Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Reverse (-)

48083544 .. 48084542

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCATAAAGTATCTGATGGGCAGCGACGCCGAGTGCAAATCTGCATGGGACTTCTTTATCCTTTCAAGAATTATATGAGTGCTGCATGTTTCATTCCACGCTTGGGGTACATCCTGCACATTATAGAATCTCCACCTATTGACTTTATAATTTTGTCTTTGGACTCTGGTAGGCTAAAATGTGGTAGATTTTCTTTTGGCATATTAAAAAGTGGAAGCATTCTCATTTTCTTCCAAGTTCTGTTGCTTGATGAGGTAACAGTCGACTTGGATGTTGTTGCTAGGATGGACTTATTAGATTTCTTCAAGGAAGAATGTGAGCAGAGAGGAGCTACAATTGTATACGCAACTCATATCTTTGATGGCTTCGAAACACGGGCAACCCATTTAGCTTACATCCAAGATGGTGAGCTAAAGAGAGCTCAGAAGTTATTGGAGGTTGAAGAGTTGAAGAGTTCAGTCAGTCTGTTGTCGAGTCCTGGCTTCGTGCTGAAACCAAGCAGGAGAAAAAGAAACCCAAAAATCCTGCCCAAACGTCATCTCCTTTTGGTATGTCGTCAAGACACATGGCGTATTACCGCTGATATCTTGATGAAGTTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

201

Amino Acids

23.13

Weight (kDa)

9.37

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	149
AccI	GTMKAC	2 cut(s)	264, 342
AciI	CCGC	1 cut(s)	579
AcyI	GRCGYC	1 cut(s)	28
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	4 cut(s)	67, 307, 443, 451
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	4 cut(s)	332, 392, 412, 422
AluI	AGCT	4 cut(s)	332, 392, 412, 422
Alw21I	GWGCWC	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	22, 83
AsuHPI	GGTGA	1 cut(s)	419
AsuII	TTCGAA	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	2 cut(s)	34, 70
BccI	CCATC	4 cut(s)	11, 280, 356, 398
BciT130I	CCWGG	1 cut(s)	480
BfaI	CTAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	23, 84
BlsI	GCNGC	2 cut(s)	24, 85
Bme1390I	CCNGG	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	480
BseGI	GGATG	4 cut(s)	111, 277, 291, 396
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	34, 70
BsgI	GTGCAG	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	219
Bsp119I	TTCGAA	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	424
BspACI	CCGC	1 cut(s)	579
BspCNI	CTCAG	1 cut(s)	436
BspT104I	TTCGAA	1 cut(s)	369
BssNAI	GTATAC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	28
Bst1107I	GTATAC	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	438, 446
BstACI	GRCGYC	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	423
BstF5I	GGATG	4 cut(s)	111, 277, 291, 396
BstNI	CCWGG	1 cut(s)	480
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	478
BstV1I	GCAGC	2 cut(s)	34, 70
BstZ17I	GTATAC	1 cut(s)	343
BtsCI	GGATG	4 cut(s)	111, 277, 291, 396
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	3 cut(s)	46, 87, 567
CviJI	RGCY	7 cut(s)	175, 332, 366, 392, 412, 422, 483
CviKI_1	RGCY	7 cut(s)	175, 332, 366, 392, 412, 422, 483
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	423
Eam1104I	CTCTTC	2 cut(s)	438, 446
EarI	CTCTTC	2 cut(s)	438, 446
Ecl136II	GAGCTC	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	478
EcoRV	GATATC	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	424
FaeI	CATG	3 cut(s)	49, 90, 570
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	3 cut(s)	45, 86, 566
FblI	GTMKAC	2 cut(s)	264, 342
Fnu4HI	GCNGC	2 cut(s)	23, 84
FokI	GGATG	4 cut(s)	98, 284, 298, 383
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	2 cut(s)	23, 84
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	2 cut(s)	23, 84
HgaI	GACGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	49, 90, 570
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	3 cut(s)	128, 164, 475
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	2 cut(s)	265, 343
Hpy188I	TCNGA	2 cut(s)	16, 426
Hpy188III	TCNNGA	3 cut(s)	67, 560, 589
Hpy8I	GTNNAC	2 cut(s)	265, 343
Hpy99I	CGWCG	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	5 cut(s)	4, 37, 45, 86, 118
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	1 cut(s)	535
Hsp92I	GRCGYC	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	49, 90, 570
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	6 cut(s)	128, 153, 465, 487, 492, 539
Lsp1109I	GCAGC	2 cut(s)	34, 70
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	535
MaeIII	GTNAC	1 cut(s)	256
MboII	GAAGA	5 cut(s)	223, 295, 323, 455, 463
MfeI	CAATTG	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	3 cut(s)	70, 150, 336
MlyI	GAGTC	2 cut(s)	158, 484
MnlI	CCTC	3 cut(s)	247, 320, 430
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	206, 599
MspA1I	CMGCKG	1 cut(s)	581
MspR9I	CCNGG	1 cut(s)	480
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	480
NlaIII	CATG	3 cut(s)	49, 90, 570
NmeAIII	GCCGAG	1 cut(s)	56
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	90
NspV	TTCGAA	1 cut(s)	369
PctI	GAATGC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	24, 85
PleI	GAGTC	2 cut(s)	158, 483
PpsI	GAGTC	2 cut(s)	158, 483
PsiI	TTATAA	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SacI	GAGCTC	1 cut(s)	424
SalI	GTCGAC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	206, 599
SatI	GCNGC	2 cut(s)	23, 84
SchI	GAGTC	2 cut(s)	158, 484
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	8 cut(s)	139, 258, 334, 394, 414, 424, 441, 538
SfuI	TTCGAA	1 cut(s)	369
Sse9I	AATT	3 cut(s)	70, 150, 336
SsiI	CCGC	1 cut(s)	579
SspMI	CTAG	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	478
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	3 cut(s)	264, 369, 473
TasI	AATT	3 cut(s)	70, 150, 336
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	206, 599
Tru9I	TTAA	2 cut(s)	206, 599
TseI	GCWGC	2 cut(s)	22, 83
TspDTI	ATGAA	1 cut(s)	82
XceI	RCATGY	1 cut(s)	90
XmiI	GTMKAC	2 cut(s)	264, 342
XspI	CTAG	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.