Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Forward (+)

19125816 .. 19127681

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012473

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCGGAACAAGAAGCAGAGACCGCGAGCGGTATCAGAGTCAGTGGCATGCAATTCGCGTACGACGCACAACCGCCGCTCTTCTACGACTTCAGCCTCAACATTGCTCCCGGATCGCGGTGCCTTCTCGTCGGCGCCAACGGATCCGGGAAGACTACTCTGCTGAAGATTTTGGCGGGGAAGCAAATGGTGGGAGGGAGAGATGTGGTGCGGGTGTTGAATGGTTCGGCTTTTCATGACACTCATTTGGTCTGTAGCGGCGACTTGGCCTATTTGGGAGGCTCATGGAGCAAAACTGTTGGCTGTGCTGGAGAGCTACCGCTCCAAGGAGACTTCTCTGCTGAACATATGATATTTGGAGTTGAAGGAACTGATCCAGTTAGGAGAGAAAAGTTGATTGAGCTGCTTGATATAGATCTGAAGTGGCGAATGCATAAAGTATCTGACGGGCAGCGGCGCAGAGTGCAAATCTGCATGGGACTTCTTCATCCTTTCAAGGTTCTTTTGCTTGATGAGGTAACAGTCGACTTGGATGTTGTTGCTAGGATGGACTTATTGGATTTCTTTAAGGAAGAATGTGAGCAGAGAGGAGCTACAATTGTATACGCAACTCATATCTTTGATGGCTTGGAAACATGGGCAACCCATTTAGCTTACATCCAAGATGGTGAGCTAAAGAGGGCTCAGAAGTTATTGGAGGTTGAAGAGTTGAAGAGTTCAGTCAATCTGCTTTCTGTTGTCGAGTCCTGGCTTCGTGCTGAAACCAAGCAGGAGAAAAAGAAACCCAAAAATCCTGCCCAAACGTCATCTCCTTTTGGTATGTCATCAAGACACATGGCGTATTACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

284

Amino Acids

31.51

Weight (kDa)

