Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Forward (+)

993400 .. 995989

Gene Structure 2590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03905.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCGGAGAAAGATGCGACGGCGAGTGGCGATGACGCCATTAGAGTTAGCGGTATGCAATTCGCATACGAAGTTGAGGATCCAATATTCTTCGACTTCAACCTCGATCTTCCAGCTGGTTCTCGCTGTCTTCTGGTTGGTGCCAATGGATCTGGCAAGACAACCTTATTGAAGATTCTGGCTGGAAAGCATATGGTGGGAGGAAAGAACGTTGTACAAGTTCTTAGCCGCTCGGCTTTCCATGATACTCAACTTGTTTGCAGTGGTGACTTGTCTTACCTTGGAGGATCATGGAGTAAAACCGTTGGTTCAGCTGGAGAGGTTCCTCTCCAGGGAGATTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGAACTGATCCCGTGAGAAGAGAAAAACTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAAACGGCGCGTGCAGATATGTATGGGACTCTTACATCCATTCAAGGTGTTATTACTCGATGAGGTCACTGTTGACCTAGACGTCGTTGCAAGGATGGATTTGCTGGAATTCTTCAAAGAAGAATGTGATCAGAGAGGAGCTACAATCGTGTATGCAACTCACATATTCGACGGGCTAGAGACATGGGCGACACATTTGGCCTACATTCAGGACGGTGAGCTGAATCGTTTATCGAAAATGACAGATATTGAGGAGCTGAAAACTTCACCCAACCTCCTCTCCGTGGTAGAATCTTGGCTCCGTTCTGAAATCAAACTCGTGAAGAAGAAGAAGAAGCCTGTGGCGCCATGGAAACCATCTCCATTCGATAACTCTCCTTTTAGATCATCGAGACACATGGCTTATTACCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

290

Amino Acids

32.42

Weight (kDa)

