Rh6CG315100

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003870
Physical Location & Seq
Reverse (-)
49993568 .. 49996343
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG315100.1

Sequence Viewer

Length: 366 bp
ATGGCGGAACAAGAAGCAGAGACCTCGAGCGGTATCAGAGTCAGTGGCATGCAATTCGCGTACGACGCGCAACCTCCGCTCTTCTACGACTTCAGCCTCAACATTGCTCCCGGATCACGGTGCCTTCTCGTCGGCGCCAACGGATCCGGGAAGACTACTCTGCTGAAGATTTTGGCGGGGAAGCAAATGGTGGGAGGGAGGGACGTGGTGCGGGTGTTGAATGTGGAAGGAACTGATCCGGTTAGGAGAGAAAAGTTGATTGAGCTGCTTGATATAGATCTCAAGTGGCGAATGCATAAAGTATCTGATGGGCAGCGACGCCGAGTGCAAATCTGCATGGGACTTCTTCATCCTTTCAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

121

Amino Acids

13.46

Weight (kDa)

9.06

Isoelectric Point (pI)

55.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 30 - 63 2.3e-08 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 120, 134
AccBSI CCGCTC 2 cut(s) 30, 79
AccII CGCG 2 cut(s) 59, 68
AciI CCGC 5 cut(s) 5, 30, 77, 176, 211
AclWI GGATC 4 cut(s) 121, 138, 151, 230
AcuI CTGAAG 2 cut(s) 76, 185
AcyI GRCGYC 2 cut(s) 135, 319
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 2 cut(s) 220, 358
AjiI CACGTC 1 cut(s) 205
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 4 cut(s) 121, 138, 151, 230
Ama87I CYCGRG 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 265, 313
AspLEI GCGC 2 cut(s) 70, 137
AsuC2I CCSGG 2 cut(s) 111, 148
AvaI CYCGRG 1 cut(s) 25
BamHI GGATCC 1 cut(s) 143
BanI GGYRCC 2 cut(s) 120, 134
BbsI GAAGAC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 252, 325
BccI CCATC 1 cut(s) 302
BcgI CGANNNNNNTGC 4 cut(s) 6, 37, 40, 71
BcnI CCSGG 2 cut(s) 111, 148
BcoDI GTCTC 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 138
BglII AGATCT 1 cut(s) 277
BisI GCNGC 2 cut(s) 266, 314
BlsI GCNGC 2 cut(s) 267, 315
Bme1390I CCNGG 2 cut(s) 111, 148
BmeT110I CYCGRG 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 205
BmiI GGNNCC 3 cut(s) 122, 136, 145
BmrFI CCNGG 2 cut(s) 111, 148
BpiI GAAGAC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 2 cut(s) 111, 148
BsaBI GATNNNNATC 1 cut(s) 276
BsaHI GRCGYC 2 cut(s) 135, 319
BsaI GGTCTC 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 276
BseGI GGATG 1 cut(s) 349
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 102
BseXI GCAGC 2 cut(s) 252, 325
Bsh1236I CGCG 2 cut(s) 59, 68
BshNI GGYRCC 2 cut(s) 120, 134
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 3 cut(s) 111, 147, 239
BsiWI CGTACG 1 cut(s) 60
BslFI GGGAC 2 cut(s) 215, 354
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 14
BsmFI GGGAC 2 cut(s) 215, 354
BsmI GAATGC 1 cut(s) 297
Bso31I GGTCTC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 25
Bsp143I GATC 4 cut(s) 113, 143, 235, 277
BspACI CCGC 5 cut(s) 5, 30, 77, 176, 211
BspFNI CGCG 2 cut(s) 59, 68
BspLI GGNNCC 3 cut(s) 122, 136, 145
BspPI GGATC 4 cut(s) 121, 138, 151, 230
BspQI GCTCTTC 1 cut(s) 86
BspT107I GGYRCC 2 cut(s) 120, 134
BspTNI GGTCTC 1 cut(s) 14
BsrBI CCGCTC 2 cut(s) 30, 79
BsrDI GCAATG 1 cut(s) 102
BssMI GATC 4 cut(s) 113, 143, 235, 277
BssNI GRCGYC 2 cut(s) 135, 319
Bst4CI ACNGT 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 2 cut(s) 135, 319
BstC8I GCNNGC 1 cut(s) 50
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 2 cut(s) 59, 68
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 70, 137
BstKTI GATC 4 cut(s) 116, 146, 238, 280
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 4 cut(s) 113, 143, 235, 277
BstMWI GCNNNNNNNGC 2 cut(s) 65, 76
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 2 cut(s) 109, 146
BstUI CGCG 2 cut(s) 59, 68
BstV1I GCAGC 2 cut(s) 252, 325
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 2 cut(s) 143, 277
BstYI RGATCY 2 cut(s) 143, 277
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 50
