Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003877.1

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Forward (+)

95831 .. 97703

Gene Structure 1873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003877.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggcggaacaagaagccgagacctcgagcggtatcagagtcagcggcatgcaattcgcgtacgacgcgcaaccgccgctcttctacgacttcagcctcaacattgctcccggatcgcggtgccttctcgtcggcgccaacggatccgggaagactactctgctgaagattttggcggggaagcaaatggtgggagggagggacgtggtgcgggtgttgaatggttcggcttttcatgacactcatttggtctgtagcggcgacttggcctatttgggaggctcctggagcaaaactgttggctgtgctggagagctgccgctccaaggagacttctctgctgaacatatgatatttggagtggaaggaactgatccggttaggagagaaaagttgattgagctgcttgatatagatctcaagtggcgaatgcataaagtatctgatgggcagcgacgccgggtgcaaatctgcatgggacttcttcatcctttcaaggttctcttgcttgatgaggtaacagtcgacttggatgttgttgctaggatggacttattagatttcttcaaggaagaatgtgagcagagaggagcaacaattgtatacgcaactcatatctttgatggcttggaaacatgggcaacccatttagcttacatccaagatggtgagctaaagagagctcagaagttattggaagttgaagagttgaagagttcagtcagtctgttgtcgagtcctggcttcgtgcttaaaccaagcaggagaaaaagaaacccaaaaatcctgcccaaacgtcatctccttttggtatgtcgtcaagacacatggcgtattaccgctgatatcttgatgaagttaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

288

Amino Acids

32.19

Weight (kDa)

