Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005233

Physical Location & Seq

Genomic Coordinates Reverse (-)

15036976 .. 15037870

Gene Structure 895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1156500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCAGACTCTACTCACAAGAAAAAATTCCATAACAAAGGTGGCTTACAAAAATGATCCAACCATCTTCGCGTGGGAACTAATGAATGAGCCTCGTTGCCAATCTGATGTATCTGGATCAATTCTTCAGCCATGGGTGAAAGAAATGGCTGCACACTCTAAGTACATAGATAGTAAGCATTTACTAGAGATAGGGCTTGAAGGATTTTATGGCAAAACAACGCCGGACAAGAAGCAGTTCAATCCTGGTAACCTAGAATATGGTTCTGAATTCATTGCCAGCAACTTGCTTCCCGACAGCGATTTCGCCACTATACATATCTATGCTGAGCAATGGTTACCAGAGACAAGCGAAGAGGGCCAAGCCGGTTTTGTGGACAAATGGGTGCAACAACACATCGAAGACTGCAACACAGTAGTTAAGAAACCACTGGTTTTGGGAGAGTTTGGCAAGTCTTATAGGTTACCAGGTTACACCCCAGGAAAGAGGAATGCCTACTTTCGCAAACTATACGAGTACATCTACACAAGTGCGAGTAGTGGGGGTTCTCTTGTAGGTGGGATTTTCTGGCAGCTGATTGCACAGGGAATGGACACCTTCGGAGATGGATACGAAGTCGTTTTGGAGGAGAGCCCTACTACTGCCAATGTCATTGCATACCAGTCTAGCAAGCTTGGTAGGTTAAATTACGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

232

Amino Acids

26.02

Weight (kDa)

