Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005233

Physical Location & Seq

Genomic Coordinates Reverse (-)

51740265 .. 51743688

Gene Structure 3424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0405200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGATTAAGCTTCCGATTCGGAGAATGACGGAAATGGAGAGCGCCGGAGAGTATCATATCGGCCCCGACGAGTCGTACCGGTCTCTGCCGTCGGTTTACTTGGCCTTCTTGACAATCTGGTTCATCTCCGCCTGCTCCTGGACCTTCAACACCTACAAAAACCGACACCTCCAGTCGAATAATTTGCAGTGGACGCTCACATCTGTACCATTAATTAAAGCCTTGCAACTCACATTGTCTTTCCTCTTCTGGTATTCATGCTTTCATCTACAGATATGCTCTCTGTGGATGTCATTTGGGGTGTATGTAACTGGAGTGATATTTCAAACAGCTTCTTTTGTGTCCTTTTTACTCATATCTCATGGTTACTGCATCATGTGCGAGCGTCTTTCAGTGACTGAGCGGCGTACTACTGCTTCCCTTGGCTGTGTGTTTTACTTGACTCTAGTTGGATACAGAGCTTCTGTACCTTATTTTTCTGTCCTGCTGCTGCTTAACTATTTTATCTCATTCTACGTGATATTCCACCATATATCTCAAAATCTGTTAGTGTTGCGGGAACAGTTAAGTTTCATAGATAATGAGGATGTGCATGCAATGCATGATGCAGTCTATACAAAGTACATCATGTTCAAAAAATTCCAAGGTGCAATGCAGATAGTAGCCATGGCAGAGACTGTGATATATATTAACATGGATGACTCATCAGAAAATTACTGGATTCGATTATTAGTTCGAGAGTGGGCACAGTTCTGCATCTTTGTTTACATAGGGTGGACTTTTAGGTCAAGGGACTTGGCACCACGTTTTTCAGTTATGCCAACTTTGAAATCTAAAGGGGAACTAGCAGTCGCTCCCATTTATAGCATTGAAATGGATGCAGAAACGTTCAGAGATTTTACTCGGCATGAATGGCACATTGGTGTGCCAACTGTAAAATCTTCTGATGAGAGCTCAAAGGATTCTGTCTTGGTAATAATTCAGCATCCTCGTGCATTTAGGCTGACCGAAGCTGGAGCTGGAAAATCTTCTCAAAGCCAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

348

Amino Acids

40.33

Weight (kDa)

