Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Reverse (-)

20072857 .. 20075555

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G221200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGGGCAGGGTCAGTGAAACCTCCAATCCGAGAGCGGAAGGAGAAGGAGAGACGTCGAGCGGTATTAGAGTCCATGGCATGCAATTCTCGTACGATGCACAACCCCCGCTTTTCTGCGATTTCAACCTTAACATAGCCCCCGGGTCGCGATGCCTTCTCGTCGGCGCCAACGGATCTGGCAAGACCACTTTGCTGAAGATTTTAGCAGGGAAGCAGATGGTGGGAGGGAGAGATGTGGTGCGGGTTTTAAATTGTTCGGCTTTTCATGACACTCATTTGGTTTGCAGCGGCGATTTAGCTTACTTGGGAGGCTCGTGGAGTAAATCTGTTGGCTCTGCTGGAGAACTTCCATTGCAGGGAGATTTCTCAGCTGAACATATGATATTTGGAGTTGAAGGGACTGATCCAGTTAGGAGAGACAAGTTGATTGAGCTGCTTGATATAAACCTCCAGTGGCGAATGCATAAAGTATCTGATGGGCAACGACGTCGAGTCCAAATCTGCATGGGGCTTCTTCATCCTTTCAAGGTTCTCTTGCTTGATGAGGTAACGGTCGACTTGGATGTTGTTGCGAGACTGGACTTATTAGATTTCTTCAAGGAAGAATGTGAACAGAGAAGAGCGACAATTGTTTATGCAACCCATATTTTTGATGGGTTGGAGACATGGGCAACCCATCTGGCTTACATCCAAGATGGTGAGCTAAAGAGGGCTGAGAAGTTATCGGAGGTCAATGAGTTGAAGAGTTCGGCCAATCTGCTCTCTGTTGTTGAGTCCTGGCTTCGTGCTGAAACCAAGCATGAGAAAAAGAGATCCACAAATCCTCCTGCCCAAACTCAAAAGACCTCTGCTTTTGCTACATCTCCATTTATGTCTTCAAGACACATGGCATATTACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

302

Amino Acids

33.43

Weight (kDa)