6.09

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	30 - 174	2.5e-15	ABC transporter
AAA_21	PF13304	141 - 205	8.3e-07	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	120, 134
AccBSI	CCGCTC	3 cut(s)	30, 79, 322
AccI	GTMKAC	2 cut(s)	525, 603
AccII	CGCG	3 cut(s)	26, 59, 118
AclWI	GGATC	4 cut(s)	121, 138, 151, 368
AcuI	CTGAAG	3 cut(s)	76, 185, 440
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	117, 326
AgsI	TTSAA	5 cut(s)	220, 365, 496, 704, 712
AjnI	CCWGG	1 cut(s)	746
AluBI	AGCT	5 cut(s)	316, 403, 593, 653, 673
AluI	AGCT	5 cut(s)	316, 403, 593, 653, 673
Alw26I	GTCTC	2 cut(s)	14, 324
AlwI	GGATC	4 cut(s)	121, 138, 151, 368
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	403, 451
AspLEI	GCGC	2 cut(s)	137, 459
AsuC2I	CCSGG	2 cut(s)	111, 148
AsuHPI	GGTGA	1 cut(s)	680
BamHI	GGATCC	1 cut(s)	143
BanI	GGYRCC	2 cut(s)	120, 134
BanII	GRGCYC	1 cut(s)	685
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	390, 463
BccI	CCATC	3 cut(s)	541, 617, 659
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	748
BcnI	CCSGG	2 cut(s)	111, 148
BcoDI	GTCTC	2 cut(s)	14, 324
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	253
BfoI	RGCGCY	1 cut(s)	138
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	5 cut(s)	77, 259, 404, 452, 455
BlsI	GCNGC	5 cut(s)	78, 260, 405, 453, 456
Bme1390I	CCNGG	3 cut(s)	111, 148, 748
BmiI	GGNNCC	3 cut(s)	122, 136, 145
BmrFI	CCNGG	3 cut(s)	111, 148, 748
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	330
BpuMI	CCSGG	2 cut(s)	111, 148
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	793, 823
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 326
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	748
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	4 cut(s)	487, 538, 552, 657
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	117, 326
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	2 cut(s)	390, 463
Bsh1236I	CGCG	3 cut(s)	26, 59, 118
BshFI	GGCC	1 cut(s)	269
BshNI	GGYRCC	2 cut(s)	120, 134
BsiSI	CCGG	2 cut(s)	111, 147
BsiWI	CGTACG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	2 cut(s)	117, 326
BsmAI	GTCTC	2 cut(s)	14, 324
BsmFI	GGGAC	1 cut(s)	492
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp143I	GATC	4 cut(s)	113, 143, 373, 415
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	697
BspFNI	CGCG	3 cut(s)	26, 59, 118
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	3 cut(s)	122, 136, 145
BspPI	GGATC	4 cut(s)	121, 138, 151, 368
BspQI	GCTCTTC	1 cut(s)	86
BspT107I	GGYRCC	2 cut(s)	120, 134
BspTNI	GGTCTC	1 cut(s)	14
BsrBI	CCGCTC	3 cut(s)	30, 79, 322
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	4 cut(s)	113, 143, 373, 415
BssNAI	GTATAC	1 cut(s)	604
BssNI	GRCGYC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	325
Bst1107I	GTATAC	1 cut(s)	604
Bst2UI	CCWGG	1 cut(s)	748
Bst4CI	ACNGT	2 cut(s)	298, 523
Bst6I	CTCTTC	3 cut(s)	86, 699, 707
BstACI	GRCGYC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	28, 50
BstDEI	CTNAG	1 cut(s)	684
BstF5I	GGATG	4 cut(s)	487, 538, 552, 657
BstFNI	CGCG	3 cut(s)	26, 59, 118
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	137, 459
BstKTI	GATC	4 cut(s)	116, 146, 376, 418
BstMAI	GTCTC	2 cut(s)	14, 324
BstMBI	GATC	4 cut(s)	113, 143, 373, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 65, 288, 463
BstNI	CCWGG	1 cut(s)	748
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	3 cut(s)	109, 146, 746
BstSFI	CTRYAG	1 cut(s)	253
BstUI	CGCG	3 cut(s)	26, 59, 118
BstV1I	GCAGC	2 cut(s)	390, 463
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	2 cut(s)	143, 415
BstYI	RGATCY	2 cut(s)	143, 415
BstZ17I	GTATAC	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	4 cut(s)	487, 538, 552, 657
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	2 cut(s)	28, 50
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	2 cut(s)	137, 459
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	6 cut(s)	49, 236, 285, 475, 636, 835
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	684
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	4 cut(s)	115, 145, 375, 417
DpnII	GATC	4 cut(s)	113, 143, 373, 415
Eam1104I	CTCTTC	3 cut(s)	86, 699, 707
EarI	CTCTTC	3 cut(s)	86, 699, 707
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	685
Eco31I	GGTCTC	1 cut(s)	14
Eco57I	CTGAAG	3 cut(s)	76, 185, 440
EcoRII	CCWGG	1 cut(s)	746
