FvH4_6g08680

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
5172250 .. 5173944
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08680.t1

Sequence Viewer

Length: 1146 bp
ATGTTTCAAAAGGGTTCTTATGTATTGTTAGTTTTACTCTTTTTCTTGTGTTGTTTAAACCCAGCAGCACAAGCTGGCTCTAGTTTTGGTGGAACAACAGGAACCCGGTTTGTCATGAATGGGAAACCATTTTACATGAACGGCTTCAATGCGTATTGGATGATGTACATGGCATCTGATCCCTCTACGCAGCTCATGGTCACTTCTGCATTCCAACAAGCCTCCAAGTATAAGATGAATGTTGCAAGAACTTGGGGTTTCAGTGATGGCGGCGACAGACCCCTTCAAATATCACCTGGTTCCTATAACGAAAACATGTTCAAGCTTAGTGAACAACTACGAAGCTTTTGGGGGAGAAAGCAGTATGTGCAGTGGGCAAGGGAGCAGGGTCAATCCCTCAGCAGTGATGACGACTTCTACAGCAACGTAGTTGTCAAAGGCTTCTACAAGAACCATGTCAAGGCTATTCTCACAAGAATGAATACAATAACAAACGTTGCATACAAAGATGATCCAACCATTTTCGCATGGGAGCTGATCAATGAACCCCGATGCCAATCTGACGTCTCTGGAGCTCTTCTTCAGCAATGGGTGAACGAAATGGCTGCATACTTAAAATCCATTGATGGCAACCACTTACTCGAGGTAGGACTCGAAGGATTTTACGGGGCAACGACGCCGGAGAAGAAGCAGTACAATCCCGGTAACCAAGACTGGGGCTCTGATTTCATAGCAACCAACTTGCTTCCTCAGATCGATTTTGCCACTATACATATCTACGCAGAACAATGGTTATCTGGACAGAGCGAAGAGGCTCAAGCTGCTTTCGTGGACAAATGGGTGCAAGTACACATTGATGATTGTAATACAATAGTGAAGAAACCACTGATCATGGGGGAGTTTGGCAAGTCTTCGAAATATCCAGGGTACTCCATAGAAAACAGAAACTCCTACTTTGGGAAGTTATACGACGATGTATACAACAGTGCAAAAAGTGGAGGTTCCTGTGTAGGTGGTCTTTTTTGGCAGCTGCTTGCGCAAGGTATGGCAACGTATGGGGACGGATACGAAGTCGTTTTAGAGGAGAGTCAGTCGACTGGAGATGTCATTGCCCAACAGTCTCAAAGGCTCCAGTTGCTAAATTAA

Protein Analysis

382

Amino Acids

42.83

Weight (kDa)

