Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Reverse (-)

17632482 .. 17635255

Gene Structure 2774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g21190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCGGAACCACAAGAATCAGAGGCCTCGAGCGGCATCAGAGTCAGTGGCATGCAATTCGCATACGACGCACAGCCGCCGCTCTTCTACGACTTCAGCCTCAACGTCGCTCCCGGATCGCGGTGCCTTCTCGTCGGCGCCAACGGATCCGGGAAGACGACGCTGCTGAAAATTTTGGCGGGGAAGCAAATGGTGGGAGGGAGAGATGTGGTGCGGGTGTTGAATTGCTCGGCTTTCCATGACACTCATTTAGTTTGTAGCGGCGACTTGGCCTATTTGGGAGGCTCCTGGAGCAAAACCGTCGGCTCTGCTGGAGAGGTACCGCTGCAAGGAGACTTTTCTGCTGAACATATGATATTTGGAGTTGAAGGAACTGATCCAGTTAGGAGAGAGAAGTTGATTGAGCTGCTTGATATAGATCTGAAGTGGCGAATGCATAAAGTATCGGATGGGCAGCGGCGCCGAGTGCAAATCTGTATGGGACTTCTTCATCCTTTCAAGGTTCTCTTGCTTGATGAGGTAACAGTCGACTTGGATGTTGTTGCTAGGATGGACTTATTAGAATTCTTCAAGGAAGAATGTGAGCAGAGAGGAGCTACAATTGTGTACGCAACACATATCTTTGATGGCTTGGAAACATGGGCAACCCATTTAGCTTACATCCAAGATGGTGAGCTAAAGAAGGCTCAGAAATTATTGGAGGTTGAAGAGTTGAAGAATTCTGTCAATCTGCTTTCTGTTGTCGAGTCCTGGCTTCGTGCTGAAACCAAGCAGGAGAAAAAGAAAACCAAAAATCCTGCCCAAACGTCATCTCCTTTTGGTATGTCGTCAAGACAAATGGCGTATTACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

285

Amino Acids

31.62

Weight (kDa)