6.56

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	59, 493
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	2 cut(s)	38, 63
AccI	GTMKAC	1 cut(s)	558
AccII	CGCG	1 cut(s)	151
AciI	CCGC	7 cut(s)	5, 38, 63, 110, 244, 291, 901
AclWI	GGATC	3 cut(s)	184, 401, 810
AcoI	YGGCCR	1 cut(s)	753
AcuI	CTGAAG	1 cut(s)	218
AcyI	GRCGYC	3 cut(s)	56, 168, 490
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	359
AgsI	TTSAA	6 cut(s)	127, 398, 529, 601, 745, 882
AhdI	GACNNNNNGTC	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	779
AluBI	AGCT	4 cut(s)	302, 374, 436, 706
AluI	AGCT	4 cut(s)	302, 374, 436, 706
Alw26I	GTCTC	4 cut(s)	47, 414, 571, 659
AlwI	GGATC	3 cut(s)	184, 401, 810
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	753
ApeKI	GCWGC	2 cut(s)	288, 436
AspLEI	GCGC	1 cut(s)	170
AsuC2I	CCSGG	2 cut(s)	144, 145
AsuHPI	GGTGA	1 cut(s)	713
AvaI	CYCGRG	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	870
BbvI	GCAGC	2 cut(s)	300, 423
BccI	CCATC	5 cut(s)	214, 473, 650, 687, 692
BcgI	CGANNNNNNTGC	2 cut(s)	473, 507
BciT130I	CCWGG	1 cut(s)	781
BcnI	CCSGG	2 cut(s)	144, 145
BcoDI	GTCTC	4 cut(s)	47, 414, 571, 659
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	3 cut(s)	289, 292, 437
BlsI	GCNGC	3 cut(s)	290, 293, 438
Bme1390I	CCNGG	3 cut(s)	144, 145, 781
BmeRI	GACNNNNNGTC	1 cut(s)	494
BmeT110I	CYCGRG	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	3 cut(s)	144, 145, 781
BmsI	GCATC	2 cut(s)	88, 143
BpiI	GAAGAC	1 cut(s)	870
BpmI	CTGGAG	2 cut(s)	363, 437
BpuMI	CCSGG	2 cut(s)	144, 145
BsaHI	GRCGYC	3 cut(s)	56, 168, 490
BsaJI	CCNNGG	3 cut(s)	76, 142, 143
BsaXI	ACNNNNNCTCC	2 cut(s)	811, 841
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	3 cut(s)	410, 454, 585
Bse3DI	GCAATG	1 cut(s)	353
BseBI	CCWGG	1 cut(s)	781
BseDI	CCNNGG	3 cut(s)	76, 142, 143
BseGI	GGATG	3 cut(s)	520, 571, 690
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	2 cut(s)	384, 708
BseNI	ACTGG	3 cut(s)	410, 454, 585
BseXI	GCAGC	2 cut(s)	300, 423
Bsh1236I	CGCG	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	1 cut(s)	755
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	558
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	144
BsiWI	CGTACG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	4 cut(s)	47, 414, 571, 659
BsmBI	CGTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	755
BsoBI	CYCGRG	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	176, 406, 815
Bsp19I	CCATGG	1 cut(s)	76
Bsp68I	TCGCGA	1 cut(s)	151
BspACI	CCGC	7 cut(s)	5, 38, 63, 110, 244, 291, 901
BspANI	GGCC	1 cut(s)	755
BspCNI	CTCAG	2 cut(s)	383, 709
BspFNI	CGCG	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	169
BspPI	GGATC	3 cut(s)	184, 401, 810
BspQI	GCTCTTC	1 cut(s)	616
BspT107I	GGYRCC	1 cut(s)	167
BsrBI	CCGCTC	2 cut(s)	38, 63
BsrDI	GCAATG	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	410, 454, 585
BssECI	CCNNGG	3 cut(s)	76, 142, 143
BssMI	GATC	3 cut(s)	176, 406, 815
BssNI	GRCGYC	3 cut(s)	56, 168, 490
BssSI	CACGAG	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	781
Bst4CI	ACNGT	1 cut(s)	556
Bst6I	CTCTTC	2 cut(s)	616, 740
BstACI	GRCGYC	3 cut(s)	56, 168, 490
BstC8I	GCNNGC	2 cut(s)	7, 83
BstDEI	CTNAG	2 cut(s)	370, 717
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	3 cut(s)	520, 571, 690
BstFNI	CGCG	1 cut(s)	151
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	3 cut(s)	179, 409, 818
BstMAI	GTCTC	4 cut(s)	47, 414, 571, 659
BstMBI	GATC	3 cut(s)	176, 406, 815
BstMCI	CGRYCG	1 cut(s)	558
BstNI	CCWGG	1 cut(s)	781
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	3 cut(s)	142, 143, 779
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	300, 423
BstV2I	GAAGAC	1 cut(s)	870
BstX2I	RGATCY	2 cut(s)	176, 815
BstYI	RGATCY	2 cut(s)	176, 815
BsuRI	GGCC	1 cut(s)	755
BtgI	CCRYGG	1 cut(s)	76
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	3 cut(s)	520, 571, 690
BtsIMutI	CAGTG	2 cut(s)	22, 461
BtuMI	TCGCGA	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	7, 83
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	1 cut(s)	170
Cfr9I	CCCGGG	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	7 cut(s)	77, 82, 269, 508, 669, 803, 889
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	370, 717
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	3 cut(s)	178, 408, 817
DpnII	GATC	3 cut(s)	176, 406, 815
DraI	TTTAAA	1 cut(s)	252
DriI	GACNNNNNGTC	1 cut(s)	494
EaeI	YGGCCR	1 cut(s)	753