7.65

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02310 AT1G02310
fragaria_vesca	FvH4_6g08680 FvH4_6g36270 FvH4_6g36270
malus_domestica	MD09G1170400.v1.1 MD17G1156500.v1.1
prunus_persica	Prupe.3G028800_v2.0.a1
pyrus_communis	pycom09g08810
rosa_chinensis	RchiOBHm_Chr2g0148271 RchiOBHm_Chr5g0067931
rosa_laevigata	RLG00000020331 RLG00000035944
rosa_multiflora	Rmu_sc0003937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012680 Rroxscaffold_1G00013380 Rroxscaffold_2G00098950
rosa_rugosa	Rorug02G0405200 Rorug05G0386300
rosa_samantha	Rh2AG463800 Rh2BG476900 Rh2CG450600 Rh2DG485600 Rh5AG445500 Rh5BG462900 Rh5CG484800 Rh5DG476900
rosa_wichuraiana	Rw2G037810 Rw5G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	784
AccB1I	GGYRCC	1 cut(s)	799
AccBSI	CCGCTC	1 cut(s)	403
AciI	CCGC	3 cut(s)	129, 403, 556
AclI	AACGTT	1 cut(s)	887
AcsI	RAATTY	1 cut(s)	638
AfaI	GTAC	5 cut(s)	77, 207, 409, 468, 623
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgeI	ACCGGT	1 cut(s)	78
AgsI	TTSAA	5 cut(s)	148, 326, 634, 829, 872
AjnI	CCWGG	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	903, 935
AleI	CACNNNNGTG	1 cut(s)	921
AluBI	AGCT	7 cut(s)	10, 332, 461, 954, 1013, 1019, 1043
AluI	AGCT	7 cut(s)	10, 332, 461, 954, 1013, 1019, 1043
Alw21I	GWGCWC	1 cut(s)	956
Alw26I	GTCTC	2 cut(s)	87, 668
AlwNI	CAGNNNCTG	2 cut(s)	398, 677
AoxI	GGCC	2 cut(s)	61, 102
ApeKI	GCWGC	2 cut(s)	487, 490
ApoI	RAATTY	1 cut(s)	638
AseI	ATTAAT	1 cut(s)	212
AsiGI	ACCGGT	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	1027
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	62, 141
AvaII	GGWCC	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	748
BaeI	ACNNNNGTAYC	2 cut(s)	189, 222
BanI	GGYRCC	1 cut(s)	799
BanII	GRGCYC	1 cut(s)	956
BarI	GAAGNNNNNNTAC	2 cut(s)	400, 432
BauI	CACGAG	1 cut(s)	990
Bbv12I	GWGCWC	1 cut(s)	956
BbvI	GCAGC	2 cut(s)	474, 477
BceAI	ACGGC	1 cut(s)	73
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	1 cut(s)	139
BciVI	GTATCC	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	87, 668
BfaI	CTAG	2 cut(s)	446, 845
BfmI	CTRYAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	446
BisI	GCNGC	3 cut(s)	404, 488, 491
BlsI	GCNGC	3 cut(s)	405, 489, 492
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	62, 141
BmiI	GGNNCC	2 cut(s)	64, 801
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	5 cut(s)	381, 595, 765, 868, 994
BpmI	CTGGAG	3 cut(s)	155, 333, 1035
BsaAI	YACGTR	1 cut(s)	517
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	421, 643, 666
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	3 cut(s)	172, 316, 722
Bse3DI	GCAATG	2 cut(s)	603, 657
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	3 cut(s)	421, 643, 666
BseGI	GGATG	5 cut(s)	294, 592, 703, 883, 985
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	2 cut(s)	603, 657
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	3 cut(s)	172, 316, 722
BseSI	GKGCMC	1 cut(s)	748
BseXI	GCAGC	2 cut(s)	474, 477
BshFI	GGCC	2 cut(s)	63, 104
BshNI	GGYRCC	1 cut(s)	799
BshTI	ACCGGT	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	956
BsiSI	CCGG	2 cut(s)	45, 79
BslFI	GGGAC	1 cut(s)	806
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	2 cut(s)	87, 668
BsmFI	GGGAC	1 cut(s)	806
BsnI	GGCC	2 cut(s)	63, 104
Bso31I	GGTCTC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	748, 956
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	3 cut(s)	129, 403, 556