CfoI GCGC 2 cut(s) 70, 137
CseI GACGC 2 cut(s) 74, 327
Csp6I GTAC 1 cut(s) 61
CviAII CATG 2 cut(s) 49, 337
CviJI RGCY 2 cut(s) 96, 265
CviKI_1 RGCY 2 cut(s) 96, 265
CviQI GTAC 1 cut(s) 61
DinI GGCGCC 1 cut(s) 136
DpnI GATC 4 cut(s) 115, 145, 237, 279
DpnII GATC 4 cut(s) 113, 143, 235, 277
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 76, 185
Eco88I CYCGRG 1 cut(s) 25
EcoT22I ATGCAT 1 cut(s) 297
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
FaeI CATG 2 cut(s) 52, 340
FaiI YATR 4 cut(s) 50, 275, 297, 338
FaqI GGGAC 2 cut(s) 215, 354
FatI CATG 2 cut(s) 48, 336
FauI CCCGC 2 cut(s) 169, 204
Fnu4HI GCNGC 2 cut(s) 266, 314
FokI GGATG 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 266, 314
GlaI GCGC 2 cut(s) 69, 136
GluI GCNGC 2 cut(s) 266, 314
HaeII RGCGCY 1 cut(s) 138
HapII CCGG 3 cut(s) 111, 147, 239
HgaI GACGC 2 cut(s) 74, 327
HhaI GCGC 2 cut(s) 70, 137
Hin1I GRCGYC 2 cut(s) 135, 319
Hin1II CATG 2 cut(s) 52, 340
Hin6I GCGC 2 cut(s) 68, 135
HinP1I GCGC 2 cut(s) 68, 135
HinfI GANTC 1 cut(s) 39
HpaII CCGG 3 cut(s) 111, 147, 239
Hpy188I TCNGA 2 cut(s) 38, 307
Hpy99I CGWCG 3 cut(s) 68, 134, 321
HpyAV CCTTC 2 cut(s) 134, 221
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 4 cut(s) 52, 295, 328, 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 76
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 2 cut(s) 135, 319
Hsp92II CATG 2 cut(s) 52, 340
HspAI GCGC 2 cut(s) 68, 135
KasI GGCGCC 1 cut(s) 134
Kzo9I GATC 4 cut(s) 113, 143, 235, 277
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 3 cut(s) 124, 160, 252
Lsp1109I GCAGC 2 cut(s) 252, 325
MaeII ACGT 1 cut(s) 204
MalI GATC 4 cut(s) 115, 145, 237, 279
MbiI CCGCTC 2 cut(s) 30, 79
MboI GATC 4 cut(s) 113, 143, 235, 277
MboII GAAGA 4 cut(s) 73, 163, 178, 338
MflI RGATCY 2 cut(s) 143, 277
MluCI AATT 1 cut(s) 53
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 5 cut(s) 34, 84, 107, 188, 192
Mph1103I ATGCAT 1 cut(s) 297
MseI TTAA 1 cut(s) 364
MspI CCGG 3 cut(s) 111, 147, 239
MspR9I CCNGG 2 cut(s) 111, 148
Mva1269I GAATGC 1 cut(s) 297
MvnI CGCG 2 cut(s) 59, 68
MwoI GCNNNNNNNGC 2 cut(s) 65, 76
NarI GGCGCC 1 cut(s) 135
NciI CCSGG 2 cut(s) 111, 148
NdeII GATC 4 cut(s) 113, 143, 235, 277
NlaIII CATG 2 cut(s) 52, 340
NlaIV GGNNCC 3 cut(s) 122, 136, 145
NmeAIII GCCGAG 1 cut(s) 347
NsiI ATGCAT 1 cut(s) 297
NspI RCATGY 1 cut(s) 52
PaeI GCATGC 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 86
PctI GAATGC 1 cut(s) 297
Pfl23II CGTACG 1 cut(s) 60
PfoI TCCNGGA 2 cut(s) 109, 146
PkrI GCNGC 2 cut(s) 267, 315
PleI GAGTC 1 cut(s) 47
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 47
PspLI CGTACG 1 cut(s) 60
PspN4I GGNNCC 3 cut(s) 122, 136, 145
PspXI VCTCGAGB 1 cut(s) 25
PsuI RGATCY 2 cut(s) 143, 277
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 364
SatI GCNGC 2 cut(s) 266, 314
Sau3AI GATC 4 cut(s) 113, 143, 235, 277
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 2 cut(s) 111, 148
SetI ASST 4 cut(s) 26, 76, 207, 267
SfoI GGCGCC 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 25
SlaI CTCGAG 1 cut(s) 25
SmlI CTYRAG 2 cut(s) 25, 281
SmoI CTYRAG 2 cut(s) 25, 281
SphI GCATGC 1 cut(s) 52
Sse9I AATT 1 cut(s) 53
SsiI CCGC 5 cut(s) 5, 30, 77, 176, 211
SspDI GGCGCC 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 109, 146
TaaI ACNGT 1 cut(s) 120
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 26
TasI AATT 1 cut(s) 53
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TscAI CASTG 1 cut(s) 49
TseI GCWGC 2 cut(s) 265, 313
TspDTI ATGAA 1 cut(s) 338
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 1 cut(s) 49
XceI RCATGY 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 25
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.