EcoT14I	CCWWGG	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	685
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	6 cut(s)	52, 239, 288, 478, 639, 838
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	6 cut(s)	48, 235, 284, 474, 635, 834
FauI	CCCGC	2 cut(s)	169, 204
FauNDI	CATATG	1 cut(s)	348
FblI	GTMKAC	2 cut(s)	525, 603
Fnu4HI	GCNGC	5 cut(s)	77, 259, 404, 452, 455
FokI	GGATG	4 cut(s)	474, 545, 559, 644
FriOI	GRGCYC	1 cut(s)	685
Fsp4HI	GCNGC	5 cut(s)	77, 259, 404, 452, 455
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	2 cut(s)	136, 458
GluI	GCNGC	5 cut(s)	77, 259, 404, 452, 455
GsuI	CTGGAG	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	2 cut(s)	111, 147
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	2 cut(s)	137, 459
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	6 cut(s)	52, 239, 288, 478, 639, 838
Hin6I	GCGC	2 cut(s)	135, 457
HinP1I	GCGC	2 cut(s)	135, 457
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	2 cut(s)	39, 743
HpaII	CCGG	2 cut(s)	111, 147
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	2 cut(s)	526, 604
Hpy188I	TCNGA	4 cut(s)	38, 420, 445, 687
Hpy188III	TCNNGA	2 cut(s)	236, 828
Hpy8I	GTNNAC	2 cut(s)	526, 604
Hpy99I	CGWCG	2 cut(s)	68, 134
HpyAV	CCTTC	2 cut(s)	134, 359
HpyCH4III	ACNGT	2 cut(s)	298, 523
HpyCH4IV	ACGT	1 cut(s)	803
HpyCH4V	TGCA	4 cut(s)	52, 433, 466, 474
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 65, 288, 463
HpyF3I	CTNAG	1 cut(s)	684
HpySE526I	ACGT	1 cut(s)	803
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	6 cut(s)	52, 239, 288, 478, 639, 838
HspAI	GCGC	2 cut(s)	135, 457
KasI	GGCGCC	1 cut(s)	134
Kzo9I	GATC	4 cut(s)	113, 143, 373, 415
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	4 cut(s)	112, 288, 327, 590
LpnPI	CCDG	8 cut(s)	124, 160, 294, 390, 733, 755, 760, 807
Lsp1109I	GCAGC	2 cut(s)	390, 463
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	803
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	4 cut(s)	115, 145, 375, 417
MbiI	CCGCTC	3 cut(s)	30, 79, 322
MboI	GATC	4 cut(s)	113, 143, 373, 415
MboII	GAAGA	7 cut(s)	73, 163, 178, 476, 584, 716, 724
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	2 cut(s)	143, 415
MhlI	GDGCHC	1 cut(s)	685
MluCI	AATT	2 cut(s)	53, 597
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	48, 752
MnlI	CCTC	7 cut(s)	107, 188, 272, 508, 581, 672, 691
Mph1103I	ATGCAT	1 cut(s)	435
MseI	TTAA	1 cut(s)	567
MspA1I	CMGCKG	2 cut(s)	454, 849
MspI	CCGG	2 cut(s)	111, 147
MspR9I	CCNGG	3 cut(s)	111, 148, 748
MunI	CAATTG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	748
MvnI	CGCG	3 cut(s)	26, 59, 118
MwoI	GCNNNNNNNGC	4 cut(s)	23, 65, 288, 463
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	2 cut(s)	111, 148
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	4 cut(s)	113, 143, 373, 415
NlaIII	CATG	6 cut(s)	52, 239, 288, 478, 639, 838
NlaIV	GGNNCC	3 cut(s)	122, 136, 145
NsiI	ATGCAT	1 cut(s)	435
NspI	RCATGY	1 cut(s)	52
PaeI	GCATGC	1 cut(s)	52
PagI	TCATGA	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	86
PctI	GAATGC	1 cut(s)	435
Pfl23II	CGTACG	1 cut(s)	60
PfoI	TCCNGGA	2 cut(s)	109, 146
PkrI	GCNGC	5 cut(s)	78, 260, 405, 453, 456
PleI	GAGTC	2 cut(s)	47, 751
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	2 cut(s)	47, 751
Psp6I	CCWGG	1 cut(s)	746
PspGI	CCWGG	1 cut(s)	746
PspLI	CGTACG	1 cut(s)	60
PspN4I	GGNNCC	3 cut(s)	122, 136, 145
PsuI	RGATCY	2 cut(s)	143, 415
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SalI	GTCGAC	1 cut(s)	524
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	5 cut(s)	77, 259, 404, 452, 455
Sau3AI	GATC	4 cut(s)	113, 143, 373, 415
SchI	GAGTC	2 cut(s)	48, 752
ScrFI	CCNGG	3 cut(s)	111, 148, 748
SduI	GDGCHC	1 cut(s)	685
SetI	ASST	9 cut(s)	318, 405, 501, 519, 595, 655, 675, 702, 806
SfcI	CTRYAG	1 cut(s)	253
SfoI	GGCGCC	1 cut(s)	136
SphI	GCATGC	1 cut(s)	52
Sse9I	AATT	2 cut(s)	53, 597
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	3 cut(s)	109, 146, 746
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	298, 523
TaiI	ACGT	1 cut(s)	806
TaqI	TCGA	2 cut(s)	525, 741
TasI	AATT	2 cut(s)	53, 597
TauI	GCSGC	3 cut(s)	79, 261, 457
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	2 cut(s)	403, 451
TspDTI	ATGAA	2 cut(s)	224, 476
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	49
XceI	RCATGY	1 cut(s)	52
XmiI	GTMKAC	2 cut(s)	525, 603
XspI	CTAG	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.