Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00008

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Forward (+)

28416 .. 33404

Gene Structure 4989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAAACAAGTTCTCTCGATCTCTCTCAGTTGTGAAATCCCCGTCTCTCCACCACCCCTCCCCACGACTCTCCCAATCGCCCAACCCCCCCCCCCCCCCCCCCAACGAAACCCCTCTCTCTCAGTTAGGCCTGTAAATGGACCGGGTTCGGATCGGATCGACCTAAATCCAAATCCTTTAAGAAGGCTTTGGAGAAGGGGAAGGCTAATGGTAGGAGGGTTAGGCTACATTCCTTCTCCCGATTGCCACGTCAACTCCGTCAAGTGGAACCACACCAAACAGTCATTGGTGGGGCAACATTTTGGTTGGTCTGAAATGGGAACGAATGGTGAGTTTGATTTGGTACATGATAATGATGATTATGAAGATGATGATGACTTGGAAGGAACTGATCCGGTTAGGAGAGAAAAGTTGATTGAGCTGCTTGATATAGATCTTAAGTGGCGAATGCATAAAGTATCTGATGGGCAGCGACGCCGAGTGCAAATCTGCATGGGACTTCTTCATCCTTTCAAGGTAACAGTCGACTTGGATGTTGTTGCTAGGATGGACTTATTAGATTTCTTCAAGGAAGAATGTGAGCAGAGAGGAGCTACAATTGTATACACAACTCATATCTTTGATGGCTTGGAAACATGGGCAACCCATTTAGCTTACATCCAAGATGGTGAGCTAAAGAGAGCTCAGAAGTTATTGGAGGTTGAAGAGTTGAAGAGTTCAGTCAATCTGCTATCTGTTGTCGAGTCCTGGCTTCGTGCTGAAACCAAGCAGGAGAAAAAGAAACCCAAAAATCCTGCCCAAACGTCATCTCCTTTTGGTATGTCGTCAAGACACATGGCGTATTACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

283

Amino Acids

32.27

Weight (kDa)

