC	2 cut(s)	728, 1023
Hsp92II	CATG	3 cut(s)	166, 509, 582
HspAI	GCGC	2 cut(s)	1038, 1088
Kpn2I	TCCGGA	1 cut(s)	848
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	1 cut(s)	562
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	5 cut(s)	433, 583, 623, 1052, 1185
Lsp1109I	GCAGC	5 cut(s)	643, 751, 859, 1047, 1090
MaeI	CTAG	2 cut(s)	75, 240
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	564
MbiI	CCGCTC	1 cut(s)	436
MboI	GATC	1 cut(s)	562
MboII	GAAGA	6 cut(s)	317, 417, 620, 623, 872, 940
MhlI	GDGCHC	3 cut(s)	628, 773, 1142
MluCI	AATT	2 cut(s)	528, 1192
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	4 cut(s)	226, 458, 856, 1126
MroI	TCCGGA	1 cut(s)	848
MseI	TTAA	5 cut(s)	53, 381, 531, 665, 1195
MspA1I	CMGCKG	1 cut(s)	1081
MspI	CCGG	2 cut(s)	731, 849
MspR9I	CCNGG	2 cut(s)	291, 975
Mva1269I	GAATGC	1 cut(s)	203
MvaI	CCWGG	2 cut(s)	291, 975
MwoI	GCNNNNNNNGC	5 cut(s)	418, 736, 872, 1087, 1186
NdeII	GATC	1 cut(s)	562
NlaIII	CATG	3 cut(s)	166, 509, 582
NlaIV	GGNNCC	3 cut(s)	97, 440, 1181
NmeAIII	GCCGAG	1 cut(s)	859
NsbI	TGCGCA	1 cut(s)	1089
PciSI	GCTCTTC	1 cut(s)	633
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	138, 608
PflMI	CCANNNNNTGG	2 cut(s)	691, 766
PkrI	GCNGC	5 cut(s)	658, 741, 874, 1037, 1080
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PshBI	ATTAAT	1 cut(s)	531
Psp124BI	GAGCTC	1 cut(s)	628
Psp6I	CCWGG	2 cut(s)	289, 973
PspFI	CCCAGC	1 cut(s)	1164
PspGI	CCWGG	2 cut(s)	289, 973
PspN4I	GGNNCC	3 cut(s)	97, 440, 1181
PspPI	GGNCC	1 cut(s)	439
PvuII	CAGCTG	1 cut(s)	1081
RsaI	GTAC	4 cut(s)	161, 353, 900, 980
RsaNI	GTAC	4 cut(s)	160, 352, 899, 979
SacI	GAGCTC	1 cut(s)	628
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	5 cut(s)	53, 381, 531, 665, 1195
SatI	GCNGC	5 cut(s)	657, 740, 873, 1036, 1079
Sau3AI	GATC	1 cut(s)	562
Sau96I	GGNCC	1 cut(s)	439
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	291, 975
SduI	GDGCHC	3 cut(s)	628, 773, 1142
SetI	ASST	9 cut(s)	70, 346, 588, 628, 874, 1017, 1066, 1083, 1096
SmlI	CTYRAG	1 cut(s)	867
SmoI	CTYRAG	1 cut(s)	867
Sse9I	AATT	2 cut(s)	528, 1192
SsiI	CCGC	2 cut(s)	436, 947
SspMI	CTAG	2 cut(s)	75, 240
SstI	GAGCTC	1 cut(s)	628
StyD4I	CCNGG	2 cut(s)	289, 973
TaaI	ACNGT	3 cut(s)	356, 455, 481
TasI	AATT	2 cut(s)	528, 1192
TatI	WGTACW	2 cut(s)	159, 898
TfiI	GAWTC	2 cut(s)	138, 608
Tru1I	TTAA	5 cut(s)	53, 381, 531, 665, 1195
Tru9I	TTAA	5 cut(s)	53, 381, 531, 665, 1195
TscAI	CASTG	4 cut(s)	262, 428, 460, 484
TseI	GCWGC	5 cut(s)	656, 739, 872, 1035, 1078
TspDTI	ATGAA	5 cut(s)	125, 245, 285, 609, 769
TspGWI	ACGGA	2 cut(s)	150, 1128
TspRI	CASTG	4 cut(s)	262, 428, 460, 484
Van91I	CCANNNNNTGG	2 cut(s)	691, 766
VspI	ATTAAT	1 cut(s)	531
XmiI	GTMKAC	1 cut(s)	1029
XspI	CTAG	2 cut(s)	75, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.