Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Reverse (-)

17753959 .. 17755768

Gene Structure 1810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCGGAGAAAAATGCGAGCGCGGTGGACGGTGCAATTAGGGTTAGTGGAATGCAGTTTTCTTACGATGTTCAAGATCCTATTTTCTTCGATTTTAATCTCGATCTTCCCGCTGGATCTCGTTGCCTCTTGGTTGGTGCCAATGGATCTGGGAAAACTACGTTATTGAAGATTCTTGCTGGAAAACATATGGTTGGAGGAAAGAATGTTGTACAAGTGCTTGATCGCTCAGCATTTCATGATACAGAGCTTGTTTGTAGTGGTGATTTGTCTTACCTAGGAGGATCATGGAGTAAAACTGCTGGTTCTGCTGGTGATATTCCACTCCAAGGAGACTTCTCAGCAGAACATATGATATTTGGAGTTGAAGGGATTGATCCTTTCAGAAGAGAGAAGTTGATTGATCTTCTTGATATCAATCTTCAATGGCGTATGCATAAGGTTTCTGATGGGCAGAGACGTCGAGTGCAAATATGTATGGGTCTATTACATCCGTTCAAGGTATTACTACTGGATGAAGTTACTGTTGACCTCGACGTTGTTGCTAGGATGGATTTGTTGGAGTTCTTTAAAGAAGAATGTGAACAGAGAGGAGCTACAATTGTATATGCAACTCATATTTTCGACGGGCTCGAGACATGGGCTAGTCATTTGGCTTACATTAATGGAGGAGAGCTGAAACTCTCGGCCAAGTTAGATGAGATCAAGGATCTCAAAACCTCACCAAATCTGCTATCTGTTGTTGAAGCTTGGCTCCGGTCTGAAACCAAAGTTGAGAAAAAGACGAAGAAGAAACCTGTTGTTACCTCTCCATTTATGTCGTCTAGACAAATGGCATATTACCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

282

Amino Acids

31.36

Weight (kDa)