6.01

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	31 - 175	6.5e-15	ABC transporter
AAA_21	PF13304	142 - 206	3.8e-07	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	319
AccB1I	GGYRCC	4 cut(s)	123, 137, 319, 459
AccBSI	CCGCTC	2 cut(s)	33, 82
AccI	GTMKAC	1 cut(s)	528
AccII	CGCG	1 cut(s)	121
AclWI	GGATC	4 cut(s)	124, 141, 154, 371
AcsI	RAATTY	3 cut(s)	171, 563, 718
AcuI	CTGAAG	2 cut(s)	79, 443
AcyI	GRCGYC	2 cut(s)	138, 460
AfaI	GTAC	2 cut(s)	321, 608
AfiI	CCNNNNNNNGG	2 cut(s)	120, 329
AgsI	TTSAA	6 cut(s)	223, 368, 499, 571, 707, 715
AjnI	CCWGG	2 cut(s)	287, 749
AluBI	AGCT	4 cut(s)	406, 596, 656, 676
AluI	AGCT	4 cut(s)	406, 596, 656, 676
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	4 cut(s)	124, 141, 154, 371
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	24, 270
ApeKI	GCWGC	4 cut(s)	163, 325, 406, 454
ApoI	RAATTY	3 cut(s)	171, 563, 718
Asp718I	GGTACC	1 cut(s)	319
AspLEI	GCGC	2 cut(s)	140, 462
AsuC2I	CCSGG	2 cut(s)	114, 151
AsuHPI	GGTGA	1 cut(s)	683
AvaI	CYCGRG	1 cut(s)	28
BamHI	GGATCC	1 cut(s)	146
BanI	GGYRCC	4 cut(s)	123, 137, 319, 459
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	4 cut(s)	150, 312, 393, 466
BccI	CCATC	4 cut(s)	443, 544, 620, 662
BcgI	CGANNNNNNTGC	4 cut(s)	40, 74, 283, 317
BciT130I	CCWGG	2 cut(s)	289, 751
BcnI	CCSGG	2 cut(s)	114, 151
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	546
BfoI	RGCGCY	2 cut(s)	141, 463
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	9 cut(s)	34, 77, 80, 164, 262, 326, 407, 455, 458
BlsI	GCNGC	9 cut(s)	35, 78, 81, 165, 263, 327, 408, 456, 459
Bme1390I	CCNGG	4 cut(s)	114, 151, 289, 751
BmeT110I	CYCGRG	1 cut(s)	28
BmiI	GGNNCC	7 cut(s)	9, 125, 139, 148, 286, 321, 461
BmrFI	CCNGG	4 cut(s)	114, 151, 289, 751
BmsI	GCATC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	2 cut(s)	310, 333
BpuMI	CCSGG	2 cut(s)	114, 151
BsaBI	GATNNNNATC	1 cut(s)	417
BsaHI	GRCGYC	2 cut(s)	138, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	796, 826
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 329
Bse1I	ACTGG	1 cut(s)	380
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	289, 751
BseGI	GGATG	5 cut(s)	454, 490, 541, 555, 660
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	2 cut(s)	120, 329
BseMII	CTCAG	1 cut(s)	701
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	4 cut(s)	150, 312, 393, 466
Bsh1236I	CGCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	26, 272
BshNI	GGYRCC	4 cut(s)	123, 137, 319, 459
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	114, 150
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	2 cut(s)	120, 329
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	495
BsmI	GAATGC	1 cut(s)	438
BsnI	GGCC	2 cut(s)	26, 272
BsoBI	CYCGRG	1 cut(s)	28
Bsp143I	GATC	4 cut(s)	116, 146, 376, 418
BspANI	GGCC	2 cut(s)	26, 272
BspCNI	CTCAG	1 cut(s)	700
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	7 cut(s)	9, 125, 139, 148, 286, 321, 461
BspPI	GGATC	4 cut(s)	124, 141, 154, 371
BspQI	GCTCTTC	1 cut(s)	89
BspT107I	GGYRCC	4 cut(s)	123, 137, 319, 459
BsrBI	CCGCTC	2 cut(s)	33, 82
BsrI	ACTGG	1 cut(s)	380
BssMI	GATC	4 cut(s)	116, 146, 376, 418
BssNI	GRCGYC	2 cut(s)	138, 460
Bst2UI	CCWGG	2 cut(s)	289, 751
Bst4CI	ACNGT	2 cut(s)	301, 526
Bst6I	CTCTTC	2 cut(s)	89, 702
BstACI	GRCGYC	2 cut(s)	138, 460
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	687
BstF5I	GGATG	5 cut(s)	454, 490, 541, 555, 660
BstFNI	CGCG	1 cut(s)	121
BstH2I	RGCGCY	2 cut(s)	141, 463
BstHHI	GCGC	2 cut(s)	140, 462
BstKTI	GATC	4 cut(s)	119, 149, 379, 421
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	4 cut(s)	116, 146, 376, 418
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 291, 466
BstNI	CCWGG	2 cut(s)	289, 751
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	4 cut(s)	112, 149, 287, 749
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	4 cut(s)	150, 312, 393, 466
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	2 cut(s)	146, 418
BstYI	RGATCY	2 cut(s)	146, 418
BsuRI	GGCC	2 cut(s)	26, 272
BtsCI	GGATG	5 cut(s)	454, 490, 541, 555, 660
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	53
CfoI	GCGC	2 cut(s)	140, 462
CseI	GACGC	2 cut(s)	77, 169
Csp6I	GTAC	2 cut(s)	320, 607
CviAII	CATG	3 cut(s)	52, 239, 639
CviQI	GTAC	2 cut(s)	320, 607
DdeI	CTNAG	1 cut(s)	687
DinI	GGCGCC	2 cut(s)	139, 461
DpnI	GATC	4 cut(s)	118, 148, 378, 420
DpnII	GATC	4 cut(s)	116, 146, 376, 418
Eam1104I	CTCTTC	2 cut(s)	89, 702
EarI	CTCTTC	2 cut(s)	89, 702
EciI	GGCGGA	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	26
Eco57I	CTGAAG	2 cut(s)	79, 443
Eco88I	CYCGRG	1 cut(s)	28
EcoRI	GAATTC	2 cut(s)	563, 718
EcoRII	CCWGG	2 cut(s)	287, 749
