Rorug06G0190700

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003870
Physical Location & Seq
Reverse (-)
30553073 .. 30556829
3757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0190700.1

Sequence Viewer

Length: 768 bp
ATGGAAGCAGCGATGGGTTTGATGCGAAGAATGCCTCCCAAGCACATCGACACCGCTCTCTCCGCGCTCCTCTCTCTTCTTCCCCAGCACTCCTCTGATCTTCTCTCTCAAGTCGATCAGCCACTCCAGGTTTTGTGCGATGCCGAGTACGGCAAGGAGTTCATTTTGTGCGAATACAATAGAGATGCAGACTCCTACAGATCACCTTGGTCAAATGTATATCATCCACCGTTGGAAGATGGCAGCCTCCCATCTGCGGAGTTGAGGCAACTTGAAATTGAAGCAAACGACATCTTTGCCGTTTATCGTGACCAGTATTATGAGGGTGGCATTTCGTCAGTTTATATGTGGGAGGATGATAATGAAGGCTTCGTAGGCTGCTTTTTAATAAAGAAAGATGGCTCCAAGACTGGGCAAGGTCGGAGAGGTTATCTGCAGGAGGGGGCATGGGATGCTATACATGTTATTGAGGTGGGTCCAGAGGAGGAAGGAACAACCAATTACCGTTTAACCAGCACTGTAATGCTATCTTTGACTACCGATAATGAGTCATCTGGCACATTCAGTTTGTCTGGATCAATTAGAAGACAGATGAACATGCGGCTCTCAGTTCAAGAAGGCCATCTGTGTAATATGGGAAAAATGATAGAAGAAATGGAGAGTAAGCTGCGAAACTCACTGGATCAGGTTTACTTTGGGAAGACGAAAGAAATGGTTTGCACTCTAAGACCACCAGCTGAAGTTGTGATGAGACTGCCTGACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

255

Amino Acids

28.78

Weight (kDa)