5.24

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH5_mannosidase PF26410 136 - 344 4.5e-33 GH family 5 beta-mannosidase-like
Cellulase PF00150 163 - 307 1.6e-08 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 567
Acc16I TGCGCA 1 cut(s) 1038
AccI GTMKAC 2 cut(s) 978, 1094
AciI CCGC 1 cut(s) 270
AclI AACGTT 1 cut(s) 495
AclWI GGATC 2 cut(s) 173, 506
AcuI CTGAAG 1 cut(s) 566
AcyI GRCGYC 2 cut(s) 564, 677
AfaI GTAC 4 cut(s) 167, 695, 849, 929
AfiI CCNNNNNNNGG 3 cut(s) 460, 715, 957
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 4 cut(s) 8, 148, 287, 322
AjnI CCWGG 2 cut(s) 295, 922
AluBI AGCT 8 cut(s) 74, 193, 325, 345, 535, 575, 821, 1030
AluI AGCT 8 cut(s) 74, 193, 325, 345, 535, 575, 821, 1030
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 2 cut(s) 571, 1125
AlwI GGATC 2 cut(s) 173, 506
Ama87I CYCGRG 1 cut(s) 641
ApeKI GCWGC 6 cut(s) 65, 190, 605, 821, 1027, 1030
Asp700I GAANNNNTTC 1 cut(s) 143
AspLEI GCGC 1 cut(s) 1039
AsuC2I CCSGG 2 cut(s) 106, 702
AsuHPI GGTGA 2 cut(s) 285, 604
AsuII TTCGAA 1 cut(s) 914
AvaI CYCGRG 1 cut(s) 641
BanII GRGCYC 2 cut(s) 577, 722
BarI GAAGNNNNNNTAC 2 cut(s) 677, 709
BbsI GAAGAC 1 cut(s) 903
Bbv12I GWGCWC 1 cut(s) 577
BbvCI CCTCAGC 1 cut(s) 398
BbvI GCAGC 6 cut(s) 77, 202, 592, 808, 1017, 1039
BccI CCATC 2 cut(s) 260, 620
BceAI ACGGC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 2 cut(s) 297, 924
BciVI GTATCC 1 cut(s) 1058
BclI TGATCA 2 cut(s) 537, 888
BcnI CCSGG 2 cut(s) 106, 702
BcoDI GTCTC 2 cut(s) 571, 1125
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 418
BfuI GTATCC 1 cut(s) 1058
BisI GCNGC 7 cut(s) 66, 191, 271, 606, 822, 1028, 1031
BlsI GCNGC 7 cut(s) 67, 192, 272, 607, 823, 1029, 1032
Bme1390I CCNGG 4 cut(s) 106, 297, 702, 924
BmeT110I CYCGRG 1 cut(s) 641
BmiI GGNNCC 4 cut(s) 103, 301, 1003, 1130
BmrFI CCNGG 4 cut(s) 106, 297, 702, 924
BmrI ACTGGG 1 cut(s) 724
BmsI GCATC 2 cut(s) 182, 542
BmuI ACTGGG 1 cut(s) 724
BpiI GAAGAC 1 cut(s) 903
BpmI CTGGAG 3 cut(s) 591, 1115, 1119
Bpu10I CCTNAGC 1 cut(s) 398
Bpu14I TTCGAA 1 cut(s) 914
BpuEI CTTGAG 1 cut(s) 801
BpuMI CCSGG 2 cut(s) 106, 702
Bsa29I ATCGAT 1 cut(s) 756
BsaBI GATNNNNATC 1 cut(s) 556
BsaHI GRCGYC 2 cut(s) 564, 677
BsaJI CCNNGG 1 cut(s) 923
BsaXI ACNNNNNCTCC 4 cut(s) 932, 962, 1076, 1106
Bsc4I CCNNNNNNNGG 3 cut(s) 460, 715, 957
Bse1I ACTGG 3 cut(s) 719, 1102, 1132
Bse3DI GCAATG 2 cut(s) 593, 1107
Bse8I GATNNNNATC 1 cut(s) 556
BseBI CCWGG 2 cut(s) 297, 924
BseCI ATCGAT 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 923
BseGI GGATG 1 cut(s) 165
BseJI GATNNNNATC 1 cut(s) 556
BseLI CCNNNNNNNGG 3 cut(s) 460, 715, 957
BseMI GCAATG 2 cut(s) 593, 1107
BseMII CTCAG 2 cut(s) 412, 764
BseNI ACTGG 3 cut(s) 719, 1102, 1132
BseRI GAGGAG 1 cut(s) 1097