6.08

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_21	PF13304	80 - 143	9e-07	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	539
AatII	GACGTC	1 cut(s)	543
AccB1I	GGYRCC	2 cut(s)	140, 802
AccBSI	CCGCTC	1 cut(s)	231
AccII	CGCG	1 cut(s)	468
AciI	CCGC	3 cut(s)	5, 51, 229
AclI	AACGTT	1 cut(s)	210
AclWI	GGATC	5 cut(s)	74, 87, 157, 295, 374
AcsI	RAATTY	1 cut(s)	566
AcyI	GRCGYC	3 cut(s)	36, 540, 803
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	332, 742
AgsI	TTSAA	6 cut(s)	100, 172, 371, 428, 502, 574
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	5 cut(s)	116, 314, 599, 679, 715
AluI	AGCT	5 cut(s)	116, 314, 599, 679, 715
Alw26I	GTCTC	2 cut(s)	632, 844
AlwI	GGATC	5 cut(s)	74, 87, 157, 295, 374
AoxI	GGCC	1 cut(s)	657
ApoI	RAATTY	1 cut(s)	566
AspLEI	GCGC	2 cut(s)	468, 805
AsuHPI	GGTGA	3 cut(s)	278, 686, 717
BamHI	GGATCC	1 cut(s)	79
BanI	GGYRCC	2 cut(s)	140, 802
BauI	CACGAG	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	122
BccI	CCATC	3 cut(s)	446, 547, 823
BceAI	ACGGC	2 cut(s)	36, 479
BciT130I	CCWGG	1 cut(s)	332
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	2 cut(s)	632, 844
BfaI	CTAG	2 cut(s)	536, 635
BfoI	RGCGCY	1 cut(s)	806
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	332
BmiI	GGNNCC	5 cut(s)	81, 142, 324, 758, 804
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	122
BpmI	CTGGAG	2 cut(s)	314, 336
BsaBI	GATNNNNATC	1 cut(s)	420
BsaHI	GRCGYC	3 cut(s)	36, 540, 803
BsaJI	CCNNGG	4 cut(s)	280, 331, 741, 806
BsaXI	ACNNNNNCTCC	4 cut(s)	717, 722, 747, 752
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 742
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	4 cut(s)	280, 331, 741, 806
BseGI	GGATG	2 cut(s)	493, 558
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	2 cut(s)	332, 742
BseMII	CTCAG	1 cut(s)	357
BseRI	GAGGAG	3 cut(s)	609, 725, 725
BsgI	GTGCAG	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	659
BshNI	GGYRCC	2 cut(s)	140, 802
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	332, 742
BsmAI	GTCTC	2 cut(s)	632, 844
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	1 cut(s)	659
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	8 cut(s)	79, 106, 149, 287, 379, 406, 586, 842
Bsp19I	CCATGG	1 cut(s)	806
BspACI	CCGC	3 cut(s)	5, 51, 229
BspANI	GGCC	1 cut(s)	659
BspCNI	CTCAG	1 cut(s)	356
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	5 cut(s)	81, 142, 324, 758, 804
BspPI	GGATC	5 cut(s)	74, 87, 157, 295, 374
BspT107I	GGYRCC	2 cut(s)	140, 802
BsrBI	CCGCTC	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	214
BssECI	CCNNGG	4 cut(s)	280, 331, 741, 806
BssMI	GATC	8 cut(s)	79, 106, 149, 287, 379, 406, 586, 842
BssNI	GRCGYC	3 cut(s)	36, 540, 803
BssSI	CACGAG	1 cut(s)	776
BssT1I	CCWWGG	2 cut(s)	280, 806
Bst2BI	CACGAG	1 cut(s)	776
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	3 cut(s)	304, 529, 674
Bst6I	CTCTTC	1 cut(s)	385
BstACI	GRCGYC	3 cut(s)	36, 540, 803
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	2 cut(s)	224, 343
BstDSI	CCRYGG	2 cut(s)	741, 806
BstF5I	GGATG	2 cut(s)	493, 558
BstFNI	CGCG	1 cut(s)	468
BstH2I	RGCGCY	1 cut(s)	806
BstHHI	GCGC	2 cut(s)	468, 805
BstKTI	GATC	8 cut(s)	82, 109, 152, 290, 382, 409, 589, 845
BstMAI	GTCTC	2 cut(s)	632, 844
BstMBI	GATC	8 cut(s)	79, 106, 149, 287, 379, 406, 586, 842
BstMWI	GCNNNNNNNGC	2 cut(s)	463, 802
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	468
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	2 cut(s)	79, 149
BstYI	RGATCY	2 cut(s)	79, 149
BsuRI	GGCC	1 cut(s)	659
BtgI	CCRYGG	2 cut(s)	741, 806
BtgZI	GCGATG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	493, 558
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	2 cut(s)	268, 525
Cac8I	GCNNGC	1 cut(s)	470
CfoI	GCGC	2 cut(s)	468, 805
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	5 cut(s)	242, 291, 642, 807, 856
CviQI	GTAC	1 cut(s)	215
DdeI	CTNAG	2 cut(s)	224, 343
DinI	GGCGCC	1 cut(s)	804
DpnI	GATC	8 cut(s)	81, 108, 151, 289, 381, 408, 588, 844
DpnII	GATC	8 cut(s)	79, 106, 149, 287, 379, 406, 586, 842
DrdI	GACNNNNNNGTC	1 cut(s)	539
