Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005233

Physical Location & Seq

Genomic Coordinates Forward (+)

73903105 .. 73903772

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035944

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTGCACACTTAAAATCCATTGATGGCAACCATTTACTGGAGATAGGACTTGAAGGATTTTATGGGGCAACGACGCCGGAGAAGCAGCAATATAATCCCAATAACCAAGAGTTGGGCTCTGATTTCATAGCAACCAACTTGCTTCCACAAGTGGATTTTGCCACTATACATATCTACGCCGAGCAATGGTTATCCGGACAGAGCGAAGAGGCTCAAGCTGCTTTCGTGGATAAATGGGTGCAAGCACACATTGACGATTGTAATACAATAGTGAAGAAACCACTTACTATGGCGGAGTTCGGCAAGTTGTGGAAATATCCAGGGTACTCCATAGAAAACAGAAACGCCTACTTTGGAAAGTTATACGACGCCGTATACAGCAGCGCCAAAAGTGGGGGAGCGTGTGTTGGTGGACTTTTCTGGCAGCTGTTTGCTCAAGGTATGGAAAACTTCGGGGACGGATACCAAGTCGTTTTAGAGGAGAGTCCGTCCACTGCTGATGTCATTGCCCAGCAGTCTCAAAGGCTCCAGTCGCTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

182

Amino Acids

20.07

Weight (kDa)

