Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005233

Physical Location & Seq

Genomic Coordinates Forward (+)

75377708 .. 75384358

Gene Structure 6651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG476900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCTGACTCTAGTTTTGGCGGAACCAACGGAACCCGATTTGTTATGAATGGGAAACCATTTTACATAAACGGATTCAATGCGTATTGGATGATGTACATGGCATCTGACCCATCTACACAGGCCAAGGTTACTTCTGCATTCCAACAGGCCTCCAAGTATAAGATGACTGTTGCTAGAACTTGGGCTTTCAGTGATGGTGTTGGGAAAGCCCTTCAAACATCGCCTGGTTCGTATAACGAAGATATGTTCAAGGGATTAGACTTTGTGATATCAGAAGCTAAAAAGTACGGTGTATATCTGATACTGAGTTTAGTGAACAACTACAACGATTTTGGGGGAAGAAAGCAATATGTGCAGTGGGCAAGGGAGCGGGGCCAATCCGTCAACAGTGATGACGACTTCTACAACAACACTGTTGTCAAAGGCTACTACAAGAACCATGTGAAGACTATTCTCACGAGAATTAATACAATAACGAATGTGGCATACAAAGATGATCCAATCATTTTCGCATGGGAGCTAATCAATGAACCACGTTGCGAATCTGATGTCTCGGGAGCTCTTCTTCAGCAATGGGTGAACGAAATGGCTGTACACTTAAAATCCATTGATGGCAACCATTTACTGGAGATAGGACTTGAAGGATTTTATGGGGCAACGACGCCGGAGAAGCAGCAATATAATCCCAATAACCAAGAGTTGGGCTCTGATTTCATAGCAACCAACTTGCTTCCACAAGTGGATTTTGCCACTATACATATCTACGCCGAGCAATGGTTATCCGGGCAGAGCGAAGAGGCTCAAGCTGCTTTCGTGGATAAATGGGTGCAAGTACACATTGACGATTGTAATACAATAGTGAAGAAACCACTTATTATGGCGGAGTTCGGCAAGTCATGGAAATATCCAGGGTACTCCATAGAAAACAGAAACGCCTACTTTGGAAAGCTATACGACGCCGTATACAGCAGCGCCAAAAGTGGGGGAGCGTGTGTAGGTGGACTTTTCTGGCAGCTGTTTGCGCAAGGTATGGAAAACTTCGGGGACGGATACCAAGTCGTTTTAGAGGAGAGCCCGTCAACTGCTGATGTCATCGCCCAGCAGTCTCAAAGGCTCCAGTCGCTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

377

Amino Acids

42.34

Weight (kDa)

