Rh6CG302600

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003870
Physical Location & Seq
Forward (+)
48312038 .. 48315680
3643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG302600.1

Sequence Viewer

Length: 537 bp
ATGGCGGAACAAGAAGCAGAGACCTCGAGCGGTATCAGAGTCAGTGGCATGCAATTCGCGTACGACGCGCAACCTCCGCTCTTCTACGACTTCAGCCTCAACATTGCTCCCGGATCACGGTGCCTTCTCGTCGGCGCCAACGGATCCGGGAAGACTACTCTGCTGAAGATTTTGGCGGGGAAGCAAATGGTGGGAGGGAGGGACGTGGTGCGGGTGTTGAATGGTTCGGCTTTTCATGACACTCATTTGGTCTGTAGCGGCGACTTGGCCTATTTGGGAGGCTCCTGGAGCAAAACTGTTGGCTGTGCTCAAAAATCTTTACCATCACTTATCACCGATGCAGTCTTGGAATCACAATATCGTAACGCTGAAGATATATACATTGAACAAAACACTTGGAGGTGCTTTGAAAAACAAAACGGATGTGTTGCCAATGTGGAGCGCGCGCGCAAAGGTCAACATCAGAACGTGGAGACCACCGCCCACCCGATTCTTCTCGGATCAATTTCTCGCGAGATCCAACGTGCCAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

178

Amino Acids

19.36

Weight (kDa)