4.68

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	2 - 143	1e-07	GH family 5 beta-mannosidase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02310 AT1G02310
fragaria_vesca	FvH4_6g08680 FvH4_6g36270 FvH4_6g36270
malus_domestica	MD09G1170400.v1.1 MD17G1156500.v1.1
prunus_persica	Prupe.3G028800_v2.0.a1
pyrus_communis	pycom09g08810
rosa_chinensis	RchiOBHm_Chr2g0148271 RchiOBHm_Chr5g0067931
rosa_laevigata	RLG00000020331 RLG00000035944
rosa_multiflora	Rmu_sc0003937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012680 Rroxscaffold_1G00013380 Rroxscaffold_2G00098950
rosa_rugosa	Rorug02G0405200 Rorug05G0386300
rosa_samantha	Rh2AG463800 Rh2BG476900 Rh2CG450600 Rh2DG485600 Rh5AG445500 Rh5BG462900 Rh5CG484800 Rh5DG476900
rosa_wichuraiana	Rw2G037810 Rw5G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	40, 115
AccI	GTMKAC	1 cut(s)	378
AccIII	TCCGGA	1 cut(s)	197
AciI	CCGC	1 cut(s)	296
AcyI	GRCGYC	2 cut(s)	77, 372
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	4 cut(s)	40, 115, 189, 396
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	2 cut(s)	221, 430
AluI	AGCT	2 cut(s)	221, 430
Alw26I	GTCTC	1 cut(s)	525
Aor13HI	TCCGGA	1 cut(s)	197
ApeKI	GCWGC	5 cut(s)	5, 88, 221, 384, 427
AspLEI	GCGC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	122
BbvI	GCAGC	4 cut(s)	100, 208, 396, 439
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	324
BciVI	GTATCC	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	525
BfoI	RGCGCY	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	458
BisI	GCNGC	5 cut(s)	6, 89, 222, 385, 428
BlsI	GCNGC	5 cut(s)	7, 90, 223, 386, 429
Bme1390I	CCNGG	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	530
BmrFI	CCNGG	1 cut(s)	324
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	2 cut(s)	62, 515
BpuEI	CTTGAG	2 cut(s)	201, 423
BsaHI	GRCGYC	2 cut(s)	77, 372
BsaJI	CCNNGG	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	4 cut(s)	393, 423, 476, 506
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 115, 189, 396
Bse1I	ACTGG	2 cut(s)	45, 532
Bse3DI	GCAATG	2 cut(s)	194, 507
BseAI	TCCGGA	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	323
BseLI	CCNNNNNNNGG	4 cut(s)	40, 115, 189, 396
BseMI	GCAATG	2 cut(s)	194, 507
BseNI	ACTGG	2 cut(s)	45, 532
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	4 cut(s)	100, 208, 396, 439
BseYI	CCCAGC	1 cut(s)	513
BsiSI	CCGG	2 cut(s)	80, 198
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	4 cut(s)	40, 115, 189, 396
BsmAI	GTCTC	1 cut(s)	525
BsmFI	GGGAC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp13I	TCCGGA	1 cut(s)	197
BspACI	CCGC	1 cut(s)	296
BspEI	TCCGGA	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	530
BsrDI	GCAATG	2 cut(s)	194, 507
BsrI	ACTGG	2 cut(s)	45, 532
BssECI	CCNNGG	1 cut(s)	323
BssNAI	GTATAC	1 cut(s)	379
BssNI	GRCGYC	2 cut(s)	77, 372
Bst1107I	GTATAC	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	204
BstACI	GRCGYC	2 cut(s)	77, 372
BstC8I	GCNNGC	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	389
BstMAI	GTCTC	1 cut(s)	525
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 221, 535
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	322
BstV1I	GCAGC	4 cut(s)	100, 208, 396, 439
BstZ17I	GTATAC	1 cut(s)	379
BsuI	GTATCC	1 cut(s)	458
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	1 cut(s)	389
CseI	GACGC	2 cut(s)	85, 380
Csp6I	GTAC	1 cut(s)	328
CviJI	RGCY	6 cut(s)	5, 120, 215, 221, 430, 529
CviKI_1	RGCY	6 cut(s)	5, 120, 215, 221, 430, 529
CviQI	GTAC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	122
FaqI	GGGAC	1 cut(s)	473
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	5 cut(s)	6, 89, 222, 385, 428
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	5 cut(s)	6, 89, 222, 385, 428
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	5 cut(s)	6, 89, 222, 385, 428
GsaI	CCCAGC	1 cut(s)	517
GsuI	CTGGAG	2 cut(s)	62, 515
HaeII	RGCGCY	1 cut(s)	390
HapII	CCGG	2 cut(s)	80, 198
HgaI	GACGC	2 cut(s)	85, 380
HhaI	GCGC	1 cut(s)	389
Hin1I	GRCGYC	2 cut(s)	77, 372
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HinfI	GANTC	1 cut(s)	487
HpaII	CCGG	2 cut(s)	80, 198
Hpy166II	GTNNAC	3 cut(s)	379, 416, 495
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	3 cut(s)	379, 416, 495
Hpy99I	CGWCG	2 cut(s)	79, 374
HpyAV	CCTTC	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	8, 244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 221, 535
Hsp92I	GRCGYC	2 cut(s)	77, 372
HspAI	GCGC	1 cut(s)	387
Kpn2I	TCCGGA	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	401, 534
LpnPI	CCDG	7 cut(s)	26, 93, 211, 309, 336, 409, 527
Lsp1109I	GCAGC	4 cut(s)	100, 208, 396, 439
MboII	GAAGA	2 cut(s)	221, 289
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	1 cut(s)	541
MlyI	GAGTC	1 cut(s)	496
MnlI	CCTC	2 cut(s)	205, 475
MroI	TCCGGA	1 cut(s)	197
MseI	TTAA	2 cut(s)	14, 544
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	2 cut(s)	80, 198
MspR9I	CCNGG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	85, 221, 535
NlaIV	GGNNCC	1 cut(s)	530
NmeAIII	GCCGAG	1 cut(s)	208
PflMI	CCANNNNNTGG	2 cut(s)	40, 115
PkrI	GCNGC	5 cut(s)	7, 90, 223, 386, 429
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	530
PvuII	CAGCTG	1 cut(s)	430
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	14, 544
SatI	GCNGC	5 cut(s)	6, 89, 222, 385, 428
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	3 cut(s)	223, 432, 445
SmlI	CTYRAG	2 cut(s)	216, 438
SmoI	CTYRAG	2 cut(s)	216, 438
Sse9I	AATT	1 cut(s)	541
SsiI	CCGC	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	322
TasI	AATT	1 cut(s)	541
Tru1I	TTAA	2 cut(s)	14, 544
Tru9I	TTAA	2 cut(s)	14, 544
TscAI	CASTG	1 cut(s)	502
TseI	GCWGC	5 cut(s)	5, 88, 221, 384, 427
TspDTI	ATGAA	1 cut(s)	118
TspGWI	ACGGA	2 cut(s)	477, 480
TspRI	CASTG	1 cut(s)	502
Van91I	CCANNNNNTGG	2 cut(s)	40, 115
XmiI	GTMKAC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.