5.16

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	6 - 339	3.1e-48	GH family 5 beta-mannosidase-like
Cellulase	PF00150	17 - 300	1.4e-10	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02310 AT1G02310
fragaria_vesca	FvH4_6g08680 FvH4_6g36270 FvH4_6g36270
malus_domestica	MD09G1170400.v1.1 MD17G1156500.v1.1
prunus_persica	Prupe.3G028800_v2.0.a1
pyrus_communis	pycom09g08810
rosa_chinensis	RchiOBHm_Chr2g0148271 RchiOBHm_Chr5g0067931
rosa_laevigata	RLG00000020331 RLG00000035944
rosa_multiflora	Rmu_sc0003937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012680 Rroxscaffold_1G00013380 Rroxscaffold_2G00098950
rosa_rugosa	Rorug02G0405200 Rorug05G0386300
rosa_samantha	Rh2AG463800 Rh2BG476900 Rh2CG450600 Rh2DG485600 Rh5AG445500 Rh5BG462900 Rh5CG484800 Rh5DG476900
rosa_wichuraiana	Rw2G037810 Rw5G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1026
AccB7I	CCANNNNNTGG	2 cut(s)	628, 703
AccBSI	CCGCTC	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	966
AciI	CCGC	3 cut(s)	21, 373, 884
AclWI	GGATC	1 cut(s)	494
AcuI	CTGAAG	1 cut(s)	554
AcyI	GRCGYC	2 cut(s)	665, 960
AfaI	GTAC	5 cut(s)	98, 290, 597, 837, 917
AfiI	CCNNNNNNNGG	4 cut(s)	628, 703, 777, 984
AgsI	TTSAA	4 cut(s)	79, 218, 253, 644
AjnI	CCWGG	2 cut(s)	226, 910
AluBI	AGCT	6 cut(s)	281, 523, 563, 809, 952, 1018
AluI	AGCT	6 cut(s)	281, 523, 563, 809, 952, 1018
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	2 cut(s)	559, 1113
AlwI	GGATC	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	556
AoxI	GGCC	3 cut(s)	123, 150, 376
ApeKI	GCWGC	4 cut(s)	676, 809, 972, 1015
ArsI	GACNNNNNNTTYG	3 cut(s)	31, 537, 569
AseI	ATTAAT	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	977, 1027
AspS9I	GGNCC	1 cut(s)	376
AsuC2I	CCSGG	1 cut(s)	787
AsuHPI	GGTGA	1 cut(s)	592
AvaI	CYCGRG	1 cut(s)	556
BanII	GRGCYC	3 cut(s)	565, 710, 1079
BauI	CACGAG	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	4 cut(s)	688, 796, 984, 1027
BccI	CCATC	3 cut(s)	121, 191, 608
BceAI	ACGGC	1 cut(s)	947
BciT130I	CCWGG	2 cut(s)	228, 912
BciVI	GTATCC	1 cut(s)	1046
BcnI	CCSGG	1 cut(s)	787
BcoDI	GTCTC	2 cut(s)	559, 1113
BfaI	CTAG	2 cut(s)	12, 177
BfoI	RGCGCY	1 cut(s)	978
BfuI	GTATCC	1 cut(s)	1046
BisI	GCNGC	4 cut(s)	677, 810, 973, 1016
BlsI	GCNGC	4 cut(s)	678, 811, 974, 1017
Bme1390I	CCNGG	3 cut(s)	228, 787, 912
BmeT110I	CYCGRG	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	4 cut(s)	25, 34, 377, 1118
BmrFI	CCNGG	3 cut(s)	228, 787, 912
BmsI	GCATC	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	455
BplI	GAGNNNNNCTC	2 cut(s)	692, 724
BpmI	CTGGAG	2 cut(s)	650, 1103
BpuEI	CTTGAG	1 cut(s)	789
BpuMI	CCSGG	1 cut(s)	787
BsaHI	GRCGYC	2 cut(s)	665, 960
BsaJI	CCNNGG	2 cut(s)	126, 911
BsaXI	ACNNNNNCTCC	4 cut(s)	981, 1011, 1064, 1094
Bsc4I	CCNNNNNNNGG	4 cut(s)	628, 703, 777, 984
Bse1I	ACTGG	2 cut(s)	633, 1120
Bse3DI	GCAATG	2 cut(s)	581, 782
BseBI	CCWGG	2 cut(s)	228, 912
BseDI	CCNNGG	2 cut(s)	126, 911
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	4 cut(s)	628, 703, 777, 984
BseMI	GCAATG	2 cut(s)	581, 782
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	2 cut(s)	633, 1120
BseRI	GAGGAG	1 cut(s)	1085
BseXI	GCAGC	4 cut(s)	688, 796, 984, 1027
BseYI	CCCAGC	1 cut(s)	1101
BsgI	GTGCAG	1 cut(s)	377
BshFI	GGCC	3 cut(s)	125, 152, 378
BsiHKAI	GWGCWC	1 cut(s)	565
BsiHKCI	CYCGRG	1 cut(s)	556
BsiSI	CCGG	2 cut(s)	668, 786
BslFI	GGGAC	1 cut(s)	1061
BslI	CCNNNNNNNGG	4 cut(s)	628, 703, 777, 984