6.32

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	525, 603
AciI	CCGC	1 cut(s)	847
AclWI	GGATC	3 cut(s)	159, 164, 386
AcyI	GRCGYC	1 cut(s)	475
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	137, 264
AflII	CTTAAG	1 cut(s)	437
AgsI	TTSAA	4 cut(s)	514, 568, 704, 712
AjiI	CACGTC	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	746
AluBI	AGCT	5 cut(s)	421, 593, 653, 673, 683
AluI	AGCT	5 cut(s)	421, 593, 653, 673, 683
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	3 cut(s)	159, 164, 386
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	421, 469
AspS9I	GGNCC	1 cut(s)	140
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	341, 680
AvaII	GGWCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	685
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	2 cut(s)	408, 481
BccI	CCATC	4 cut(s)	458, 541, 617, 659
BciT130I	CCWGG	1 cut(s)	748
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	543
BfrI	CTTAAG	1 cut(s)	437
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	2 cut(s)	422, 470
BlsI	GCNGC	2 cut(s)	423, 471
Bme1390I	CCNGG	2 cut(s)	144, 748
Bme18I	GGWCC	1 cut(s)	140
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	2 cut(s)	144, 748
BpuMI	CCSGG	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	432
BsaHI	GRCGYC	1 cut(s)	475
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	6 cut(s)	42, 72, 239, 269, 793, 823
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 264
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	748
BseGI	GGATG	4 cut(s)	505, 538, 552, 657
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	137, 264
BseMII	CTCAG	3 cut(s)	40, 135, 698
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	2 cut(s)	408, 481
BshFI	GGCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	685
BsiSI	CCGG	2 cut(s)	143, 395
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	137, 264
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp143I	GATC	5 cut(s)	18, 151, 156, 391, 433
BspACI	CCGC	1 cut(s)	847
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	3 cut(s)	39, 134, 697
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	3 cut(s)	159, 164, 386
BspTI	CTTAAG	1 cut(s)	437
BssMI	GATC	5 cut(s)	18, 151, 156, 391, 433
BssNAI	GTATAC	1 cut(s)	604
BssNI	GRCGYC	1 cut(s)	475
Bst1107I	GTATAC	1 cut(s)	604
Bst2UI	CCWGG	1 cut(s)	748
Bst4CI	ACNGT	2 cut(s)	282, 523
Bst6I	CTCTTC	2 cut(s)	699, 707
BstACI	GRCGYC	1 cut(s)	475
BstAFI	CTTAAG	1 cut(s)	437
BstDEI	CTNAG	3 cut(s)	26, 121, 684
BstF5I	GGATG	4 cut(s)	505, 538, 552, 657
BstKTI	GATC	5 cut(s)	21, 154, 159, 394, 436
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	5 cut(s)	18, 151, 156, 391, 433
BstNI	CCWGG	1 cut(s)	748
BstSCI	CCNGG	2 cut(s)	142, 746
BstV1I	GCAGC	2 cut(s)	408, 481
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BstZ17I	GTATAC	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	130
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	4 cut(s)	505, 538, 552, 657
Cfr13I	GGNCC	1 cut(s)	140
CseI	GACGC	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	4 cut(s)	347, 493, 636, 835
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	3 cut(s)	26, 121, 684
DpnI	GATC	5 cut(s)	20, 153, 158, 393, 435
DpnII	GATC	5 cut(s)	18, 151, 156, 391, 433
Eam1104I	CTCTTC	2 cut(s)	699, 707
EarI	CTCTTC	2 cut(s)	699, 707
Ecl136II	GAGCTC	1 cut(s)	683
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	683
EcoICRI	GAGCTC	1 cut(s)	683
EcoRII	CCWGG	1 cut(s)	746
EcoT22I	ATGCAT	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	685
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	4 cut(s)	350, 496, 639, 838
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	4 cut(s)	346, 492, 635, 834
FblI	GTMKAC	2 cut(s)	525, 603
Fnu4HI	GCNGC	2 cut(s)	422, 470
FokI	GGATG	4 cut(s)	492, 545, 559, 644
FriOI	GRGCYC	1 cut(s)	685
Fsp4HI	GCNGC	2 cut(s)	422, 470
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	2 cut(s)	422, 470
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	2 cut(s)	143, 395
HgaI	GACGC	1 cut(s)	483
Hin1I	GRCGYC	1 cut(s)	475
Hin1II	CATG	4 cut(s)	350, 496, 639, 838
HincII	GTYRAC	2 cut(s)	253, 526
HindII	GTYRAC	2 cut(s)	253, 526
HinfI	GANTC	2 cut(s)	67, 743
HpaII	CCGG	2 cut(s)	143, 395
HphI	GGTGA	2 cut(s)	341, 680
Hpy166II	GTNNAC	3 cut(s)	253, 526, 604
Hpy188I	TCNGA	5 cut(s)	151, 156, 313, 463, 687
Hpy188III	TCNNGA	3 cut(s)	16, 239, 828
Hpy8I	GTNNAC	3 cut(s)	253, 526, 604
Hpy99I	CGWCG	1 cut(s)	477
HpyAV	CCTTC	5 cut(s)	177, 189, 195, 243, 377
HpyCH4III	ACNGT	2 cut(s)	282, 523
HpyCH4IV	ACGT	2 cut(s)	249, 803
HpyCH4V	TGCA	3 cut(s)	451, 484, 492
HpyF3I	CTNAG	3 cut(s)	26, 121, 684
HpySE526I	ACGT	2 cut(s)	249, 803
Hsp92I	GRCGYC	1 cut(s)	475
Hsp92II	CATG	4 cut(s)	350, 496, 639, 838
Kzo9I	GATC	5 cut(s)	18, 151, 156, 391, 433
LmnI	GCTCC	1 cut(s)	590
LpnPI	CCDG	7 cut(s)	144, 156, 408, 733, 755, 760, 807
Lsp1109I	GCAGC	2 cut(s)	408, 481
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	2 cut(s)	249, 803
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	5 cut(s)	20, 153, 158, 393, 435
MboI	GATC	5 cut(s)	18, 151, 156, 391, 433
MboII	GAAGA	6 cut(s)	377, 494, 556, 584, 716, 724
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	685
MluCI	AATT	1 cut(s)	597
MlyI	GAGTC	2 cut(s)	61, 752
MnlI	CCTC	5 cut(s)	68, 124, 209, 581, 691
Mph1103I	ATGCAT	1 cut(s)	453
MseI	TTAA	2 cut(s)	179, 438
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	849
MspCI	CTTAAG	1 cut(s)	437
MspI	CCGG	2 cut(s)	143, 395
MspR9I	CCNGG	2 cut(s)	144, 748
MunI	CAATTG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	748
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	5 cut(s)	18, 151, 156, 391, 433
NlaIII	CATG	4 cut(s)	350, 496, 639, 838
NlaIV	GGNNCC	1 cut(s)	269
NmeAIII	GCCGAG	1 cut(s)	503
NsiI	ATGCAT	1 cut(s)	453
PceI	AGGCCT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	423, 471
PleI	GAGTC	2 cut(s)	61, 751
PpsI	GAGTC	2 cut(s)	61, 751
Psp124BI	GAGCTC	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	746
PspGI	CCWGG	1 cut(s)	746
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	685
SalI	GTCGAC	1 cut(s)	524
SaqAI	TTAA	2 cut(s)	179, 438
SatI	GCNGC	2 cut(s)	422, 470
Sau3AI	GATC	5 cut(s)	18, 151, 156, 391, 433
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	2 cut(s)	61, 752
ScrFI	CCNGG	2 cut(s)	144, 748
SduI	GDGCHC	1 cut(s)	685
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	1 cut(s)	597
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	1 cut(s)	847
SspMI	CTAG	1 cut(s)	543
SstI	GAGCTC	1 cut(s)	685
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	2 cut(s)	142, 746
TaaI	ACNGT	2 cut(s)	282, 523
TaiI	ACGT	2 cut(s)	252, 806
TaqI	TCGA	4 cut(s)	17, 159, 525, 741
TasI	AATT	1 cut(s)	597
Tru1I	TTAA	2 cut(s)	179, 438
Tru9I	TTAA	2 cut(s)	179, 438
TseI	GCWGC	2 cut(s)	421, 469
TspDTI	ATGAA	3 cut(s)	17, 378, 494
TspGWI	ACGGA	1 cut(s)	247
Vha464I	CTTAAG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XmiI	GTMKAC	2 cut(s)	525, 603
XspI	CTAG	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.