Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Reverse (-)

21172697 .. 21174504

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18180.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCGGAAGAGGCATCGAGCGGCATCAGAGTCCAGGGCATGCAATTTGCGTACGACCCGCAGCCCCCGCTCTTCTGCGATTTCAACCTCGAGATAACCCCTGGATCCCGATGCCTTCTCATCGGCGCCAATGGATCTGGTAAGACCACGTTGCTGAAGATTCTAGCTGGGAAGCAGATGGTGGGAGGGAGAGATGTGGTGCGAGTGTTGAATTGTTCAGCTTTTCATGACACGCATTTGGTTTGCAGTGGCGATTTGGCTTACTTGGGTGGCTCTTGGACCAAAACTGTTGGCTCTGCTGGAGAACTTCCCTTGCAGGGGGATTTCTCAGCTGAGCATATGATTTTTGGAGTCGAAGGGACTGATCCTGTTAGGAGAGATAAGTTGATTGAGCTGCTTGATATAGACCTGCGGTGGAGAATGCATAAAGTATCTGACGGGCAACGGCGTCGAGTCCAAATCTGCATGGGACTTCTTCATCCCTTTAAGGTTCTCTTGCTTGATGAGGTAACAGTCGACTTGGATGTCGTTGCTAGGATGGACTTACTCGATTTCTTCAAGGAAGAATGTGAGCAGAGAGGAGCTACAATTGTATATGCAACCCATATCTTTGATGGGTTGGAGACATGGGCAACGCATCTGGCTTACATCCAAGACGGTGAGCTAAAGAGGGCTGAGAAGTTGTCGGAGGTTAATGAGTTGAAGAGTTCGGTCAATCTGCTCTCTGTTGTTGAATCCTGGCTCCGCGCCGAGACCAAGTCTGACAAAAAGAAATCCTCAAATCCCCCTGCCCAAATGAAAAAGGCCTCTCCTTTCGCTAGTTCTCCATTCACGTCATCAAGGCACATGGCGTATTACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

288

Amino Acids

31.94

Weight (kDa)