BspANI	GGCC	2 cut(s)	63, 104
BspCNI	CTCAG	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	64, 801
BspT107I	GGYRCC	1 cut(s)	799
BspTNI	GGTCTC	1 cut(s)	87
BsrBI	CCGCTC	1 cut(s)	403
BsrDI	GCAATG	2 cut(s)	603, 657
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	3 cut(s)	172, 316, 722
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	421, 643, 666
BssSI	CACGAG	1 cut(s)	990
BssT1I	CCWWGG	3 cut(s)	421, 643, 666
Bst2BI	CACGAG	1 cut(s)	990
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	4 cut(s)	564, 679, 750, 934
Bst6I	CTCTTC	1 cut(s)	251
BstAPI	GCANNNNNTGC	2 cut(s)	378, 598
BstBAI	YACGTR	1 cut(s)	517
BstC8I	GCNNGC	3 cut(s)	133, 383, 594
BstDEI	CTNAG	2 cut(s)	399, 1044
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	5 cut(s)	294, 592, 703, 883, 985
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstMAI	GTCTC	2 cut(s)	87, 668
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 378, 598, 913
BstNI	CCWGG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	748
BstV1I	GCAGC	2 cut(s)	474, 477
BsuI	GTATCC	1 cut(s)	446
BsuRI	GGCC	2 cut(s)	63, 104
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	5 cut(s)	294, 592, 703, 883, 985
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	194, 399
Cac8I	GCNNGC	3 cut(s)	133, 383, 594
CaiI	CAGNNNCTG	2 cut(s)	398, 677
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	62, 141
CseI	GACGC	2 cut(s)	202, 374
Csp6I	GTAC	5 cut(s)	76, 206, 408, 467, 622
CspAI	ACCGGT	1 cut(s)	78
CviAII	CATG	9 cut(s)	258, 362, 376, 593, 602, 628, 667, 694, 908
CviQI	GTAC	5 cut(s)	76, 206, 408, 467, 622
DdeI	CTNAG	2 cut(s)	399, 1044
DrdI	GACNNNNNNGTC	1 cut(s)	784
DseDI	GACNNNNNNGTC	1 cut(s)	784
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EciI	GGCGGA	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	954
Eco130I	CCWWGG	3 cut(s)	421, 643, 666
Eco24I	GRGCYC	1 cut(s)	956
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	954
EcoICRI	GAGCTC	1 cut(s)	954
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	3 cut(s)	421, 643, 666
EcoT22I	ATGCAT	1 cut(s)	603
EcoT38I	GRGCYC	1 cut(s)	956
ErhI	CCWWGG	3 cut(s)	421, 643, 666
FaeI	CATG	9 cut(s)	261, 365, 379, 596, 605, 631, 670, 697, 911
FalI	AAGNNNNNCTT	1 cut(s)	1027
FaqI	GGGAC	1 cut(s)	806
FatI	CATG	9 cut(s)	257, 361, 375, 592, 601, 627, 666, 693, 907
FauI	CCCGC	1 cut(s)	549
Fnu4HI	GCNGC	3 cut(s)	404, 488, 491
FokI	GGATG	5 cut(s)	301, 599, 710, 890, 972
FriOI	GRGCYC	1 cut(s)	956
Fsp4HI	GCNGC	3 cut(s)	404, 488, 491
FspBI	CTAG	2 cut(s)	446, 845
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	3 cut(s)	404, 488, 491
GsuI	CTGGAG	3 cut(s)	155, 333, 1035
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	63, 104
HapII	CCGG	2 cut(s)	45, 79
HgaI	GACGC	2 cut(s)	202, 374
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	9 cut(s)	261, 365, 379, 596, 605, 631, 670, 697, 911
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HindIII	AAGCTT	2 cut(s)	8, 1041
HinfI	GANTC	6 cut(s)	16, 71, 442, 701, 721, 962
HpaII	CCGG	2 cut(s)	45, 79
Hpy166II	GTNNAC	4 cut(s)	97, 192, 766, 777
Hpy188I	TCNGA	5 cut(s)	15, 21, 709, 893, 946
Hpy188III	TCNNGA	2 cut(s)	109, 737
Hpy8I	GTNNAC	4 cut(s)	97, 192, 766, 777
Hpy99I	CGWCG	2 cut(s)	71, 94
HpyAV	CCTTC	2 cut(s)	115, 154
HpyCH4III	ACNGT	4 cut(s)	564, 679, 750, 934
HpyCH4IV	ACGT	3 cut(s)	516, 805, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 378, 598, 913
