Rw2G034360

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003870
Physical Location & Seq
Reverse (-)
56523584 .. 56524697
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034360.1

Sequence Viewer

Length: 438 bp
ATGCATAAAGTATCTGATGGGCAGCGACGCCGAGTGCAAATCTGCATGGGACTTCTTCATCCTTTCAAGGTTCTCTTGCTTGATGAGGTAACAGTCGACTTGGATGTTGTTGCTAGGATGGACTTATTAGATTTCTTCAAGGAAGAATGTGAGCAGACAGGAGCTACAATTGTATACGCAACTCATATCTTTGATGGCTTGGAAACATGGGCAACCCATTTAGCTTACATCCAAGATGGTGAGCTAAAGAGAGCTCAGAAGTTATTGGAGGTTGAAGAGTTGAAGAGTTCAGTCAATCCGCTGTCTGTTGTCGAGTCCTGGCTTCGTGCTGAAACCAAGCAGGAGAAAAAGAAACCCAAAAATCCTGCCCAAACGTCATCTCCTTTTGGTGATGAGTTCCCTTGTAGATCAAGACGGATTGATACTCTCATATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

145

Amino Acids

16.6

Weight (kDa)

5.82

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_21 PF13304 2 - 62 1.8e-06 AAA domain, putative AbiEii toxin, Type IV TA system
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 96, 174
AciI CCGC 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 28
AgsI TTSAA 4 cut(s) 67, 139, 275, 283
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 4 cut(s) 164, 224, 244, 254
AluI AGCT 4 cut(s) 164, 224, 244, 254
Alw21I GWGCWC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 22
AsuHPI GGTGA 2 cut(s) 251, 401
BanII GRGCYC 1 cut(s) 256
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 34
BccI CCATC 4 cut(s) 11, 112, 188, 230
BciT130I CCWGG 1 cut(s) 319
BfaI CTAG 1 cut(s) 114
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 319
BsaHI GRCGYC 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
BseBI CCWGG 1 cut(s) 319
BseGI GGATG 4 cut(s) 58, 109, 123, 228
BseMII CTCAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 256
BslFI GGGAC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 407
BspACI CCGC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 268
BssMI GATC 1 cut(s) 407
BssNAI GTATAC 1 cut(s) 175
BssNI GRCGYC 1 cut(s) 28
Bst1107I GTATAC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 2 cut(s) 270, 278
BstACI GRCGYC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 4 cut(s) 58, 109, 123, 228
BstKTI GATC 1 cut(s) 410
BstMBI GATC 1 cut(s) 407
BstNI CCWGG 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 34
BstZ17I GTATAC 1 cut(s) 175
BtsCI GGATG 4 cut(s) 58, 109, 123, 228
CseI GACGC 1 cut(s) 36
CviAII CATG 2 cut(s) 46, 207
CviJI RGCY 6 cut(s) 164, 198, 224, 244, 254, 322
CviKI_1 RGCY 6 cut(s) 164, 198, 224, 244, 254, 322
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 409
DpnII GATC 1 cut(s) 407
Eam1104I CTCTTC 2 cut(s) 270, 278
EarI CTCTTC 2 cut(s) 270, 278
Ecl136II GAGCTC 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 256
Eco53kI GAGCTC 1 cut(s) 254
EcoICRI GAGCTC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 317
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 256
FaeI CATG 2 cut(s) 49, 210
FaiI YATR 6 cut(s) 6, 47, 175, 186, 208, 431
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 1 cut(s) 63
FatI CATG 2 cut(s) 45, 206
FblI GTMKAC 2 cut(s) 96, 174
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 4 cut(s) 45, 116, 130, 215
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 23
HgaI GACGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 28
Hin1II CATG 2 cut(s) 49, 210
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 1 cut(s) 314
HphI GGTGA 2 cut(s) 251, 401
Hpy166II GTNNAC 2 cut(s) 97, 175
Hpy188I TCNGA 2 cut(s) 16, 258
Hpy188III TCNNGA 1 cut(s) 411
Hpy8I GTNNAC 2 cut(s) 97, 175
Hpy99I CGWCG 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 3 cut(s) 4, 37, 45
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 374
Hsp92I GRCGYC 1 cut(s) 28
Hsp92II CATG 2 cut(s) 49, 210
Kzo9I GATC 1 cut(s) 407
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 5 cut(s) 144, 304, 326, 331, 378
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 409
MboI GATC 1 cut(s) 407
MboII GAAGA 5 cut(s) 47, 127, 155, 287, 295
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 1 cut(s) 168
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 2 cut(s) 79, 262
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 436
MspA1I CMGCKG 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 319
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 319
NdeII GATC 1 cut(s) 407
NlaIII CATG 2 cut(s) 49, 210
NmeAIII GCCGAG 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp124BI GAGCTC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
SacI GAGCTC 1 cut(s) 256
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 436
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 407
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 1 cut(s) 256
SetI ASST 8 cut(s) 72, 90, 166, 226, 246, 256, 273, 377
Sse9I AATT 1 cut(s) 168
SsiI CCGC 1 cut(s) 299
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 317
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 377
TaqI TCGA 2 cut(s) 96, 312
TasI AATT 1 cut(s) 168
Tru1I TTAA 1 cut(s) 436
Tru9I TTAA 1 cut(s) 436
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 430
XmiI GTMKAC 2 cut(s) 96, 174
XspI CTAG 1 cut(s) 114
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.