6.18

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	31 - 175	1.5e-14	ABC transporter
AAA_21	PF13304	143 - 206	7.8e-07	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	463
AccB1I	GGYRCC	1 cut(s)	137
AccII	CGCG	1 cut(s)	23
AciI	CCGC	3 cut(s)	5, 23, 111
AclWI	GGATC	6 cut(s)	71, 124, 154, 292, 371, 717
AcoI	YGGCCR	1 cut(s)	687
AcyI	GRCGYC	1 cut(s)	460
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	6 cut(s)	74, 169, 368, 425, 499, 746
AluBI	AGCT	4 cut(s)	250, 596, 676, 749
AluI	AGCT	4 cut(s)	250, 596, 676, 749
Alw26I	GTCTC	3 cut(s)	327, 451, 629
AlwI	GGATC	6 cut(s)	71, 124, 154, 292, 371, 717
Ama87I	CYCGRG	1 cut(s)	632
AoxI	GGCC	1 cut(s)	687
AseI	ATTAAT	1 cut(s)	663
AspA2I	CCTAGG	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	3 cut(s)	275, 326, 714
AvaI	CYCGRG	1 cut(s)	632
AvrII	CCTAGG	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	633
BccI	CCATC	2 cut(s)	443, 544
BcgI	CGANNNNNNTGC	4 cut(s)	443, 477, 524, 558
BcoDI	GTCTC	3 cut(s)	327, 451, 629
BfaI	CTAG	4 cut(s)	278, 546, 645, 825
BlnI	CCTAGG	1 cut(s)	277
BlpI	GCTNAGC	1 cut(s)	229
BmeT110I	CYCGRG	1 cut(s)	632
BmiI	GGNNCC	2 cut(s)	139, 755
Bpu1102I	GCTNAGC	1 cut(s)	229
BsaBI	GATNNNNATC	2 cut(s)	96, 417
BsaHI	GRCGYC	1 cut(s)	460
BsaJI	CCNNGG	2 cut(s)	277, 328
BsaWI	WCCGGW	1 cut(s)	756
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	516
Bse8I	GATNNNNATC	2 cut(s)	96, 417
BseDI	CCNNGG	2 cut(s)	277, 328
BseGI	GGATG	3 cut(s)	490, 520, 555
BseJI	GATNNNNATC	2 cut(s)	96, 417
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMII	CTCAG	2 cut(s)	243, 354
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	2 cut(s)	606, 684
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	689
BshNI	GGYRCC	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	632
BsiSI	CCGG	1 cut(s)	757
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	3 cut(s)	327, 451, 629
BsmBI	CGTCTC	1 cut(s)	451
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	689
BsoBI	CYCGRG	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp1407I	TGTACA	1 cut(s)	211
Bsp1720I	GCTNAGC	1 cut(s)	229
BspACI	CCGC	3 cut(s)	5, 23, 111
BspANI	GGCC	1 cut(s)	689
BspCNI	CTCAG	2 cut(s)	242, 353
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	139, 755
BspPI	GGATC	6 cut(s)	71, 124, 154, 292, 371, 717
BspT107I	GGYRCC	1 cut(s)	137
BsrGI	TGTACA	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	2 cut(s)	277, 328
BssNI	GRCGYC	1 cut(s)	460
BssT1I	CCWWGG	2 cut(s)	277, 328
Bst4CI	ACNGT	2 cut(s)	32, 526
Bst6I	CTCTTC	1 cut(s)	382
BstACI	GRCGYC	1 cut(s)	460
BstAUI	TGTACA	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	229, 340
BstF5I	GGATG	3 cut(s)	490, 520, 555
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	23
BstMAI	GTCTC	3 cut(s)	327, 451, 629
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstUI	CGCG	1 cut(s)	23
BstX2I	RGATCY	4 cut(s)	76, 116, 146, 709
BstYI	RGATCY	4 cut(s)	76, 116, 146, 709
BsuRI	GGCC	1 cut(s)	689
BtsCI	GGATG	3 cut(s)	490, 520, 555
Cac8I	GCNNGC	1 cut(s)	19
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	3 cut(s)	239, 288, 639
CviJI	RGCY	9 cut(s)	250, 596, 631, 644, 656, 676, 689, 749, 754
CviKI_1	RGCY	9 cut(s)	250, 596, 631, 644, 656, 676, 689, 749, 754
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	2 cut(s)	229, 340
DraI	TTTAAA	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	687
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	277, 328
Eco24I	GRGCYC	1 cut(s)	633
Eco32I	GATATC	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	632
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	2 cut(s)	277, 328
EcoT22I	ATGCAT	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	633
ErhI	CCWWGG	2 cut(s)	277, 328
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	3 cut(s)	242, 291, 642
FatI	CATG	3 cut(s)	238, 287, 638
FauI	CCCGC	1 cut(s)	118
FauNDI	CATATG	2 cut(s)	189, 351
FokI	GGATG	3 cut(s)	477, 527, 562
FriOI	GRGCYC	1 cut(s)	633
FspBI	CTAG	4 cut(s)	278, 546, 645, 825
GlaI	GCGC	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	689
HapII	CCGG	1 cut(s)	757
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	460
Hin1II	CATG	3 cut(s)	242, 291, 642
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	747
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	757
HphI	GGTGA	3 cut(s)	275, 326, 714
Hpy166II	GTNNAC	3 cut(s)	28, 529, 584
Hpy188I	TCNGA	3 cut(s)	386, 448, 763
Hpy188III	TCNNGA	6 cut(s)	74, 101, 239, 410, 634, 825
Hpy8I	GTNNAC	3 cut(s)	28, 529, 584
Hpy99I	CGWCG	3 cut(s)	465, 539, 629
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	2 cut(s)	32, 526
HpyCH4IV	ACGT	3 cut(s)	161, 460, 537
HpyCH4V	TGCA	5 cut(s)	35, 55, 436, 469, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	229, 340
HpySE526I	ACGT	3 cut(s)	161, 460, 537
Hsp92I	GRCGYC	1 cut(s)	460
Hsp92II	CATG	3 cut(s)	242, 291, 642
HspAI	GCGC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	593, 759
LpnPI	CCDG	8 cut(s)	99, 135, 165, 288, 297, 497, 770, 810
MaeI	CTAG	4 cut(s)	278, 546, 645, 825
MaeII	ACGT	3 cut(s)	161, 460, 537
MaeIII	GTNAC	2 cut(s)	520, 802
MboII	GAAGA	9 cut(s)	79, 98, 181, 398, 399, 413, 587, 799, 802
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	4 cut(s)	76, 116, 146, 709
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	2 cut(s)	36, 600
MmeI	TCCRAC	2 cut(s)	175, 540
MnlI	CCTC	8 cut(s)	137, 191, 275, 542, 584, 662, 730, 817
Mph1103I	ATGCAT	1 cut(s)	438
MseI	TTAA	3 cut(s)	96, 570, 663
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	1 cut(s)	757
MunI	CAATTG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	57
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeI	CATATG	2 cut(s)	189, 351
NlaIII	CATG	3 cut(s)	242, 291, 642
NlaIV	GGNNCC	2 cut(s)	139, 755
NmeAIII	GCCGAG	1 cut(s)	665
NsiI	ATGCAT	1 cut(s)	438
PaeR7I	CTCGAG	1 cut(s)	632
PagI	TCATGA	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	172
PshBI	ATTAAT	1 cut(s)	663
PspN4I	GGNNCC	2 cut(s)	139, 755
PsuI	RGATCY	4 cut(s)	76, 116, 146, 709
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SaqAI	TTAA	3 cut(s)	96, 570, 663
SduI	GDGCHC	1 cut(s)	633
Sfr274I	CTCGAG	1 cut(s)	632
SlaI	CTCGAG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	2 cut(s)	36, 600
SsiI	CCGC	3 cut(s)	5, 23, 111
SspMI	CTAG	4 cut(s)	278, 546, 645, 825
StyI	CCWWGG	2 cut(s)	277, 328
TaaI	ACNGT	2 cut(s)	32, 526
TaiI	ACGT	3 cut(s)	164, 463, 540
TaqI	TCGA	6 cut(s)	90, 102, 463, 534, 624, 633
TasI	AATT	2 cut(s)	36, 600
TatI	WGTACW	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	3 cut(s)	96, 570, 663
Tru9I	TTAA	3 cut(s)	96, 570, 663
TspDTI	ATGAA	2 cut(s)	227, 531
TspGWI	ACGGA	1 cut(s)	483
VspI	ATTAAT	1 cut(s)	663
XbaI	TCTAGA	1 cut(s)	824
XhoI	CTCGAG	1 cut(s)	632
XmaJI	CCTAGG	1 cut(s)	277
XspI	CTAG	4 cut(s)	278, 546, 645, 825
ZraI	GACGTC	1 cut(s)	461
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.