7.66

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	120, 134
AccBSI	CCGCTC	3 cut(s)	30, 79, 322
AccI	GTMKAC	2 cut(s)	525, 603
AccII	CGCG	3 cut(s)	59, 68, 118
AclWI	GGATC	4 cut(s)	121, 138, 151, 368
AcuI	CTGAAG	2 cut(s)	76, 185
AcyI	GRCGYC	2 cut(s)	135, 457
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	117, 326
AgsI	TTSAA	5 cut(s)	220, 496, 568, 704, 712
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	284, 739
AluBI	AGCT	5 cut(s)	316, 403, 653, 673, 683
AluI	AGCT	5 cut(s)	316, 403, 653, 673, 683
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	2 cut(s)	14, 324
AlwI	GGATC	4 cut(s)	121, 138, 151, 368
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	3 cut(s)	316, 403, 451
AspLEI	GCGC	2 cut(s)	70, 137
AsuC2I	CCSGG	3 cut(s)	111, 148, 461
AsuHPI	GGTGA	1 cut(s)	680
AvaI	CYCGRG	1 cut(s)	25
BamHI	GGATCC	1 cut(s)	143
BanI	GGYRCC	2 cut(s)	120, 134
BanII	GRGCYC	1 cut(s)	685
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	3 cut(s)	303, 390, 463
BccI	CCATC	4 cut(s)	440, 541, 617, 659
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	2 cut(s)	286, 741
BcnI	CCSGG	3 cut(s)	111, 148, 461
BcoDI	GTCTC	2 cut(s)	14, 324
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	253
BfoI	RGCGCY	1 cut(s)	138
BglII	AGATCT	1 cut(s)	415
BisI	GCNGC	7 cut(s)	46, 77, 259, 317, 320, 404, 452
BlsI	GCNGC	7 cut(s)	47, 78, 260, 318, 321, 405, 453
Bme1390I	CCNGG	5 cut(s)	111, 148, 286, 461, 741
BmeT110I	CYCGRG	1 cut(s)	25
BmgBI	CACGTC	1 cut(s)	205
BmiI	GGNNCC	4 cut(s)	122, 136, 145, 283
BmrFI	CCNGG	5 cut(s)	111, 148, 286, 461, 741
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	2 cut(s)	307, 330
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	3 cut(s)	111, 148, 461
BsaBI	GATNNNNATC	1 cut(s)	414
BsaHI	GRCGYC	2 cut(s)	135, 457
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 326
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	286, 741
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	4 cut(s)	487, 538, 552, 657
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	117, 326
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	698
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	3 cut(s)	303, 390, 463
Bsh1236I	CGCG	3 cut(s)	59, 68, 118
BshFI	GGCC	1 cut(s)	269
BshNI	GGYRCC	2 cut(s)	120, 134
BsiHKAI	GWGCWC	1 cut(s)	685
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	4 cut(s)	111, 147, 377, 460
BsiWI	CGTACG	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	215, 492
BslI	CCNNNNNNNGG	2 cut(s)	117, 326
BsmAI	GTCTC	2 cut(s)	14, 324
BsmFI	GGGAC	2 cut(s)	215, 492
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp143I	GATC	4 cut(s)	113, 143, 373, 415
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	697
BspFNI	CGCG	3 cut(s)	59, 68, 118
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	4 cut(s)	122, 136, 145, 283
BspPI	GGATC	4 cut(s)	121, 138, 151, 368
BspQI	GCTCTTC	1 cut(s)	86
BspT107I	GGYRCC	2 cut(s)	120, 134
BspTNI	GGTCTC	1 cut(s)	14
BsrBI	CCGCTC	3 cut(s)	30, 79, 322
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	4 cut(s)	113, 143, 373, 415
BssNAI	GTATAC	1 cut(s)	604
BssNI	GRCGYC	2 cut(s)	135, 457
BssT1I	CCWWGG	1 cut(s)	325
Bst1107I	GTATAC	1 cut(s)	604
Bst2UI	CCWGG	2 cut(s)	286, 741
Bst4CI	ACNGT	2 cut(s)	298, 523
Bst6I	CTCTTC	3 cut(s)	86, 699, 707
BstACI	GRCGYC	2 cut(s)	135, 457
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	684
BstF5I	GGATG	4 cut(s)	487, 538, 552, 657
BstFNI	CGCG	3 cut(s)	59, 68, 118
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	70, 137
BstKTI	GATC	4 cut(s)	116, 146, 376, 418
BstMAI	GTCTC	2 cut(s)	14, 324
BstMBI	GATC	4 cut(s)	113, 143, 373, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 76, 288
BstNI	CCWGG	2 cut(s)	286, 741
BstNSI	RCATGY	1 cut(s)	52
BstSCI	CCNGG	5 cut(s)	109, 146, 284, 459, 739
BstSFI	CTRYAG	1 cut(s)	253
BstUI	CGCG	3 cut(s)	59, 68, 118
BstV1I	GCAGC	3 cut(s)	303, 390, 463
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	2 cut(s)	143, 415
BstYI	RGATCY	2 cut(s)	143, 415
BstZ17I	GTATAC	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	269
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	4 cut(s)	487, 538, 552, 657
Cac8I	GCNNGC	1 cut(s)	50
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	2 cut(s)	70, 137
CseI	GACGC	2 cut(s)	74, 465
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	5 cut(s)	49, 236, 475, 636, 828
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	684
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	4 cut(s)	115, 145, 375, 417
DpnII	GATC	4 cut(s)	113, 143, 373, 415
Eam1104I	CTCTTC	3 cut(s)	86, 699, 707
EarI	CTCTTC	3 cut(s)	86, 699, 707
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	683
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	685
Eco31I	GGTCTC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	847
Eco53kI	GAGCTC	1 cut(s)	683
Eco57I	CTGAAG	2 cut(s)	76, 185
Eco88I	CYCGRG	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	284, 739