BseXI GCAGC 6 cut(s) 77, 202, 592, 808, 1017, 1039
BseYI CCCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 389
BshVI ATCGAT 1 cut(s) 756
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 641
BsiSI CCGG 3 cut(s) 106, 680, 702
BslFI GGGAC 1 cut(s) 1073
BslI CCNNNNNNNGG 3 cut(s) 460, 715, 957
BsmAI GTCTC 2 cut(s) 571, 1125
BsmBI CGTCTC 1 cut(s) 571
BsmFI GGGAC 1 cut(s) 1073
BsmI GAATGC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 641
Bsp119I TTCGAA 1 cut(s) 914
Bsp1286I GDGCHC 2 cut(s) 577, 722
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 5 cut(s) 178, 511, 537, 753, 888
BspACI CCGC 1 cut(s) 270
BspCNI CTCAG 2 cut(s) 411, 763
BspDI ATCGAT 1 cut(s) 756
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 4 cut(s) 103, 301, 1003, 1130
BspPI GGATC 2 cut(s) 173, 506
BspQI GCTCTTC 1 cut(s) 582
BspT104I TTCGAA 1 cut(s) 914
BsrDI GCAATG 2 cut(s) 593, 1107
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 3 cut(s) 719, 1102, 1132
BssECI CCNNGG 1 cut(s) 923
BssMI GATC 5 cut(s) 178, 511, 537, 753, 888
BssNAI GTATAC 1 cut(s) 979
BssNI GRCGYC 2 cut(s) 564, 677
Bst1107I GTATAC 1 cut(s) 979
Bst2UI CCWGG 2 cut(s) 297, 924
Bst4CI ACNGT 2 cut(s) 986, 1119
Bst6I CTCTTC 2 cut(s) 582, 804
BstACI GRCGYC 2 cut(s) 564, 677
BstAPI GCANNNNNTGC 1 cut(s) 367
BstAUI TGTACA 1 cut(s) 165
BstBI TTCGAA 1 cut(s) 914
BstC8I GCNNGC 2 cut(s) 76, 1035
BstDEI CTNAG 3 cut(s) 326, 398, 750
BstEII GGTNACC 1 cut(s) 704
BstF5I GGATG 1 cut(s) 165
BstHHI GCGC 1 cut(s) 1039
BstKTI GATC 5 cut(s) 181, 514, 540, 756, 891
BstMAI GTCTC 2 cut(s) 571, 1125
BstMBI GATC 5 cut(s) 178, 511, 537, 753, 888
BstMWI GCNNNNNNNGC 5 cut(s) 71, 367, 821, 1036, 1135
BstNI CCWGG 2 cut(s) 297, 924
BstNSI RCATGY 1 cut(s) 319
BstPI GGTNACC 1 cut(s) 704
BstSCI CCNGG 4 cut(s) 104, 295, 700, 922
BstSFI CTRYAG 1 cut(s) 418
BstV1I GCAGC 6 cut(s) 77, 202, 592, 808, 1017, 1039
BstV2I GAAGAC 1 cut(s) 903
BstZ17I GTATAC 1 cut(s) 979
Bsu15I ATCGAT 1 cut(s) 756
BsuI GTATCC 1 cut(s) 1058
BsuTUI ATCGAT 1 cut(s) 756
BtsCI GGATG 1 cut(s) 165
BtsI GCAGTG 2 cut(s) 377, 409
BtsIMutI CAGTG 5 cut(s) 268, 377, 409, 884, 991
Cac8I GCNNGC 2 cut(s) 76, 1035
CciI TCATGA 1 cut(s) 114
CfoI GCGC 1 cut(s) 1039
ClaI ATCGAT 1 cut(s) 756
CseI GACGC 1 cut(s) 685
CsiI ACCWGGT 1 cut(s) 295
Csp6I GTAC 4 cut(s) 166, 694, 848, 928
CviAII CATG 8 cut(s) 115, 136, 169, 196, 316, 455, 528, 892
CviQI GTAC 4 cut(s) 166, 694, 848, 928
DdeI CTNAG 3 cut(s) 326, 398, 750
DpnI GATC 5 cut(s) 180, 513, 539, 755, 890
DpnII GATC 5 cut(s) 178, 511, 537, 753, 888
DraI TTTAAA 1 cut(s) 57
Eam1104I CTCTTC 2 cut(s) 582, 804
EarI CTCTTC 2 cut(s) 582, 804
Ecl136II GAGCTC 1 cut(s) 575
Eco24I GRGCYC 2 cut(s) 577, 722
Eco53kI GAGCTC 1 cut(s) 575