5.32

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	2 - 191	1.1e-23	GH family 5 beta-mannosidase-like
Cellulase	PF00150	15 - 154	1.3e-06	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02310 AT1G02310
fragaria_vesca	FvH4_6g08680 FvH4_6g36270 FvH4_6g36270
malus_domestica	MD09G1170400.v1.1 MD17G1156500.v1.1
prunus_persica	Prupe.3G028800_v2.0.a1
pyrus_communis	pycom09g08810
rosa_chinensis	RchiOBHm_Chr2g0148271 RchiOBHm_Chr5g0067931
rosa_laevigata	RLG00000020331 RLG00000035944
rosa_multiflora	Rmu_sc0003937.1_g000001
rosa_roxburghii	Rroxscaffold_1G00012680 Rroxscaffold_1G00013380 Rroxscaffold_2G00098950
rosa_rugosa	Rorug02G0405200 Rorug05G0386300
rosa_samantha	Rh2AG463800 Rh2BG476900 Rh2CG450600 Rh2DG485600 Rh5AG445500 Rh5BG462900 Rh5CG484800 Rh5DG476900
rosa_wichuraiana	Rw2G037810 Rw5G041600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	71
AclWI	GGATC	2 cut(s)	50, 124
AcsI	RAATTY	2 cut(s)	25, 269
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	2 cut(s)	164, 518
AgsI	TTSAA	2 cut(s)	200, 241
AjnI	CCWGG	3 cut(s)	244, 466, 478
AluBI	AGCT	2 cut(s)	574, 673
AluI	AGCT	2 cut(s)	574, 673
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	50, 124
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	2 cut(s)	149, 571
ApoI	RAATTY	2 cut(s)	25, 269
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
Asp700I	GAANNNNTTC	2 cut(s)	25, 236
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	635
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	136, 583
BccI	CCATC	2 cut(s)	71, 599
BciT130I	CCWGG	3 cut(s)	246, 468, 480
BciVI	GTATCC	1 cut(s)	602
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	4 cut(s)	185, 254, 666, 694
BfuI	GTATCC	1 cut(s)	602
BisI	GCNGC	2 cut(s)	150, 572
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	2 cut(s)	151, 573
Bme1390I	CCNGG	3 cut(s)	246, 468, 480
BmgT120I	GGNCC	1 cut(s)	358
BmrFI	CCNGG	3 cut(s)	246, 468, 480
BpiI	GAAGAC	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	131, 478
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	435, 661
Bse3DI	GCAATG	3 cut(s)	273, 338, 651
BseBI	CCWGG	3 cut(s)	246, 468, 480
BseDI	CCNNGG	2 cut(s)	131, 478
BseMI	GCAATG	3 cut(s)	273, 338, 651
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	435, 661
BseRI	GAGGAG	1 cut(s)	641
BseXI	GCAGC	2 cut(s)	136, 583
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	224, 366
BsmAI	GTCTC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	635
Bsp143I	GATC	2 cut(s)	55, 116
Bsp1720I	GCTNAGC	1 cut(s)	327
Bsp19I	CCATGG	1 cut(s)	131
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	71
BspPI	GGATC	2 cut(s)	50, 124
BsrDI	GCAATG	3 cut(s)	273, 338, 651
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	435, 661
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	131, 478
BssMI	GATC	2 cut(s)	55, 116
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	3 cut(s)	246, 468, 480
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	280, 671
BstDEI	CTNAG	2 cut(s)	159, 327
BstDSI	CCRYGG	1 cut(s)	131
BstEII	GGTNACC	3 cut(s)	248, 336, 462
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	2 cut(s)	58, 119
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	2 cut(s)	55, 116
BstMWI	GCNNNNNNNGC	1 cut(s)	357
BstNI	CCWGG	3 cut(s)	246, 468, 480
BstPI	GGTNACC	3 cut(s)	248, 336, 462
BstSCI	CCNGG	3 cut(s)	244, 466, 478
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	136, 583
BstV2I	GAAGAC	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	602
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	2 cut(s)	280, 671
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	358
CsiI	ACCWGGT	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	163, 517
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	1 cut(s)	132
CviQI	GTAC	2 cut(s)	163, 517
DdeI	CTNAG	2 cut(s)	159, 327
DpnI	GATC	2 cut(s)	57, 118
DpnII	GATC	2 cut(s)	55, 116
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	110
Eco91I	GGTNACC	3 cut(s)	248, 336, 462
EcoO65I	GGTNACC	3 cut(s)	248, 336, 462
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	3 cut(s)	244, 466, 478
EcoT14I	CCWWGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	635
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	1 cut(s)	135
FatI	CATG	1 cut(s)	131
Fnu4HI	GCNGC	2 cut(s)	150, 572
FriOI	GRGCYC	1 cut(s)	635
Fsp4HI	GCNGC	2 cut(s)	150, 572
FspBI	CTAG	4 cut(s)	185, 254, 666, 694
GluI	GCNGC	2 cut(s)	150, 572
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	2 cut(s)	224, 366
Hin1II	CATG	1 cut(s)	135
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	2 cut(s)	224, 366
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	106, 268, 602
Hpy188III	TCNNGA	2 cut(s)	114, 293
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	194, 607
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	6 cut(s)	4, 152, 388, 408, 581, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	357
HpyF3I	CTNAG	2 cut(s)	159, 327
Hsp92II	CATG	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	55, 116
Lsp1109I	GCAGC	2 cut(s)	136, 583
MabI	ACCWGGT	1 cut(s)	466
MaeI	CTAG	4 cut(s)	185, 254, 666, 694
MaeIII	GTNAC	4 cut(s)	248, 336, 462, 470
MalI	GATC	2 cut(s)	57, 118
MboI	GATC	2 cut(s)	55, 116
MboII	GAAGA	4 cut(s)	58, 116, 365, 413
MhlI	GDGCHC	1 cut(s)	635
MluCI	AATT	4 cut(s)	25, 120, 269, 685
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	4 cut(s)	102, 349, 480, 619
MroXI	GAANNNNTTC	2 cut(s)	25, 236
MseI	TTAA	2 cut(s)	420, 683
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	574
MspI	CCGG	2 cut(s)	224, 366
MspR9I	CCNGG	3 cut(s)	246, 468, 480
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	3 cut(s)	246, 468, 480
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	357
NcoI	CCATGG	1 cut(s)	131
NdeII	GATC	2 cut(s)	55, 116
NlaIII	CATG	1 cut(s)	135
PctI	GAATGC	1 cut(s)	496
PdmI	GAANNNNTTC	2 cut(s)	25, 236
PkrI	GCNGC	2 cut(s)	151, 573
Psp6I	CCWGG	3 cut(s)	244, 466, 478
PspEI	GGTNACC	3 cut(s)	248, 336, 462
PspGI	CCWGG	3 cut(s)	244, 466, 478
PspPI	GGNCC	1 cut(s)	358
PsrI	GAACNNNNNNTAC	2 cut(s)	529, 561
PvuII	CAGCTG	1 cut(s)	574
RsaI	GTAC	2 cut(s)	164, 518
RsaNI	GTAC	2 cut(s)	163, 517
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	420, 683
SatI	GCNGC	2 cut(s)	150, 572
Sau3AI	GATC	2 cut(s)	55, 116
Sau96I	GGNCC	1 cut(s)	358
ScrFI	CCNGG	3 cut(s)	246, 468, 480
SduI	GDGCHC	1 cut(s)	635
SetI	ASST	9 cut(s)	42, 255, 464, 472, 559, 576, 599, 675, 683
SexAI	ACCWGGT	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	4 cut(s)	25, 120, 269, 685
SspMI	CTAG	4 cut(s)	185, 254, 666, 694
StyD4I	CCNGG	3 cut(s)	244, 466, 478
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	1 cut(s)	399
TasI	AATT	4 cut(s)	25, 120, 269, 685
TatI	WGTACW	2 cut(s)	162, 516
Tru1I	TTAA	2 cut(s)	420, 683
Tru9I	TTAA	2 cut(s)	420, 683
TscAI	CASTG	1 cut(s)	435
TseI	GCWGC	2 cut(s)	149, 571
TspDTI	ATGAA	2 cut(s)	98, 262
TspRI	CASTG	1 cut(s)	435
XapI	RAATTY	2 cut(s)	25, 269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XmnI	GAANNNNTTC	2 cut(s)	25, 236
XspI	CTAG	4 cut(s)	185, 254, 666, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.