DseDI	GACNNNNNNGTC	1 cut(s)	539
Eam1104I	CTCTTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	385
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	280, 806
Eco32I	GATATC	1 cut(s)	418
EcoRI	GAATTC	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	330
EcoRV	GATATC	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	280, 806
EcoT22I	ATGCAT	1 cut(s)	441
EgeI	GGCGCC	1 cut(s)	804
EheI	GGCGCC	1 cut(s)	804
ErhI	CCWWGG	2 cut(s)	280, 806
FaeI	CATG	5 cut(s)	245, 294, 645, 810, 859
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	5 cut(s)	241, 290, 641, 806, 855
FauNDI	CATATG	2 cut(s)	192, 354
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	2 cut(s)	480, 565
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	2 cut(s)	536, 635
GlaI	GCGC	2 cut(s)	467, 804
GluI	GCNGC	1 cut(s)	229
GsuI	CTGGAG	2 cut(s)	314, 336
HaeII	RGCGCY	1 cut(s)	806
HaeIII	GGCC	1 cut(s)	659
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	468, 805
Hin1I	GRCGYC	3 cut(s)	36, 540, 803
Hin1II	CATG	5 cut(s)	245, 294, 645, 810, 859
Hin6I	GCGC	2 cut(s)	466, 803
HinP1I	GCGC	2 cut(s)	466, 803
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	4 cut(s)	175, 486, 682, 749
HphI	GGTGA	3 cut(s)	278, 686, 717
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	3 cut(s)	451, 591, 766
Hpy188III	TCNNGA	4 cut(s)	413, 668, 778, 849
Hpy8I	GTNNAC	1 cut(s)	532
Hpy99I	CGWCG	3 cut(s)	22, 545, 632
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	3 cut(s)	304, 529, 674
HpyCH4IV	ACGT	2 cut(s)	210, 540
HpyCH4V	TGCA	6 cut(s)	58, 261, 439, 472, 548, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	463, 802
HpyF3I	CTNAG	2 cut(s)	224, 343
HpySE526I	ACGT	2 cut(s)	210, 540
Hsp92I	GRCGYC	3 cut(s)	36, 540, 803
Hsp92II	CATG	5 cut(s)	245, 294, 645, 810, 859
HspAI	GCGC	2 cut(s)	466, 803
KasI	GGCGCC	1 cut(s)	802
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	8 cut(s)	79, 106, 149, 287, 379, 406, 586, 842
LmnI	GCTCC	3 cut(s)	596, 712, 762
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	536, 635
MaeII	ACGT	2 cut(s)	210, 540
MaeIII	GTNAC	2 cut(s)	266, 523
MalI	GATC	8 cut(s)	81, 108, 151, 289, 381, 408, 588, 844
MbiI	CCGCTC	1 cut(s)	231
MboI	GATC	8 cut(s)	79, 106, 149, 287, 379, 406, 586, 842
MflI	RGATCY	2 cut(s)	79, 149
MluCI	AATT	2 cut(s)	59, 566
Mly113I	GGCGCC	1 cut(s)	803
MlyI	GAGTC	1 cut(s)	480
Mph1103I	ATGCAT	1 cut(s)	441
MspA1I	CMGCKG	2 cut(s)	116, 314
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	463, 802
NarI	GGCGCC	1 cut(s)	803
NcoI	CCATGG	1 cut(s)	806
NdeI	CATATG	2 cut(s)	192, 354
NdeII	GATC	8 cut(s)	79, 106, 149, 287, 379, 406, 586, 842
NlaIII	CATG	5 cut(s)	245, 294, 645, 810, 859
NlaIV	GGNNCC	5 cut(s)	81, 142, 324, 758, 804
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	2 cut(s)	266, 523
NsiI	ATGCAT	1 cut(s)	441
PfeI	GAWTC	3 cut(s)	175, 682, 749
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	480
PluTI	GGCGCC	1 cut(s)	806
PpsI	GAGTC	1 cut(s)	480
Psp1406I	AACGTT	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	5 cut(s)	81, 142, 324, 758, 804
PsuI	RGATCY	2 cut(s)	79, 149
PvuII	CAGCTG	2 cut(s)	116, 314
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	8 cut(s)	79, 106, 149, 287, 379, 406, 586, 842
SchI	GAGTC	1 cut(s)	480
ScrFI	CCNGG	1 cut(s)	332
SfaNI	GCATC	1 cut(s)	4
SfoI	GGCGCC	1 cut(s)	804
Sse9I	AATT	2 cut(s)	59, 566
SsiI	CCGC	3 cut(s)	5, 51, 229
SspDI	GGCGCC	1 cut(s)	802
SspI	AATATT	1 cut(s)	87
SspMI	CTAG	2 cut(s)	536, 635
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	2 cut(s)	280, 806
TaaI	ACNGT	3 cut(s)	304, 529, 674
TaiI	ACGT	2 cut(s)	213, 543
TaqI	TCGA	7 cut(s)	93, 105, 516, 627, 692, 825, 848
TasI	AATT	2 cut(s)	59, 566
TatI	WGTACW	1 cut(s)	214
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	3 cut(s)	175, 682, 749
TscAI	CASTG	2 cut(s)	268, 532
TseFI	GTSAC	2 cut(s)	266, 523
Tsp45I	GTSAC	2 cut(s)	266, 523
TspGWI	ACGGA	2 cut(s)	730, 749
TspRI	CASTG	2 cut(s)	268, 532
XapI	RAATTY	1 cut(s)	566
XspI	CTAG	2 cut(s)	536, 635
ZraI	GACGTC	1 cut(s)	541
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.