6.26

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	417
AccB1I	GGYRCC	1 cut(s)	125
AccBSI	CCGCTC	2 cut(s)	21, 70
AccI	GTMKAC	1 cut(s)	516
AccII	CGCG	1 cut(s)	747
AciI	CCGC	7 cut(s)	5, 21, 59, 68, 412, 745, 859
AclWI	GGATC	4 cut(s)	99, 112, 142, 359
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	2 cut(s)	126, 448
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	317, 318
AgsI	TTSAA	5 cut(s)	85, 211, 559, 703, 734
AjiI	CACGTC	1 cut(s)	834
AjnI	CCWGG	3 cut(s)	33, 100, 737
AluBI	AGCT	6 cut(s)	167, 221, 332, 394, 584, 664
AluI	AGCT	6 cut(s)	167, 221, 332, 394, 584, 664
Alw26I	GTCTC	2 cut(s)	617, 746
AlwI	GGATC	4 cut(s)	99, 112, 142, 359
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	804
ApeKI	GCWGC	2 cut(s)	61, 394
AspLEI	GCGC	2 cut(s)	128, 749
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	671
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	279
BamHI	GGATCC	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	73, 381
BccI	CCATC	3 cut(s)	172, 532, 608
BceAI	ACGGC	1 cut(s)	461
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	3 cut(s)	35, 102, 739
BcoDI	GTCTC	2 cut(s)	617, 746
BfaI	CTAG	3 cut(s)	164, 534, 819
BfoI	RGCGCY	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	417
BisI	GCNGC	3 cut(s)	22, 62, 395
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	3 cut(s)	23, 63, 396
Bme1390I	CCNGG	3 cut(s)	35, 102, 739
Bme18I	GGWCC	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	89
BmgBI	CACGTC	1 cut(s)	834
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	3 cut(s)	106, 127, 743
BmrFI	CCNGG	3 cut(s)	35, 102, 739
BmsI	GCATC	4 cut(s)	23, 33, 101, 646
BpmI	CTGGAG	1 cut(s)	321
Bpu1102I	GCTNAGC	1 cut(s)	333
BsaHI	GRCGYC	2 cut(s)	126, 448
BsaI	GGTCTC	1 cut(s)	746
BsaJI	CCNNGG	2 cut(s)	34, 100
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 318
BseBI	CCWGG	3 cut(s)	35, 102, 739
BseDI	CCNNGG	2 cut(s)	34, 100
BseGI	GGATG	4 cut(s)	478, 529, 543, 648
BseLI	CCNNNNNNNGG	2 cut(s)	317, 318
BseMII	CTCAG	3 cut(s)	324, 342, 666
BseRI	GAGGAG	1 cut(s)	594
BseXI	GCAGC	2 cut(s)	73, 381
BseYI	CCCAGC	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	747
BshFI	GGCC	1 cut(s)	806
BshNI	GGYRCC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	89
BsiWI	CGTACG	1 cut(s)	51
BslFI	GGGAC	2 cut(s)	373, 483
BslI	CCNNNNNNNGG	2 cut(s)	317, 318
BsmAI	GTCTC	2 cut(s)	617, 746
BsmFI	GGGAC	2 cut(s)	373, 483
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	806
Bso31I	GGTCTC	1 cut(s)	746
BsoBI	CYCGRG	1 cut(s)	89
Bsp143I	GATC	3 cut(s)	104, 134, 364
Bsp1720I	GCTNAGC	1 cut(s)	333
BspACI	CCGC	7 cut(s)	5, 21, 59, 68, 412, 745, 859
BspANI	GGCC	1 cut(s)	806
BspCNI	CTCAG	3 cut(s)	325, 341, 667
BspFNI	CGCG	1 cut(s)	747
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	106, 127, 743
BspMI	ACCTGC	1 cut(s)	417
BspPI	GGATC	4 cut(s)	99, 112, 142, 359
BspQI	GCTCTTC	1 cut(s)	77
BspT107I	GGYRCC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	746
BsrBI	CCGCTC	2 cut(s)	21, 70
BssECI	CCNNGG	2 cut(s)	34, 100
BssMI	GATC	3 cut(s)	104, 134, 364
BssNI	GRCGYC	2 cut(s)	126, 448
Bst2UI	CCWGG	3 cut(s)	35, 102, 739
Bst4CI	ACNGT	3 cut(s)	289, 514, 659
Bst6I	CTCTTC	3 cut(s)	3, 77, 698
BstACI	GRCGYC	2 cut(s)	126, 448
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	3 cut(s)	328, 333, 675
BstF5I	GGATG	4 cut(s)	478, 529, 543, 648
BstFNI	CGCG	1 cut(s)	747
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	128, 749
BstKTI	GATC	3 cut(s)	107, 137, 367
BstMAI	GTCTC	2 cut(s)	617, 746
BstMBI	GATC	3 cut(s)	104, 134, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 67
BstNI	CCWGG	3 cut(s)	35, 102, 739
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	3 cut(s)	33, 100, 737
BstUI	CGCG	1 cut(s)	747
BstV1I	GCAGC	2 cut(s)	73, 381
BstX2I	RGATCY	2 cut(s)	104, 134
BstYI	RGATCY	2 cut(s)	104, 134
BsuRI	GGCC	1 cut(s)	806
BtrI	CACGTC	1 cut(s)	834
BtsCI	GGATG	4 cut(s)	478, 529, 543, 648
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	41
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	2 cut(s)	128, 749
Cfr13I	GGNCC	1 cut(s)	279
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	5 cut(s)	40, 227, 466, 627, 847
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	3 cut(s)	328, 333, 675
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	3 cut(s)	106, 136, 366
DpnII	GATC	3 cut(s)	104, 134, 364
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
Eam1104I	CTCTTC	3 cut(s)	3, 77, 698
EarI	CTCTTC	3 cut(s)	3, 77, 698
EciI	GGCGGA	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	806
Eco31I	GGTCTC	1 cut(s)	746
Eco47I	GGWCC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	89
EcoRII	CCWGG	3 cut(s)	33, 100, 737
EcoT22I	ATGCAT	1 cut(s)	426
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
FaeI	CATG	5 cut(s)	43, 230, 469, 630, 850