Eco57I CTGAAG 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 641
Eco91I GGTNACC 1 cut(s) 704
EcoICRI GAGCTC 1 cut(s) 575
EcoO65I GGTNACC 1 cut(s) 704
EcoRII CCWGG 2 cut(s) 295, 922
EcoT38I GRGCYC 2 cut(s) 577, 722
Esp3I CGTCTC 1 cut(s) 571
FaeI CATG 8 cut(s) 118, 139, 172, 199, 319, 458, 531, 895
FaqI GGGAC 1 cut(s) 1073
FatI CATG 8 cut(s) 114, 135, 168, 195, 315, 454, 527, 891
FbaI TGATCA 2 cut(s) 537, 888
FblI GTMKAC 2 cut(s) 978, 1094
Fnu4HI GCNGC 7 cut(s) 66, 191, 271, 606, 822, 1028, 1031
FokI GGATG 1 cut(s) 172
FriOI GRGCYC 2 cut(s) 577, 722
Fsp4HI GCNGC 7 cut(s) 66, 191, 271, 606, 822, 1028, 1031
FspBI CTAG 1 cut(s) 81
FspI TGCGCA 1 cut(s) 1038
GlaI GCGC 1 cut(s) 1038
GluI GCNGC 7 cut(s) 66, 191, 271, 606, 822, 1028, 1031
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 3 cut(s) 591, 1115, 1119
HapII CCGG 3 cut(s) 106, 680, 702
HgaI GACGC 1 cut(s) 685
HhaI GCGC 1 cut(s) 1039
Hin1I GRCGYC 2 cut(s) 564, 677
Hin1II CATG 8 cut(s) 118, 139, 172, 199, 319, 458, 531, 895
Hin6I GCGC 1 cut(s) 1037
HinP1I GCGC 1 cut(s) 1037
HincII GTYRAC 1 cut(s) 1095
HindII GTYRAC 1 cut(s) 1095
HindIII AAGCTT 2 cut(s) 323, 343
HinfI GANTC 2 cut(s) 651, 1087
HpaII CCGG 3 cut(s) 106, 680, 702
HphI GGTGA 2 cut(s) 285, 604
Hpy166II GTNNAC 6 cut(s) 332, 595, 832, 850, 979, 1095
Hpy188I TCNGA 4 cut(s) 178, 562, 724, 753
Hpy188III TCNNGA 3 cut(s) 115, 570, 798
Hpy8I GTNNAC 6 cut(s) 332, 595, 832, 850, 979, 1095
Hpy99I CGWCG 2 cut(s) 679, 974
HpyAV CCTTC 2 cut(s) 293, 650
HpyCH4III ACNGT 2 cut(s) 986, 1119
HpyCH4IV ACGT 4 cut(s) 426, 495, 564, 1052
HpyCH4V TGCA 7 cut(s) 209, 245, 370, 500, 608, 844, 989
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 367, 821, 1036, 1135
HpyF3I CTNAG 3 cut(s) 326, 398, 750
HpySE526I ACGT 4 cut(s) 426, 495, 564, 1052
Hsp92I GRCGYC 2 cut(s) 564, 677
Hsp92II CATG 8 cut(s) 118, 139, 172, 199, 319, 458, 531, 895
HspAI GCGC 1 cut(s) 1037
Ksp22I TGATCA 2 cut(s) 537, 888
Kzo9I GATC 5 cut(s) 178, 511, 537, 753, 888
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 4 cut(s) 382, 532, 572, 1134
Lsp1109I GCAGC 6 cut(s) 77, 202, 592, 808, 1017, 1039
LweI GCATC 2 cut(s) 182, 542
MabI ACCWGGT 1 cut(s) 295
MaeI CTAG 1 cut(s) 81
MaeII ACGT 4 cut(s) 426, 495, 564, 1052
MaeIII GTNAC 2 cut(s) 199, 704
MalI GATC 5 cut(s) 180, 513, 539, 755, 890
MboI GATC 5 cut(s) 178, 511, 537, 753, 888
MboII GAAGA 6 cut(s) 569, 572, 697, 821, 889, 903
MhlI GDGCHC 2 cut(s) 577, 722
MluCI AATT 1 cut(s) 1141
MlyI GAGTC 2 cut(s) 645, 1096
MmeI TCCRAC 2 cut(s) 238, 539
MnlI CCTC 8 cut(s) 193, 232, 407, 637, 759, 805, 992, 1075
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 3 cut(s) 56, 614, 1144
MslI CAYNNNNRTG 2 cut(s) 476, 855
MspA1I CMGCKG 1 cut(s) 1030
MspI CCGG 3 cut(s) 106, 680, 702