BsmAI	GTCTC	2 cut(s)	559, 1113
BsmFI	GGGAC	1 cut(s)	1061
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	3 cut(s)	125, 152, 378
BsoBI	CYCGRG	1 cut(s)	556
Bsp1286I	GDGCHC	3 cut(s)	565, 710, 1079
Bsp1407I	TGTACA	2 cut(s)	96, 595
Bsp143I	GATC	1 cut(s)	499
BspACI	CCGC	3 cut(s)	21, 373, 884
BspANI	GGCC	3 cut(s)	125, 152, 378
BspCNI	CTCAG	1 cut(s)	300
BspLI	GGNNCC	4 cut(s)	25, 34, 377, 1118
BspPI	GGATC	1 cut(s)	494
BspQI	GCTCTTC	1 cut(s)	570
BsrBI	CCGCTC	1 cut(s)	373
BsrDI	GCAATG	2 cut(s)	581, 782
BsrGI	TGTACA	2 cut(s)	96, 595
BsrI	ACTGG	2 cut(s)	633, 1120
BssECI	CCNNGG	2 cut(s)	126, 911
BssMI	GATC	1 cut(s)	499
BssNAI	GTATAC	1 cut(s)	967
BssNI	GRCGYC	2 cut(s)	665, 960
BssSI	CACGAG	1 cut(s)	460
BssT1I	CCWWGG	1 cut(s)	126
Bst1107I	GTATAC	1 cut(s)	967
Bst2BI	CACGAG	1 cut(s)	460
Bst2UI	CCWGG	2 cut(s)	228, 912
Bst4CI	ACNGT	4 cut(s)	172, 293, 392, 418
Bst6I	CTCTTC	2 cut(s)	570, 792
BstACI	GRCGYC	2 cut(s)	665, 960
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstAUI	TGTACA	2 cut(s)	96, 595
BstDEI	CTNAG	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	978
BstHHI	GCGC	2 cut(s)	977, 1027
BstKTI	GATC	1 cut(s)	502
BstMAI	GTCTC	2 cut(s)	559, 1113
BstMBI	GATC	1 cut(s)	499
BstMWI	GCNNNNNNNGC	5 cut(s)	355, 673, 809, 1024, 1123
BstNI	CCWGG	2 cut(s)	228, 912
BstSCI	CCNGG	3 cut(s)	226, 785, 910
BstV1I	GCAGC	4 cut(s)	688, 796, 984, 1027
BstV2I	GAAGAC	1 cut(s)	455
BstZ17I	GTATAC	1 cut(s)	967
BsuI	GTATCC	1 cut(s)	1046
BsuRI	GGCC	3 cut(s)	125, 152, 378
BtgZI	GCGATG	2 cut(s)	207, 1081
BtsCI	GGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	4 cut(s)	199, 365, 397, 414
CfoI	GCGC	2 cut(s)	977, 1027
Cfr13I	GGNCC	1 cut(s)	376
CseI	GACGC	2 cut(s)	673, 968
Csp6I	GTAC	5 cut(s)	97, 289, 596, 836, 916
CviAII	CATG	4 cut(s)	100, 443, 516, 900
CviQI	GTAC	5 cut(s)	97, 289, 596, 836, 916
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
Eam1104I	CTCTTC	2 cut(s)	570, 792
EarI	CTCTTC	2 cut(s)	570, 792
EciI	GGCGGA	2 cut(s)	36, 899
Ecl136II	GAGCTC	1 cut(s)	563
Eco130I	CCWWGG	1 cut(s)	126
Eco147I	AGGCCT	1 cut(s)	152
Eco24I	GRGCYC	3 cut(s)	565, 710, 1079
Eco32I	GATATC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	554
Eco88I	CYCGRG	1 cut(s)	556
EcoICRI	GAGCTC	1 cut(s)	563
EcoRII	CCWGG	2 cut(s)	226, 910
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	3 cut(s)	565, 710, 1079
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	4 cut(s)	103, 446, 519, 903
FaqI	GGGAC	1 cut(s)	1061
FatI	CATG	4 cut(s)	99, 442, 515, 899
FauI	CCCGC	1 cut(s)	366
FblI	GTMKAC	1 cut(s)	966
Fnu4HI	GCNGC	4 cut(s)	677, 810, 973, 1016
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	3 cut(s)	565, 710, 1079
Fsp4HI	GCNGC	4 cut(s)	677, 810, 973, 1016
FspBI	CTAG	2 cut(s)	12, 177
FspI	TGCGCA	1 cut(s)	1026
GlaI	GCGC	2 cut(s)	976, 1026
GluI	GCNGC	4 cut(s)	677, 810, 973, 1016
GsaI	CCCAGC	1 cut(s)	1105
GsuI	CTGGAG	2 cut(s)	650, 1103
HaeII	RGCGCY	1 cut(s)	978
HaeIII	GGCC	3 cut(s)	125, 152, 378
HapII	CCGG	2 cut(s)	668, 786
HgaI	GACGC	2 cut(s)	673, 968
HhaI	GCGC	2 cut(s)	977, 1027
Hin1I	GRCGYC	2 cut(s)	665, 960
Hin1II	CATG	4 cut(s)	103, 446, 519, 903
Hin6I	GCGC	2 cut(s)	975, 1025
HinP1I	GCGC	2 cut(s)	975, 1025
HincII	GTYRAC	2 cut(s)	388, 1083
HindII	GTYRAC	2 cut(s)	388, 1083
HinfI	GANTC	3 cut(s)	8, 75, 545
HpaII	CCGG	2 cut(s)	668, 786
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	8 cut(s)	319, 388, 583, 598, 838, 967, 1004, 1083