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	2 cut(s)	373, 483
FatI	CATG	5 cut(s)	39, 226, 465, 626, 846
FauI	CCCGC	2 cut(s)	66, 75
FauNDI	CATATG	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	3 cut(s)	22, 62, 395
FokI	GGATG	4 cut(s)	465, 536, 550, 635
Fsp4HI	GCNGC	3 cut(s)	22, 62, 395
FspBI	CTAG	3 cut(s)	164, 534, 819
GlaI	GCGC	2 cut(s)	127, 748
GluI	GCNGC	3 cut(s)	22, 62, 395
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	806
HgaI	GACGC	1 cut(s)	437
HhaI	GCGC	2 cut(s)	128, 749
Hin1I	GRCGYC	2 cut(s)	126, 448
Hin1II	CATG	5 cut(s)	43, 230, 469, 630, 850
Hin6I	GCGC	2 cut(s)	126, 747
HinP1I	GCGC	2 cut(s)	126, 747
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	5 cut(s)	30, 160, 351, 453, 734
HphI	GGTGA	1 cut(s)	671
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	4 cut(s)	29, 436, 688, 763
Hpy188III	TCNNGA	3 cut(s)	91, 108, 227
Hpy8I	GTNNAC	1 cut(s)	517
Hpy99I	CGWCG	1 cut(s)	453
HpyAV	CCTTC	2 cut(s)	125, 350
HpyCH4III	ACNGT	3 cut(s)	289, 514, 659
HpyCH4IV	ACGT	2 cut(s)	149, 833
HpyCH4V	TGCA	6 cut(s)	43, 246, 316, 424, 465, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 67
HpyF3I	CTNAG	3 cut(s)	328, 333, 675
HpySE526I	ACGT	2 cut(s)	149, 833
Hsp92I	GRCGYC	2 cut(s)	126, 448
Hsp92II	CATG	5 cut(s)	43, 230, 469, 630, 850
HspAI	GCGC	2 cut(s)	126, 747
KasI	GGCGCC	1 cut(s)	125
Kzo9I	GATC	3 cut(s)	104, 134, 364
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	2 cut(s)	581, 747
Lsp1109I	GCAGC	2 cut(s)	73, 381
LweI	GCATC	4 cut(s)	23, 33, 101, 646
MaeI	CTAG	3 cut(s)	164, 534, 819
MaeII	ACGT	2 cut(s)	149, 833
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	3 cut(s)	106, 136, 366
MbiI	CCGCTC	2 cut(s)	21, 70
MboI	GATC	3 cut(s)	104, 134, 364
MboII	GAAGA	7 cut(s)	20, 64, 169, 467, 547, 575, 715
MfeI	CAATTG	1 cut(s)	588
MflI	RGATCY	2 cut(s)	104, 134
MluCI	AATT	3 cut(s)	44, 211, 588
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	3 cut(s)	39, 360, 462
MmeI	TCCRAC	2 cut(s)	600, 666
MnlI	CCTC	9 cut(s)	4, 98, 179, 499, 572, 663, 682, 787, 817
Mph1103I	ATGCAT	1 cut(s)	426
MseI	TTAA	2 cut(s)	486, 693
MspA1I	CMGCKG	2 cut(s)	332, 861
MspR9I	CCNGG	3 cut(s)	35, 102, 739
MunI	CAATTG	1 cut(s)	588
Mva1269I	GAATGC	1 cut(s)	426
MvaI	CCWGG	3 cut(s)	35, 102, 739
MvnI	CGCG	1 cut(s)	747
MwoI	GCNNNNNNNGC	2 cut(s)	11, 67
NarI	GGCGCC	1 cut(s)	126
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	3 cut(s)	104, 134, 364
NlaIII	CATG	5 cut(s)	43, 230, 469, 630, 850
NlaIV	GGNNCC	3 cut(s)	106, 127, 743
NmeAIII	GCCGAG	1 cut(s)	775
NsiI	ATGCAT	1 cut(s)	426
NspI	RCATGY	1 cut(s)	43
PaeI	GCATGC	1 cut(s)	43
PaeR7I	CTCGAG	1 cut(s)	89
PagI	TCATGA	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	806
PciSI	GCTCTTC	1 cut(s)	77
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	160, 734
Pfl23II	CGTACG	1 cut(s)	51
PflFI	GACNNNGTC	1 cut(s)	757
PkrI	GCNGC	3 cut(s)	23, 63, 396
PleI	GAGTC	3 cut(s)	38, 359, 461
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	3 cut(s)	38, 359, 461
Psp6I	CCWGG	3 cut(s)	33, 100, 737
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	3 cut(s)	33, 100, 737
PspLI	CGTACG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	106, 127, 743
PspPI	GGNCC	1 cut(s)	279
PsuI	RGATCY	2 cut(s)	104, 134
PsyI	GACNNNGTC	1 cut(s)	757
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SalI	GTCGAC	1 cut(s)	515
SapI	GCTCTTC	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	486, 693
SatI	GCNGC	3 cut(s)	22, 62, 395
Sau3AI	GATC	3 cut(s)	104, 134, 364
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	3 cut(s)	39, 360, 462
ScrFI	CCNGG	3 cut(s)	35, 102, 739
SfaNI	GCATC	4 cut(s)	23, 33, 101, 646
SfoI	GGCGCC	1 cut(s)	127
Sfr274I	CTCGAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	279
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
SphI	GCATGC	1 cut(s)	43
Sse9I	AATT	3 cut(s)	44, 211, 588
SseBI	AGGCCT	1 cut(s)	806
SsiI	CCGC	7 cut(s)	5, 21, 59, 68, 412, 745, 859
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	3 cut(s)	164, 534, 819
StuI	AGGCCT	1 cut(s)	806
StyD4I	CCNGG	3 cut(s)	33, 100, 737
TaaI	ACNGT	3 cut(s)	289, 514, 659
TaiI	ACGT	2 cut(s)	152, 836
TaqI	TCGA	6 cut(s)	17, 90, 354, 451, 516, 549
TaqII	GACCGA	1 cut(s)	700
TasI	AATT	3 cut(s)	44, 211, 588
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	160, 734
Tru1I	TTAA	2 cut(s)	486, 693
Tru9I	TTAA	2 cut(s)	486, 693
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	2 cut(s)	61, 394
TspDTI	ATGAA	3 cut(s)	215, 467, 812
TspRI	CASTG	1 cut(s)	253
Tth111I	GACNNNGTC	1 cut(s)	757
VpaK11BI	GGWCC	1 cut(s)	279
XceI	RCATGY	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	611
XhoI	CTCGAG	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	3 cut(s)	164, 534, 819
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.