MspR9I CCNGG 4 cut(s) 106, 297, 702, 924
MssI GTTTAAAC 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 2 cut(s) 297, 924
MwoI GCNNNNNNNGC 5 cut(s) 71, 367, 821, 1036, 1135
NciI CCSGG 2 cut(s) 106, 702
NdeII GATC 5 cut(s) 178, 511, 537, 753, 888
NlaIII CATG 8 cut(s) 118, 139, 172, 199, 319, 458, 531, 895
NlaIV GGNNCC 4 cut(s) 103, 301, 1003, 1130
NmuCI GTSAC 1 cut(s) 199
NsbI TGCGCA 1 cut(s) 1038
NspI RCATGY 1 cut(s) 319
NspV TTCGAA 1 cut(s) 914
PaeR7I CTCGAG 1 cut(s) 641
PagI TCATGA 1 cut(s) 114
PciI ACATGT 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 582
PctI GAATGC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 143
PkrI GCNGC 7 cut(s) 67, 192, 272, 607, 823, 1029, 1032
PleI GAGTC 2 cut(s) 645, 1095
PmeI GTTTAAAC 1 cut(s) 57
PpsI GAGTC 2 cut(s) 645, 1095
PscI ACATGT 1 cut(s) 315
Psp124BI GAGCTC 1 cut(s) 577
Psp1406I AACGTT 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 295, 922
PspEI GGTNACC 1 cut(s) 704
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 2 cut(s) 295, 922
PspN4I GGNNCC 4 cut(s) 103, 301, 1003, 1130
PspXI VCTCGAGB 1 cut(s) 641
PvuII CAGCTG 1 cut(s) 1030
RsaI GTAC 4 cut(s) 167, 695, 849, 929
RsaNI GTAC 4 cut(s) 166, 694, 848, 928
RseI CAYNNNNRTG 2 cut(s) 476, 855
SacI GAGCTC 1 cut(s) 577
SalI GTCGAC 1 cut(s) 1093
SapI GCTCTTC 1 cut(s) 582
SaqAI TTAA 3 cut(s) 56, 614, 1144
SatI GCNGC 7 cut(s) 66, 191, 271, 606, 822, 1028, 1031
Sau3AI GATC 5 cut(s) 178, 511, 537, 753, 888
SchI GAGTC 2 cut(s) 645, 1096
ScrFI CCNGG 4 cut(s) 106, 297, 702, 924
SduI GDGCHC 2 cut(s) 577, 722
SexAI ACCWGGT 1 cut(s) 295
SfaNI GCATC 2 cut(s) 182, 542
SfcI CTRYAG 1 cut(s) 418
Sfr274I CTCGAG 1 cut(s) 641
SfuI TTCGAA 1 cut(s) 914
SlaI CTCGAG 1 cut(s) 641
SmiMI CAYNNNNRTG 2 cut(s) 476, 855
SmlI CTYRAG 2 cut(s) 641, 816
SmoI CTYRAG 2 cut(s) 641, 816
Sse9I AATT 1 cut(s) 1141
SsiI CCGC 1 cut(s) 270
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 1 cut(s) 577
StyD4I CCNGG 4 cut(s) 104, 295, 700, 922
TaaI ACNGT 2 cut(s) 986, 1119
TaiI ACGT 4 cut(s) 429, 498, 567, 1055
TaqI TCGA 5 cut(s) 642, 654, 756, 914, 1094
TasI AATT 1 cut(s) 1141
TatI WGTACW 3 cut(s) 165, 693, 847
TauI GCSGC 1 cut(s) 273
Tru1I TTAA 3 cut(s) 56, 614, 1144
Tru9I TTAA 3 cut(s) 56, 614, 1144
TscAI CASTG 5 cut(s) 268, 377, 409, 891, 991
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 6 cut(s) 65, 190, 605, 821, 1027, 1030
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 6 cut(s) 131, 152, 251, 494, 558, 718
TspGWI ACGGA 1 cut(s) 1077
TspRI CASTG 5 cut(s) 268, 377, 409, 891, 991
XceI RCATGY 1 cut(s) 319
XhoI CTCGAG 1 cut(s) 641
XmiI GTMKAC 2 cut(s) 978, 1094
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 1 cut(s) 81
ZraI GACGTC 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.