4.76

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F_actin_cap_B PF01115 1 - 239 5.8e-98 F-actin capping protein, beta subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 56
AccII CGCG 1 cut(s) 65
AciI CCGC 4 cut(s) 54, 63, 257, 601
AclWI GGATC 2 cut(s) 583, 690
AcuI CTGAAG 1 cut(s) 759
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 256, 411
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 3 cut(s) 275, 281, 614
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 3 cut(s) 667, 737, 765
AluI AGCT 3 cut(s) 667, 737, 765
Alw26I GTCTC 1 cut(s) 745
AlwI GGATC 2 cut(s) 583, 690
AoxI GGCC 1 cut(s) 619
ApeKI GCWGC 4 cut(s) 8, 243, 378, 667
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 476
AsuHPI GGTGA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 476
BbsI GAAGAC 2 cut(s) 592, 707
BbvI GCAGC 4 cut(s) 20, 255, 365, 654
BccI CCATC 5 cut(s) 7, 233, 259, 392, 630
BceAI ACGGC 2 cut(s) 166, 284
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 745
BfmI CTRYAG 2 cut(s) 196, 434
BisI GCNGC 5 cut(s) 9, 244, 379, 602, 668
BlsI GCNGC 5 cut(s) 10, 245, 380, 603, 669
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 2 cut(s) 403, 477
BmrFI CCNGG 1 cut(s) 128
BmrI ACTGGG 1 cut(s) 420
BmsI GCATC 4 cut(s) 12, 130, 175, 442
BmuI ACTGGG 1 cut(s) 420
BpiI GAAGAC 2 cut(s) 592, 707
BpmI CTGGAG 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 411
Bse1I ACTGG 3 cut(s) 313, 415, 684
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 3 cut(s) 223, 361, 457
BseLI CCNNNNNNNGG 2 cut(s) 256, 411
BseMII CTCAG 1 cut(s) 621
BseNI ACTGG 3 cut(s) 313, 415, 684
BseRI GAGGAG 3 cut(s) 59, 82, 497
BseXI GCAGC 4 cut(s) 20, 255, 365, 654
BseYI CCCAGC 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 621
BslI CCNNNNNNNGG 2 cut(s) 256, 411
BsmAI GTCTC 1 cut(s) 745
BsmI GAATGC 1 cut(s) 36
BsnI GGCC 1 cut(s) 621
Bsp143I GATC 5 cut(s) 97, 115, 200, 575, 682
BspACI CCGC 4 cut(s) 54, 63, 257, 601
BspANI GGCC 1 cut(s) 621
BspCNI CTCAG 1 cut(s) 620
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 403, 477
BspMAI CTGCAG 1 cut(s) 438
BspPI GGATC 2 cut(s) 583, 690
BsrBI CCGCTC 1 cut(s) 56
BsrI ACTGG 3 cut(s) 313, 415, 684
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 5 cut(s) 97, 115, 200, 575, 682
BssT1I CCWWGG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 3 cut(s) 231, 506, 520
Bst6I CTCTTC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 452
BstDEI CTNAG 2 cut(s) 607, 725
BstF5I GGATG 3 cut(s) 223, 361, 457
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 5 cut(s) 100, 118, 203, 578, 685
BstMAI GTCTC 1 cut(s) 745
BstMBI GATC 5 cut(s) 97, 115, 200, 575, 682
BstMWI GCNNNNNNNGC 5 cut(s) 31, 40, 62, 375, 452
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 2 cut(s) 464, 601
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 2 cut(s) 196, 434
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 4 cut(s) 20, 255, 365, 654
BstV2I GAAGAC 2 cut(s) 592, 707
BsuRI GGCC 1 cut(s) 621
BtgZI GCGATG 2 cut(s) 26, 153
BtsCI GGATG 3 cut(s) 223, 361, 457
BtsIMutI CAGTG 2 cut(s) 516, 677
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 476
Csp6I GTAC 1 cut(s) 148
CviAII CATG 3 cut(s) 447, 461, 598
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 2 cut(s) 607, 725
DpnI GATC 5 cut(s) 99, 117, 202, 577, 684
DpnII GATC 5 cut(s) 97, 115, 200, 575, 682
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 759
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
FaeI CATG 3 cut(s) 450, 464, 601
FaiI YATR 9 cut(s) 220, 321, 345, 347, 448, 458, 462, 599, 635
FatI CATG 3 cut(s) 446, 460, 597
Fnu4HI GCNGC 5 cut(s) 9, 244, 379, 602, 668
FokI GGATG 3 cut(s) 210, 368, 464
Fsp4HI GCNGC 5 cut(s) 9, 244, 379, 602, 668
GlaI GCGC 1 cut(s) 66
GluI GCNGC 5 cut(s) 9, 244, 379, 602, 668
GsaI CCCAGC 1 cut(s) 88
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 621
HhaI GCGC 1 cut(s) 67
Hin1II CATG 3 cut(s) 450, 464, 601
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 2 cut(s) 191, 548
HphI GGTGA 1 cut(s) 195
Hpy166II GTNNAC 1 cut(s) 691
Hpy188I TCNGA 2 cut(s) 97, 423
Hpy188III TCNNGA 4 cut(s) 308, 479, 573, 614
Hpy8I GTNNAC 1 cut(s) 691
HpyAV CCTTC 3 cut(s) 359, 482, 611
HpyCH4III ACNGT 3 cut(s) 231, 506, 520
HpyCH4V TGCA 3 cut(s) 188, 436, 720
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 40, 62, 375, 452
HpyF3I CTNAG 2 cut(s) 607, 725
Hsp92II CATG 3 cut(s) 450, 464, 601
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 5 cut(s) 97, 115, 200, 575, 682
LmnI GCTCC 2 cut(s) 72, 407
Lsp1109I GCAGC 4 cut(s) 20, 255, 365, 654
LweI GCATC 4 cut(s) 12, 130, 175, 442
MaeIII GTNAC 1 cut(s) 308
MalI GATC 5 cut(s) 99, 117, 202, 577, 684
MbiI CCGCTC 1 cut(s) 56
MboI GATC 5 cut(s) 97, 115, 200, 575, 682
MboII GAAGA 8 cut(s) 39, 68, 71, 92, 248, 597, 662, 712
MluCI AATT 3 cut(s) 276, 499, 579
MlyI GAGTC 2 cut(s) 185, 557
MmeI TCCRAC 2 cut(s) 213, 401
MseI TTAA 2 cut(s) 386, 509
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 2 cut(s) 737, 765
MspR9I CCNGG 1 cut(s) 128
Mva1269I GAATGC 1 cut(s) 36
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 5 cut(s) 31, 40, 62, 375, 452
NdeII GATC 5 cut(s) 97, 115, 200, 575, 682
NlaIII CATG 3 cut(s) 450, 464, 601
NlaIV GGNNCC 2 cut(s) 403, 477
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 2 cut(s) 464, 601
PciI ACATGT 1 cut(s) 460
PctI GAATGC 1 cut(s) 36
PkrI GCNGC 5 cut(s) 10, 245, 380, 603, 669
PleI GAGTC 2 cut(s) 185, 556
PpsI GAGTC 2 cut(s) 185, 556
PscI ACATGT 1 cut(s) 460
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 403, 477
PspPI GGNCC 1 cut(s) 476
PstI CTGCAG 1 cut(s) 438
PvuII CAGCTG 2 cut(s) 737, 765
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 521
SaqAI TTAA 2 cut(s) 386, 509
SatI GCNGC 5 cut(s) 9, 244, 379, 602, 668
Sau3AI GATC 5 cut(s) 97, 115, 200, 575, 682
Sau96I GGNCC 1 cut(s) 476
SchI GAGTC 2 cut(s) 185, 557
ScrFI CCNGG 1 cut(s) 128
SetI ASST 9 cut(s) 132, 208, 421, 430, 474, 669, 690, 739, 767
SfaNI GCATC 4 cut(s) 12, 130, 175, 442
SfcI CTRYAG 2 cut(s) 196, 434
SinI GGWCC 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 3 cut(s) 276, 499, 579
SsiI CCGC 4 cut(s) 54, 63, 257, 601
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 3 cut(s) 231, 506, 520
TaqI TCGA 2 cut(s) 48, 114
TasI AATT 3 cut(s) 276, 499, 579
TauI GCSGC 1 cut(s) 604
Tru1I TTAA 2 cut(s) 386, 509
Tru9I TTAA 2 cut(s) 386, 509
TscAI CASTG 2 cut(s) 523, 684
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 4 cut(s) 8, 243, 378, 667
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 151, 378, 608
TspRI CASTG 2 cut(s) 523, 684
VpaK11BI GGWCC 1 cut(s) 476
XceI RCATGY 2 cut(s) 464, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.