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	685
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	5 cut(s)	52, 239, 478, 639, 831
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	2 cut(s)	215, 492
FatI	CATG	5 cut(s)	48, 235, 474, 635, 827
FauI	CCCGC	2 cut(s)	169, 204
FauNDI	CATATG	1 cut(s)	348
FblI	GTMKAC	2 cut(s)	525, 603
Fnu4HI	GCNGC	7 cut(s)	46, 77, 259, 317, 320, 404, 452
FokI	GGATG	4 cut(s)	474, 545, 559, 644
FriOI	GRGCYC	1 cut(s)	685
Fsp4HI	GCNGC	7 cut(s)	46, 77, 259, 317, 320, 404, 452
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	2 cut(s)	69, 136
GluI	GCNGC	7 cut(s)	46, 77, 259, 317, 320, 404, 452
GsuI	CTGGAG	2 cut(s)	307, 330
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	4 cut(s)	111, 147, 377, 460
HgaI	GACGC	2 cut(s)	74, 465
HhaI	GCGC	2 cut(s)	70, 137
Hin1I	GRCGYC	2 cut(s)	135, 457
Hin1II	CATG	5 cut(s)	52, 239, 478, 639, 831
Hin6I	GCGC	2 cut(s)	68, 135
HinP1I	GCGC	2 cut(s)	68, 135
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	2 cut(s)	39, 736
HpaII	CCGG	4 cut(s)	111, 147, 377, 460
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	2 cut(s)	526, 604
Hpy188I	TCNGA	3 cut(s)	38, 445, 687
Hpy188III	TCNNGA	3 cut(s)	236, 821, 850
Hpy8I	GTNNAC	2 cut(s)	526, 604
Hpy99I	CGWCG	3 cut(s)	68, 134, 459
HpyAV	CCTTC	2 cut(s)	134, 359
HpyCH4III	ACNGT	2 cut(s)	298, 523
HpyCH4IV	ACGT	2 cut(s)	204, 796
HpyCH4V	TGCA	4 cut(s)	52, 433, 466, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 76, 288
HpyF3I	CTNAG	1 cut(s)	684
HpySE526I	ACGT	2 cut(s)	204, 796
Hsp92I	GRCGYC	2 cut(s)	135, 457
Hsp92II	CATG	5 cut(s)	52, 239, 478, 639, 831
HspAI	GCGC	2 cut(s)	68, 135
KasI	GGCGCC	1 cut(s)	134
Kzo9I	GATC	4 cut(s)	113, 143, 373, 415
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	5 cut(s)	112, 287, 288, 327, 590
Lsp1109I	GCAGC	3 cut(s)	303, 390, 463
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	2 cut(s)	204, 796
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	4 cut(s)	115, 145, 375, 417
MbiI	CCGCTC	3 cut(s)	30, 79, 322
MboI	GATC	4 cut(s)	113, 143, 373, 415
MboII	GAAGA	8 cut(s)	73, 163, 178, 476, 556, 584, 716, 724
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	2 cut(s)	143, 415
MhlI	GDGCHC	1 cut(s)	685
MluCI	AATT	2 cut(s)	53, 597
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	48, 745
MnlI	CCTC	7 cut(s)	34, 107, 188, 192, 272, 508, 581
Mph1103I	ATGCAT	1 cut(s)	435
MseI	TTAA	2 cut(s)	753, 860
MspA1I	CMGCKG	2 cut(s)	45, 842
MspI	CCGG	4 cut(s)	111, 147, 377, 460
MspR9I	CCNGG	5 cut(s)	111, 148, 286, 461, 741
MunI	CAATTG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	435
MvaI	CCWGG	2 cut(s)	286, 741
MvnI	CGCG	3 cut(s)	59, 68, 118
MwoI	GCNNNNNNNGC	3 cut(s)	65, 76, 288
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	3 cut(s)	111, 148, 461
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	4 cut(s)	113, 143, 373, 415
NlaIII	CATG	5 cut(s)	52, 239, 478, 639, 831
NlaIV	GGNNCC	4 cut(s)	122, 136, 145, 283
NmeAIII	GCCGAG	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	435
NspI	RCATGY	1 cut(s)	52
PaeI	GCATGC	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	25
PagI	TCATGA	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	86
PctI	GAATGC	1 cut(s)	435
Pfl23II	CGTACG	1 cut(s)	60
PfoI	TCCNGGA	3 cut(s)	109, 146, 284
PkrI	GCNGC	7 cut(s)	47, 78, 260, 318, 321, 405, 453
PleI	GAGTC	2 cut(s)	47, 744
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	2 cut(s)	47, 744
Psp124BI	GAGCTC	1 cut(s)	685
Psp6I	CCWGG	2 cut(s)	284, 739
PspGI	CCWGG	2 cut(s)	284, 739
PspLI	CGTACG	1 cut(s)	60
PspN4I	GGNNCC	4 cut(s)	122, 136, 145, 283
PspXI	VCTCGAGB	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	143, 415
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	685
SalI	GTCGAC	1 cut(s)	524
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	753, 860
SatI	GCNGC	7 cut(s)	46, 77, 259, 317, 320, 404, 452
Sau3AI	GATC	4 cut(s)	113, 143, 373, 415
SchI	GAGTC	2 cut(s)	48, 745
ScrFI	CCNGG	5 cut(s)	111, 148, 286, 461, 741
SduI	GDGCHC	1 cut(s)	685
SfcI	CTRYAG	1 cut(s)	253
SfoI	GGCGCC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	25
SlaI	CTCGAG	1 cut(s)	25
SmlI	CTYRAG	2 cut(s)	25, 419
SmoI	CTYRAG	2 cut(s)	25, 419
SphI	GCATGC	1 cut(s)	52
Sse9I	AATT	2 cut(s)	53, 597
SspDI	GGCGCC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	543
SstI	GAGCTC	1 cut(s)	685
StyD4I	CCNGG	5 cut(s)	109, 146, 284, 459, 739
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	298, 523
TaiI	ACGT	2 cut(s)	207, 799
TaqI	TCGA	3 cut(s)	26, 525, 734
TasI	AATT	2 cut(s)	53, 597
TauI	GCSGC	4 cut(s)	48, 79, 261, 322
Tru1I	TTAA	2 cut(s)	753, 860
Tru9I	TTAA	2 cut(s)	753, 860
TseI	GCWGC	3 cut(s)	316, 403, 451
TspDTI	ATGAA	2 cut(s)	224, 476
TspGWI	ACGGA	1 cut(s)	156
XceI	RCATGY	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	25
XmiI	GTMKAC	2 cut(s)	525, 603
XspI	CTAG	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.