Eam1104I	CTCTTC	2 cut(s)	616, 740
Eam1105I	GACNNNNNGTC	1 cut(s)	494
EarI	CTCTTC	2 cut(s)	616, 740
Eco130I	CCWWGG	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	779
EcoT14I	CCWWGG	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	468
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	47
FaeI	CATG	7 cut(s)	80, 85, 272, 511, 672, 806, 892
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	7 cut(s)	76, 81, 268, 507, 668, 802, 888
FauI	CCCGC	2 cut(s)	117, 237
FauNDI	CATATG	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	3 cut(s)	289, 292, 437
FokI	GGATG	3 cut(s)	507, 578, 677
Fsp4HI	GCNGC	3 cut(s)	289, 292, 437
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	289, 292, 437
GsuI	CTGGAG	2 cut(s)	363, 437
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	755
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	3 cut(s)	56, 168, 490
Hin1II	CATG	7 cut(s)	80, 85, 272, 511, 672, 806, 892
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	3 cut(s)	72, 495, 776
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	2 cut(s)	559, 614
Hpy188I	TCNGA	3 cut(s)	33, 478, 730
Hpy188III	TCNNGA	3 cut(s)	150, 269, 882
Hpy8I	GTNNAC	2 cut(s)	559, 614
Hpy99I	CGWCG	4 cut(s)	61, 167, 492, 495
HpyAV	CCTTC	4 cut(s)	35, 41, 167, 392
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4IV	ACGT	2 cut(s)	56, 490
HpyCH4V	TGCA	7 cut(s)	85, 101, 288, 358, 466, 507, 641
HpyF3I	CTNAG	2 cut(s)	370, 717
HpySE526I	ACGT	2 cut(s)	56, 490
Hsp92I	GRCGYC	3 cut(s)	56, 168, 490
Hsp92II	CATG	7 cut(s)	80, 85, 272, 511, 672, 806, 892
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	3 cut(s)	176, 406, 815
LguI	GCTCTTC	1 cut(s)	616
Lsp1109I	GCAGC	2 cut(s)	300, 423
LweI	GCATC	2 cut(s)	88, 143
MaeII	ACGT	2 cut(s)	56, 490
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	3 cut(s)	178, 408, 817
MbiI	CCGCTC	2 cut(s)	38, 63
MboI	GATC	3 cut(s)	176, 406, 815
MboII	GAAGA	7 cut(s)	211, 509, 589, 617, 633, 757, 870
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	2 cut(s)	176, 815
MluCI	AATT	3 cut(s)	86, 253, 630
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	3 cut(s)	81, 504, 785
MmeI	TCCRAC	1 cut(s)	642
MnlI	CCTC	9 cut(s)	34, 221, 305, 461, 541, 705, 724, 837, 859
Mph1103I	ATGCAT	1 cut(s)	468
MseI	TTAA	2 cut(s)	132, 251
MspA1I	CMGCKG	3 cut(s)	291, 374, 903
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	3 cut(s)	144, 145, 781
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	781
MvnI	CGCG	1 cut(s)	151
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	2 cut(s)	144, 145
NcoI	CCATGG	1 cut(s)	76
NdeI	CATATG	1 cut(s)	381
NdeII	GATC	3 cut(s)	176, 406, 815
NlaIII	CATG	7 cut(s)	80, 85, 272, 511, 672, 806, 892
NlaIV	GGNNCC	1 cut(s)	169
NruI	TCGCGA	1 cut(s)	151
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	1 cut(s)	85
PaeI	GCATGC	1 cut(s)	85
PagI	TCATGA	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	616
PctI	GAATGC	1 cut(s)	468
Pfl23II	CGTACG	1 cut(s)	93
PkrI	GCNGC	3 cut(s)	290, 293, 438
PleI	GAGTC	3 cut(s)	80, 503, 784
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	3 cut(s)	80, 503, 784
Psp6I	CCWGG	1 cut(s)	779
PspGI	CCWGG	1 cut(s)	779
PspLI	CGTACG	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	169
PsuI	RGATCY	2 cut(s)	176, 815
PvuII	CAGCTG	1 cut(s)	374
RruI	TCGCGA	1 cut(s)	151
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SalI	GTCGAC	1 cut(s)	557
SapI	GCTCTTC	1 cut(s)	616
SaqAI	TTAA	2 cut(s)	132, 251
SatI	GCNGC	3 cut(s)	289, 292, 437
Sau3AI	GATC	3 cut(s)	176, 406, 815
SchI	GAGTC	3 cut(s)	81, 504, 785
ScrFI	CCNGG	3 cut(s)	144, 145, 781
SfaNI	GCATC	2 cut(s)	88, 143
SfoI	GGCGCC	1 cut(s)	169
SmaI	CCCGGG	1 cut(s)	145
SphI	GCATGC	1 cut(s)	85
Sse9I	AATT	3 cut(s)	86, 253, 630
SsiI	CCGC	7 cut(s)	5, 38, 63, 110, 244, 291, 901
SspDI	GGCGCC	1 cut(s)	167
StyD4I	CCNGG	3 cut(s)	142, 143, 779
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	556
TaiI	ACGT	2 cut(s)	59, 493
TaqI	TCGA	3 cut(s)	59, 493, 558
TasI	AATT	3 cut(s)	86, 253, 630
TauI	GCSGC	1 cut(s)	294
Tru1I	TTAA	2 cut(s)	132, 251
Tru9I	TTAA	2 cut(s)	132, 251
TscAI	CASTG	2 cut(s)	22, 461
TseI	GCWGC	2 cut(s)	288, 436
TspDTI	ATGAA	2 cut(s)	257, 509
TspGWI	ACGGA	1 cut(s)	189
TspMI	CCCGGG	1 cut(s)	143
TspRI	CASTG	2 cut(s)	22, 461
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XmaI	CCCGGG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	558
ZraI	GACGTC	2 cut(s)	57, 491
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.