8.28

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 30 - 64 2.5e-08 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 120, 134
AccBSI CCGCTC 2 cut(s) 30, 79
AccII CGCG 6 cut(s) 59, 68, 444, 446, 448, 513
AciI CCGC 7 cut(s) 5, 30, 77, 176, 211, 258, 480
AclWI GGATC 5 cut(s) 121, 138, 151, 508, 511
AcuI CTGAAG 3 cut(s) 76, 185, 390
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 3 cut(s) 220, 386, 410
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 284
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 2 cut(s) 14, 467
AlwI GGATC 5 cut(s) 121, 138, 151, 508, 511
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 1 cut(s) 267
AspLEI GCGC 6 cut(s) 70, 137, 444, 446, 448, 450
AsuC2I CCSGG 2 cut(s) 111, 148
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 1 cut(s) 25
BamHI GGATCC 1 cut(s) 143
BanI GGYRCC 2 cut(s) 120, 134
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 310
BccI CCATC 1 cut(s) 331
BcgI CGANNNNNNTGC 4 cut(s) 6, 37, 40, 71
BciT130I CCWGG 1 cut(s) 286
BcnI CCSGG 2 cut(s) 111, 148
BcoDI GTCTC 2 cut(s) 14, 467
BfmI CTRYAG 1 cut(s) 253
BfoI RGCGCY 1 cut(s) 138
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme1390I CCNGG 3 cut(s) 111, 148, 286
BmeT110I CYCGRG 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 205
BmiI GGNNCC 4 cut(s) 122, 136, 145, 283
BmrFI CCNGG 3 cut(s) 111, 148, 286
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 158
BpmI CTGGAG 1 cut(s) 307
BpuMI CCSGG 2 cut(s) 111, 148
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 2 cut(s) 14, 467
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 428
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 102
BsePI GCGCGC 3 cut(s) 442, 444, 446
Bsh1236I CGCG 6 cut(s) 59, 68, 444, 446, 448, 513
BshFI GGCC 1 cut(s) 269
BshNI GGYRCC 2 cut(s) 120, 134
BsiHKAI GWGCWC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 2 cut(s) 111, 147
BsiWI CGTACG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 2 cut(s) 14, 467
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 1 cut(s) 269
Bso31I GGTCTC 2 cut(s) 14, 467
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 4 cut(s) 113, 143, 500, 516
Bsp68I TCGCGA 1 cut(s) 513
BspACI CCGC 7 cut(s) 5, 30, 77, 176, 211, 258, 480
BspANI GGCC 1 cut(s) 269
BspFNI CGCG 6 cut(s) 59, 68, 444, 446, 448, 513
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 4 cut(s) 122, 136, 145, 283
BspPI GGATC 5 cut(s) 121, 138, 151, 508, 511
BspQI GCTCTTC 1 cut(s) 86
BspT107I GGYRCC 2 cut(s) 120, 134
BspTNI GGTCTC 2 cut(s) 14, 467
BsrBI CCGCTC 2 cut(s) 30, 79
BsrDI GCAATG 1 cut(s) 102
BssHII GCGCGC 3 cut(s) 442, 444, 446
BssMI GATC 4 cut(s) 113, 143, 500, 516
BssNI GRCGYC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 120, 298
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 4 cut(s) 50, 444, 446, 448
BstF5I GGATG 1 cut(s) 428
BstFNI CGCG 6 cut(s) 59, 68, 444, 446, 448, 513
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 6 cut(s) 70, 137, 444, 446, 448, 450
BstKTI GATC 4 cut(s) 116, 146, 503, 519
BstMAI GTCTC 2 cut(s) 14, 467
BstMBI GATC 4 cut(s) 113, 143, 500, 516
BstMWI GCNNNNNNNGC 3 cut(s) 65, 76, 288
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 3 cut(s) 109, 146, 284
BstSFI CTRYAG 1 cut(s) 253
BstUI CGCG 6 cut(s) 59, 68, 444, 446, 448, 513
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 2 cut(s) 143, 516
BstYI RGATCY 2 cut(s) 143, 516
BsuRI GGCC 1 cut(s) 269
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 428
BtsIMutI CAGTG 1 cut(s) 49
BtuMI TCGCGA 1 cut(s) 513
Cac8I GCNNGC 4 cut(s) 50, 444, 446, 448
CciI TCATGA 1 cut(s) 235
CfoI GCGC 6 cut(s) 70, 137, 444, 446, 448, 450
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 61
CviAII CATG 2 cut(s) 49, 236
CviJI RGCY 5 cut(s) 96, 230, 269, 282, 303
CviKI_1 RGCY 5 cut(s) 96, 230, 269, 282, 303
CviQI GTAC 1 cut(s) 61
DinI GGCGCC 1 cut(s) 136
DpnI GATC 4 cut(s) 115, 145, 502, 518
DpnII GATC 4 cut(s) 113, 143, 500, 516
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 2 cut(s) 14, 467
Eco57I CTGAAG 3 cut(s) 76, 185, 390