HpyF3I	CTNAG	2 cut(s)	399, 1044
HpySE526I	ACGT	3 cut(s)	516, 805, 887
Hsp92II	CATG	9 cut(s)	261, 365, 379, 596, 605, 631, 670, 697, 911
HspAI	GCGC	1 cut(s)	42
LmnI	GCTCC	3 cut(s)	140, 859, 1016
Lsp1109I	GCAGC	2 cut(s)	474, 477
LweI	GCATC	5 cut(s)	381, 595, 765, 868, 994
MaeI	CTAG	2 cut(s)	446, 845
MaeII	ACGT	3 cut(s)	516, 805, 887
MaeIII	GTNAC	3 cut(s)	307, 365, 394
MbiI	CCGCTC	1 cut(s)	403
MboII	GAAGA	3 cut(s)	238, 933, 1020
MhlI	GDGCHC	2 cut(s)	748, 956
MluCI	AATT	5 cut(s)	181, 213, 638, 712, 978
MlyI	GAGTC	3 cut(s)	80, 436, 695
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	4 cut(s)	179, 254, 577, 999
Mph1103I	ATGCAT	1 cut(s)	603
MroXI	GAANNNNTTC	1 cut(s)	1027
MseI	TTAA	6 cut(s)	6, 212, 216, 495, 566, 690
MslI	CAYNNNNRTG	4 cut(s)	872, 921, 923, 990
MspI	CCGG	2 cut(s)	45, 79
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	4 cut(s)	193, 378, 598, 913
NcoI	CCATGG	1 cut(s)	666
NlaIII	CATG	9 cut(s)	261, 365, 379, 596, 605, 631, 670, 697, 911
NlaIV	GGNNCC	2 cut(s)	64, 801
NmeAIII	GCCGAG	1 cut(s)	883
NmuCI	GTSAC	1 cut(s)	394
NsiI	ATGCAT	1 cut(s)	603
NspI	RCATGY	1 cut(s)	596
OliI	CACNNNNGTG	1 cut(s)	921
PacI	TTAATTAA	1 cut(s)	216
PaeI	GCATGC	1 cut(s)	596
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	1027
PfeI	GAWTC	3 cut(s)	16, 721, 962
PfoI	TCCNGGA	1 cut(s)	137
PinAI	ACCGGT	1 cut(s)	78
PkrI	GCNGC	3 cut(s)	405, 489, 492
PleI	GAGTC	3 cut(s)	79, 436, 695
PpsI	GAGTC	3 cut(s)	79, 436, 695
Ppu21I	YACGTR	1 cut(s)	517
PshBI	ATTAAT	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	956
Psp1406I	AACGTT	1 cut(s)	887
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	64, 801
PspPI	GGNCC	2 cut(s)	62, 141
PsrI	GAACNNNNNNTAC	2 cut(s)	614, 646
PstNI	CAGNNNCTG	2 cut(s)	398, 677
RsaI	GTAC	5 cut(s)	77, 207, 409, 468, 623
RsaNI	GTAC	5 cut(s)	76, 206, 408, 467, 622
RseI	CAYNNNNRTG	4 cut(s)	872, 921, 923, 990
SacI	GAGCTC	1 cut(s)	956
SaqAI	TTAA	6 cut(s)	6, 212, 216, 495, 566, 690
SatI	GCNGC	3 cut(s)	404, 488, 491
Sau96I	GGNCC	2 cut(s)	62, 141
SchI	GAGTC	3 cut(s)	80, 436, 695
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	2 cut(s)	748, 956
SfaNI	GCATC	5 cut(s)	381, 595, 765, 868, 994
SfcI	CTRYAG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	4 cut(s)	872, 921, 923, 990
SphI	GCATGC	1 cut(s)	596
Sse9I	AATT	5 cut(s)	181, 213, 638, 712, 978
SsiI	CCGC	3 cut(s)	129, 403, 556
SspMI	CTAG	2 cut(s)	446, 845
SstI	GAGCTC	1 cut(s)	956
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	3 cut(s)	421, 643, 666
TaaI	ACNGT	4 cut(s)	564, 679, 750, 934
TaiI	ACGT	3 cut(s)	519, 808, 890
TaqI	TCGA	3 cut(s)	176, 724, 736
TaqII	GACCGA	1 cut(s)	1022
TasI	AATT	5 cut(s)	181, 213, 638, 712, 978
TatI	WGTACW	1 cut(s)	621
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	3 cut(s)	16, 721, 962
Tru1I	TTAA	6 cut(s)	6, 212, 216, 495, 566, 690
Tru9I	TTAA	6 cut(s)	6, 212, 216, 495, 566, 690
TscAI	CASTG	2 cut(s)	194, 399
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	2 cut(s)	487, 490
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	5 cut(s)	112, 246, 254, 562, 924
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	2 cut(s)	194, 399
VpaK11BI	GGWCC	1 cut(s)	141
VspI	ATTAAT	1 cut(s)	212
XapI	RAATTY	1 cut(s)	638
XceI	RCATGY	1 cut(s)	596
XmnI	GAANNNNTTC	1 cut(s)	1027
XspI	CTAG	2 cut(s)	446, 845
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.