Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000100.1

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Forward (+)

101518 .. 102405

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000100.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgggacttcttcatcctttcaaggttctcttgcttgatgaggtaacagtcgacttggatgttgttgctaggatggacttattagatttcttcaaggaagaatgtgagcagagaggagctacaattgtatacgcaactcatatctttgatggcttggaaacatgggcaacccatttagcttacatccaagatggtgagctaaagagagctcagaagttattggaggttgaagagttgaagagttcagtcaatctgctgtctgttgtcgagtcctggcttcgtgctgaaaccaagcaggagaaaaagaaacccaaaaatcctgcacaaacgtcatctccttttggtatgtcgtcaagacacatggcgtattaccgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

125

Amino Acids

14.37

Weight (kDa)

5.8

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	51, 129
AciI	CCGC	1 cut(s)	373
AgsI	TTSAA	4 cut(s)	22, 94, 230, 238
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	4 cut(s)	119, 179, 199, 209
AluI	AGCT	4 cut(s)	119, 179, 199, 209
Alw21I	GWGCWC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	211
BccI	CCATC	3 cut(s)	67, 143, 185
BciT130I	CCWGG	1 cut(s)	274
BfaI	CTAG	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
BseBI	CCWGG	1 cut(s)	274
BseGI	GGATG	4 cut(s)	13, 64, 78, 183
BseMII	CTCAG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	129
BsgI	GTGCAG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	211
BslFI	GGGAC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	211
BspACI	CCGC	1 cut(s)	373
BspCNI	CTCAG	1 cut(s)	223
BssNAI	GTATAC	1 cut(s)	130
Bst1107I	GTATAC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	225, 233
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	4 cut(s)	13, 64, 78, 183
BstNI	CCWGG	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	272
BstZ17I	GTATAC	1 cut(s)	130
BtsCI	GGATG	4 cut(s)	13, 64, 78, 183
CviAII	CATG	2 cut(s)	162, 361
CviJI	RGCY	6 cut(s)	119, 153, 179, 199, 209, 277
CviKI_1	RGCY	6 cut(s)	119, 153, 179, 199, 209, 277
DdeI	CTNAG	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	225, 233
EarI	CTCTTC	2 cut(s)	225, 233
Ecl136II	GAGCTC	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	211
FaeI	CATG	2 cut(s)	165, 364
FaiI	YATR	5 cut(s)	130, 141, 163, 347, 362
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	161, 360
FblI	GTMKAC	2 cut(s)	51, 129
FokI	GGATG	3 cut(s)	71, 85, 170
FriOI	GRGCYC	1 cut(s)	211
FspBI	CTAG	1 cut(s)	69
Hin1II	CATG	2 cut(s)	165, 364
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	52, 130
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	354
Hpy8I	GTNNAC	2 cut(s)	52, 130
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	2 cut(s)	165, 364
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	4 cut(s)	259, 281, 286, 333
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	43
MboII	GAAGA	4 cut(s)	82, 110, 242, 250
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	3 cut(s)	34, 107, 217
MspR9I	CCNGG	1 cut(s)	274
MunI	CAATTG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	274
NlaIII	CATG	2 cut(s)	165, 364
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp124BI	GAGCTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	211
SalI	GTCGAC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	8 cut(s)	27, 45, 121, 181, 201, 211, 228, 332
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	373
SspMI	CTAG	1 cut(s)	69
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	272
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	2 cut(s)	51, 267
TasI	AATT	1 cut(s)	123
XmiI	GTMKAC	2 cut(s)	51, 129
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.