Hpy188I	TCNGA	5 cut(s)	109, 277, 303, 550, 712
Hpy188III	TCNNGA	2 cut(s)	460, 558
Hpy8I	GTNNAC	8 cut(s)	319, 388, 583, 598, 838, 967, 1004, 1083
Hpy99I	CGWCG	2 cut(s)	667, 962
HpyAV	CCTTC	2 cut(s)	224, 638
HpyCH4III	ACNGT	4 cut(s)	172, 293, 392, 418
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	3 cut(s)	140, 358, 832
HpyF10VI	GCNNNNNNNGC	5 cut(s)	355, 673, 809, 1024, 1123
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	538
Hsp92I	GRCGYC	2 cut(s)	665, 960
Hsp92II	CATG	4 cut(s)	103, 446, 519, 903
HspAI	GCGC	2 cut(s)	975, 1025
Kzo9I	GATC	1 cut(s)	499
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	5 cut(s)	370, 520, 560, 989, 1122
Lsp1109I	GCAGC	4 cut(s)	688, 796, 984, 1027
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	2 cut(s)	12, 177
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	501
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	1 cut(s)	499
MboII	GAAGA	7 cut(s)	254, 354, 460, 557, 560, 809, 877
MhlI	GDGCHC	3 cut(s)	565, 710, 1079
MluCI	AATT	2 cut(s)	465, 1129
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	3 cut(s)	163, 793, 1063
MseI	TTAA	3 cut(s)	468, 602, 1132
MspA1I	CMGCKG	1 cut(s)	1018
MspI	CCGG	2 cut(s)	668, 786
MspR9I	CCNGG	3 cut(s)	228, 787, 912
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	2 cut(s)	228, 912
MwoI	GCNNNNNNNGC	5 cut(s)	355, 673, 809, 1024, 1123
NciI	CCSGG	1 cut(s)	787
NdeII	GATC	1 cut(s)	499
NlaIII	CATG	4 cut(s)	103, 446, 519, 903
NlaIV	GGNNCC	4 cut(s)	25, 34, 377, 1118
NmeAIII	GCCGAG	1 cut(s)	796
NsbI	TGCGCA	1 cut(s)	1026
PceI	AGGCCT	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	230
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	75, 545
PflMI	CCANNNNNTGG	2 cut(s)	628, 703
PkrI	GCNGC	4 cut(s)	678, 811, 974, 1017
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PshBI	ATTAAT	1 cut(s)	468
Psp124BI	GAGCTC	1 cut(s)	565
Psp6I	CCWGG	2 cut(s)	226, 910
PspFI	CCCAGC	1 cut(s)	1101
PspGI	CCWGG	2 cut(s)	226, 910
PspN4I	GGNNCC	4 cut(s)	25, 34, 377, 1118
PspPI	GGNCC	1 cut(s)	376
PvuII	CAGCTG	1 cut(s)	1018
RsaI	GTAC	5 cut(s)	98, 290, 597, 837, 917
RsaNI	GTAC	5 cut(s)	97, 289, 596, 836, 916
SacI	GAGCTC	1 cut(s)	565
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	3 cut(s)	468, 602, 1132
SatI	GCNGC	4 cut(s)	677, 810, 973, 1016
Sau3AI	GATC	1 cut(s)	499
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	3 cut(s)	228, 787, 912
SduI	GDGCHC	3 cut(s)	565, 710, 1079
SfaNI	GCATC	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	804
SmoI	CTYRAG	1 cut(s)	804
Sse9I	AATT	2 cut(s)	465, 1129
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	3 cut(s)	21, 373, 884
SspMI	CTAG	2 cut(s)	12, 177
SstI	GAGCTC	1 cut(s)	565
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	3 cut(s)	226, 785, 910
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	4 cut(s)	172, 293, 392, 418
TaiI	ACGT	1 cut(s)	541
TasI	AATT	2 cut(s)	465, 1129
TatI	WGTACW	3 cut(s)	96, 595, 835
TfiI	GAWTC	2 cut(s)	75, 545
Tru1I	TTAA	3 cut(s)	468, 602, 1132
Tru9I	TTAA	3 cut(s)	468, 602, 1132
TscAI	CASTG	4 cut(s)	199, 365, 397, 421
TseI	GCWGC	4 cut(s)	676, 809, 972, 1015
TspDTI	ATGAA	3 cut(s)	62, 546, 706
TspGWI	ACGGA	4 cut(s)	45, 87, 373, 1065
TspRI	CASTG	4 cut(s)	199, 365, 397, 421
Van91I	CCANNNNNTGG	2 cut(s)	628, 703
VspI	ATTAAT	1 cut(s)	468
XmiI	GTMKAC	1 cut(s)	966
XspI	CTAG	2 cut(s)	12, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.