EcoT22I	ATGCAT	1 cut(s)	438
EgeI	GGCGCC	2 cut(s)	139, 461
EheI	GGCGCC	2 cut(s)	139, 461
FaeI	CATG	3 cut(s)	55, 242, 642
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	3 cut(s)	51, 238, 638
FauI	CCCGC	2 cut(s)	172, 207
FauNDI	CATATG	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	9 cut(s)	34, 77, 80, 164, 262, 326, 407, 455, 458
FokI	GGATG	5 cut(s)	461, 477, 548, 562, 647
Fsp4HI	GCNGC	9 cut(s)	34, 77, 80, 164, 262, 326, 407, 455, 458
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	2 cut(s)	139, 461
GluI	GCNGC	9 cut(s)	34, 77, 80, 164, 262, 326, 407, 455, 458
GsuI	CTGGAG	2 cut(s)	310, 333
HaeII	RGCGCY	2 cut(s)	141, 463
HaeIII	GGCC	2 cut(s)	26, 272
HapII	CCGG	2 cut(s)	114, 150
HgaI	GACGC	2 cut(s)	77, 169
HhaI	GCGC	2 cut(s)	140, 462
Hin1I	GRCGYC	2 cut(s)	138, 460
Hin1II	CATG	3 cut(s)	55, 242, 642
Hin6I	GCGC	2 cut(s)	138, 460
HinP1I	GCGC	2 cut(s)	138, 460
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	3 cut(s)	17, 42, 746
HpaII	CCGG	2 cut(s)	114, 150
HphI	GGTGA	1 cut(s)	683
Hpy166II	GTNNAC	2 cut(s)	529, 607
Hpy188I	TCNGA	5 cut(s)	22, 41, 423, 448, 690
Hpy188III	TCNNGA	1 cut(s)	831
Hpy8I	GTNNAC	2 cut(s)	529, 607
Hpy99I	CGWCG	5 cut(s)	71, 110, 137, 163, 305
HpyAV	CCTTC	3 cut(s)	137, 362, 676
HpyCH4III	ACNGT	2 cut(s)	301, 526
HpyCH4IV	ACGT	2 cut(s)	105, 806
HpyCH4V	TGCA	4 cut(s)	55, 328, 436, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 291, 466
HpyF3I	CTNAG	1 cut(s)	687
HpySE526I	ACGT	2 cut(s)	105, 806
Hsp92I	GRCGYC	2 cut(s)	138, 460
Hsp92II	CATG	3 cut(s)	55, 242, 642
HspAI	GCGC	2 cut(s)	138, 460
KasI	GGCGCC	2 cut(s)	137, 459
KpnI	GGTACC	1 cut(s)	323
Kzo9I	GATC	4 cut(s)	116, 146, 376, 418
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	4 cut(s)	115, 290, 291, 593
Lsp1109I	GCAGC	4 cut(s)	150, 312, 393, 466
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	2 cut(s)	105, 806
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	4 cut(s)	118, 148, 378, 420
MbiI	CCGCTC	2 cut(s)	33, 82
MboI	GATC	4 cut(s)	116, 146, 376, 418
MboII	GAAGA	7 cut(s)	76, 166, 479, 559, 587, 719, 727
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	2 cut(s)	146, 418
MluCI	AATT	7 cut(s)	56, 171, 223, 563, 600, 692, 718
Mly113I	GGCGCC	2 cut(s)	138, 460
MlyI	GAGTC	2 cut(s)	51, 755
MnlI	CCTC	9 cut(s)	16, 37, 110, 191, 275, 310, 511, 584, 694
Mph1103I	ATGCAT	1 cut(s)	438
MspA1I	CMGCKG	3 cut(s)	325, 457, 852
MspI	CCGG	2 cut(s)	114, 150
MspR9I	CCNGG	4 cut(s)	114, 151, 289, 751
MunI	CAATTG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	2 cut(s)	289, 751
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	3 cut(s)	68, 291, 466
NarI	GGCGCC	2 cut(s)	138, 460
NciI	CCSGG	2 cut(s)	114, 151
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	4 cut(s)	116, 146, 376, 418
NlaIII	CATG	3 cut(s)	55, 242, 642
NlaIV	GGNNCC	7 cut(s)	9, 125, 139, 148, 286, 321, 461
NmeAIII	GCCGAG	2 cut(s)	209, 488
NsiI	ATGCAT	1 cut(s)	438
NspI	RCATGY	1 cut(s)	55
PaeI	GCATGC	1 cut(s)	55
PaeR7I	CTCGAG	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	17
PfoI	TCCNGGA	3 cut(s)	112, 149, 287
PkrI	GCNGC	9 cut(s)	35, 78, 81, 165, 263, 327, 408, 456, 459
PleI	GAGTC	2 cut(s)	50, 754
PluTI	GGCGCC	2 cut(s)	141, 463
PpsI	GAGTC	2 cut(s)	50, 754
Psp6I	CCWGG	2 cut(s)	287, 749
PspGI	CCWGG	2 cut(s)	287, 749
PspN4I	GGNNCC	7 cut(s)	9, 125, 139, 148, 286, 321, 461
PspXI	VCTCGAGB	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	146, 418
RsaI	GTAC	2 cut(s)	321, 608
RsaNI	GTAC	2 cut(s)	320, 607
SalI	GTCGAC	1 cut(s)	527
SapI	GCTCTTC	1 cut(s)	89
SatI	GCNGC	9 cut(s)	34, 77, 80, 164, 262, 326, 407, 455, 458
Sau3AI	GATC	4 cut(s)	116, 146, 376, 418
SchI	GAGTC	2 cut(s)	51, 755
ScrFI	CCNGG	4 cut(s)	114, 151, 289, 751
SfaNI	GCATC	1 cut(s)	45
SfoI	GGCGCC	2 cut(s)	139, 461
Sfr274I	CTCGAG	1 cut(s)	28
SlaI	CTCGAG	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
SphI	GCATGC	1 cut(s)	55
Sse9I	AATT	7 cut(s)	56, 171, 223, 563, 600, 692, 718
SseBI	AGGCCT	1 cut(s)	26
SspDI	GGCGCC	2 cut(s)	137, 459
SspMI	CTAG	1 cut(s)	546
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	4 cut(s)	112, 149, 287, 749
TaaI	ACNGT	2 cut(s)	301, 526
TaiI	ACGT	2 cut(s)	108, 809
TaqI	TCGA	3 cut(s)	29, 528, 744
TasI	AATT	7 cut(s)	56, 171, 223, 563, 600, 692, 718
TauI	GCSGC	5 cut(s)	36, 79, 82, 264, 460
TfiI	GAWTC	1 cut(s)	17
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	4 cut(s)	163, 325, 406, 454
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	52
XapI	RAATTY	3 cut(s)	171, 563, 718
XceI	RCATGY	1 cut(s)	55
XhoI	CTCGAG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	1 cut(s)	546
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.