Eco88I CYCGRG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 284
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
FaeI CATG 2 cut(s) 52, 239
FaiI YATR 4 cut(s) 50, 237, 377, 379
FaqI GGGAC 1 cut(s) 215
FatI CATG 2 cut(s) 48, 235
FauI CCCGC 2 cut(s) 169, 204
Fnu4HI GCNGC 1 cut(s) 259
FokI GGATG 1 cut(s) 435
Fsp4HI GCNGC 1 cut(s) 259
GlaI GCGC 6 cut(s) 69, 136, 443, 445, 447, 449
GluI GCNGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 307
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 269
HapII CCGG 2 cut(s) 111, 147
HgaI GACGC 1 cut(s) 74
HhaI GCGC 6 cut(s) 70, 137, 444, 446, 448, 450
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 2 cut(s) 52, 239
Hin6I GCGC 6 cut(s) 68, 135, 442, 444, 446, 448
HinP1I GCGC 6 cut(s) 68, 135, 442, 444, 446, 448
HincII GTYRAC 1 cut(s) 458
HindII GTYRAC 1 cut(s) 458
HinfI GANTC 3 cut(s) 39, 350, 490
HpaII CCGG 2 cut(s) 111, 147
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 458
Hpy188I TCNGA 3 cut(s) 38, 465, 500
Hpy188III TCNNGA 2 cut(s) 236, 512
Hpy8I GTNNAC 1 cut(s) 458
Hpy99I CGWCG 2 cut(s) 68, 134
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 2 cut(s) 120, 298
HpyCH4IV ACGT 3 cut(s) 204, 468, 523
HpyCH4V TGCA 2 cut(s) 52, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 76, 288
HpySE526I ACGT 3 cut(s) 204, 468, 523
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 2 cut(s) 52, 239
HspAI GCGC 6 cut(s) 68, 135, 442, 444, 446, 448
KasI GGCGCC 1 cut(s) 134
Kzo9I GATC 4 cut(s) 113, 143, 500, 516
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 4 cut(s) 112, 287, 288, 439
LpnPI CCDG 4 cut(s) 124, 160, 271, 298
LweI GCATC 1 cut(s) 328
MaeII ACGT 3 cut(s) 204, 468, 523
MaeIII GTNAC 1 cut(s) 362
MalI GATC 4 cut(s) 115, 145, 502, 518
MauBI CGCGCGCG 1 cut(s) 444
MbiI CCGCTC 2 cut(s) 30, 79
MboI GATC 4 cut(s) 113, 143, 500, 516
MboII GAAGA 5 cut(s) 73, 163, 178, 383, 485
MflI RGATCY 2 cut(s) 143, 516
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 2 cut(s) 53, 504
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 7 cut(s) 34, 84, 107, 188, 192, 272, 393
MspI CCGG 2 cut(s) 111, 147
MspR9I CCNGG 3 cut(s) 111, 148, 286
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 6 cut(s) 59, 68, 444, 446, 448, 513
MwoI GCNNNNNNNGC 3 cut(s) 65, 76, 288
NarI GGCGCC 1 cut(s) 135
NciI CCSGG 2 cut(s) 111, 148
NdeII GATC 4 cut(s) 113, 143, 500, 516
NlaIII CATG 2 cut(s) 52, 239
NlaIV GGNNCC 4 cut(s) 122, 136, 145, 283
NruI TCGCGA 1 cut(s) 513
NspI RCATGY 1 cut(s) 52
PaeI GCATGC 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 25
PagI TCATGA 1 cut(s) 235
PauI GCGCGC 3 cut(s) 442, 444, 446
PciSI GCTCTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 350, 490
Pfl23II CGTACG 1 cut(s) 60
PfoI TCCNGGA 3 cut(s) 109, 146, 284
PkrI GCNGC 1 cut(s) 260
PleI GAGTC 1 cut(s) 47
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspLI CGTACG 1 cut(s) 60
PspN4I GGNNCC 4 cut(s) 122, 136, 145, 283
PspXI VCTCGAGB 1 cut(s) 25
PsuI RGATCY 2 cut(s) 143, 516
PteI GCGCGC 3 cut(s) 442, 444, 446
RruI TCGCGA 1 cut(s) 513
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 86
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 4 cut(s) 113, 143, 500, 516
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 3 cut(s) 111, 148, 286
SduI GDGCHC 1 cut(s) 310
SetI ASST 7 cut(s) 26, 76, 207, 404, 457, 471, 526
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 253
SfoI GGCGCC 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 25
SlaI CTCGAG 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SphI GCATGC 1 cut(s) 52
Sse9I AATT 2 cut(s) 53, 504
SsiI CCGC 7 cut(s) 5, 30, 77, 176, 211, 258, 480
SspDI GGCGCC 1 cut(s) 134
StyD4I CCNGG 3 cut(s) 109, 146, 284
TaaI ACNGT 2 cut(s) 120, 298
TaiI ACGT 3 cut(s) 207, 471, 526
TaqI TCGA 1 cut(s) 26
TasI AATT 2 cut(s) 53, 504
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 2 cut(s) 350, 490
TscAI CASTG 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 2 cut(s) 156, 435
TspRI CASTG 1 cut(s) 49
XceI RCATGY 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.