Rroxscaffold_7G00181290

ABC transporter I family member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
20462098 .. 20464676
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181290.1

Sequence Viewer

Length: 1044 bp
ATGGCGGAACAAGAAGCAGAGACCTCGAGCGGTATCAGAGTCAGTGGCATGCAATTCGCGTACGACGCGCAACCGCCGCTCTTCTACGACTTCAGCCTCAACATTGCTCCCGGATCGCGGTGCCTTCTCGTCGGCGCCAACGGATCCGGGAAGACTACTCTGCTGAAGATTTTGGCGGGGAAGCAAATGGTGGGAGGGAGGGATGTGGTGCGGGTGTTGAATGGTTCGGCTTTTCATGACACTCATTTGGTCTGTAGCGGCGACTTGGCCTATTTGGGAGGCTCTTGGAGCAAAACTGTTGGCTGTGCTGGAGAGCTGCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATATTTGGAGTTGAAGGAACTGATCCAGTTAGGAGAGAAAAGTTGATTGAGCTGCTTGATATAGATCTGAAGTGGCGAATGCATAAAGTATCTGATGGGCAGCGACGCCGAGTGCAAATCTGCATGGGACTTCTTCATCCTTTCAAGGTTCTCTTGCTTGATGAGGTAACAGTCGACTTGGATGTTGTTGCTAGGATGGACTTATTGGATTTCTTTAAGGAAGAATGTGAGCAGAGAGGAGCTACAATTGTATATGCAACTCATATCTTTGATGGCTTGGAACCATGGGCAACCCATTTAGCTTACATCCAAGATGGTGAGCTAAAGAGGGCTCAGAAGTTATTGGAGGTTGAAGAGTTGAAGAGTTCAGTCAATCTGCTTTCTGTTGTCGAGTCCTGGCTTCGTGCTGAAACGAAGCAGGAAAAAAGAAACCCAAATATCCTGCCCAAACGTCATCTCCTTTTGTCTCAGTTCGACTCTGTTTTGATGCTTGTTTCTGCCTTATGTCTGGAACATCATGATCTTGTGCTTTCAAATGGCCTGGAATTATGTACTCTTTTAGGTTTTCCAGATTGCAAAAATAGTCTGCAGAAAATGTTGCCTGTTGCTTCAGTAGTTTCATCTTCTTTTTACGAAAAGATAATGTTGGACCATCTCACGCATTCGATGCCATTTGAATCAAGACTCTTATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

347

Amino Acids

38.7

Weight (kDa)

5.66

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 30 - 174 4.2e-15 ABC transporter
AAA_21 PF13304 141 - 205 1.2e-06 AAA domain, putative AbiEii toxin, Type IV TA system
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 120, 134
AccBSI CCGCTC 3 cut(s) 30, 79, 322
AccI GTMKAC 1 cut(s) 525
AccII CGCG 3 cut(s) 59, 68, 118
AciI CCGC 9 cut(s) 5, 30, 74, 77, 118, 176, 211, 258, 320
AclWI GGATC 4 cut(s) 121, 138, 151, 368
AcuI CTGAAG 4 cut(s) 76, 185, 440, 945
AcyI GRCGYC 2 cut(s) 135, 457
AfaI GTAC 2 cut(s) 62, 904
AfiI CCNNNNNNNGG 2 cut(s) 117, 326
AgsI TTSAA 7 cut(s) 220, 365, 496, 704, 712, 885, 1028
AjnI CCWGG 2 cut(s) 746, 891
AluBI AGCT 5 cut(s) 316, 403, 593, 653, 673
AluI AGCT 5 cut(s) 316, 403, 593, 653, 673
Alw26I GTCTC 3 cut(s) 14, 324, 822
AlwI GGATC 4 cut(s) 121, 138, 151, 368
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 2 cut(s) 267, 889
ApeKI GCWGC 3 cut(s) 316, 403, 451
AspLEI GCGC 2 cut(s) 70, 137
AspS9I GGNCC 1 cut(s) 1000
AsuC2I CCSGG 2 cut(s) 111, 148
AsuHPI GGTGA 1 cut(s) 680
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 1 cut(s) 1000
BamHI GGATCC 1 cut(s) 143
BanI GGYRCC 2 cut(s) 120, 134
BanII GRGCYC 1 cut(s) 685
BbsI GAAGAC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 303, 390, 463
BccI CCATC 5 cut(s) 440, 541, 617, 659, 1011
BcgI CGANNNNNNTGC 4 cut(s) 6, 37, 40, 71
BciT130I CCWGG 2 cut(s) 748, 893
BcnI CCSGG 2 cut(s) 111, 148
BcoDI GTCTC 3 cut(s) 14, 324, 822
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 2 cut(s) 253, 938
BfoI RGCGCY 1 cut(s) 138
BglII AGATCT 1 cut(s) 415
BisI GCNGC 6 cut(s) 77, 259, 317, 320, 404, 452
BlsI GCNGC 6 cut(s) 78, 260, 318, 321, 405, 453
Bme1390I CCNGG 4 cut(s) 111, 148, 748, 893
Bme18I GGWCC 1 cut(s) 1000
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 1000
BmiI GGNNCC 4 cut(s) 122, 136, 145, 633
BmrFI CCNGG 4 cut(s) 111, 148, 748, 893
BmsI GCATC 2 cut(s) 828, 1008
BpiI GAAGAC 1 cut(s) 158
BpmI CTGGAG 1 cut(s) 330
BpuMI CCSGG 2 cut(s) 111, 148
BsaBI GATNNNNATC 1 cut(s) 414
BsaHI GRCGYC 2 cut(s) 135, 457
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 325, 635
BsaXI ACNNNNNCTCC 2 cut(s) 792, 822
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 326
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 2 cut(s) 748, 893
BseDI CCNNGG 2 cut(s) 325, 635
BseGI GGATG 5 cut(s) 208, 487, 538, 552, 657
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 117, 326
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 2 cut(s) 698, 833
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 603
BseXI GCAGC 3 cut(s) 303, 390, 463
Bsh1236I CGCG 3 cut(s) 59, 68, 118
BshFI GGCC 2 cut(s) 269, 891
BshNI GGYRCC 2 cut(s) 120, 134
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 2 cut(s) 111, 147
BsiWI CGTACG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 492
BslI CCNNNNNNNGG 2 cut(s) 117, 326
BsmAI GTCTC 3 cut(s) 14, 324, 822
BsmFI GGGAC 1 cut(s) 492
BsmI GAATGC 2 cut(s) 435, 1012
BsnI GGCC 2 cut(s) 269, 891
Bso31I GGTCTC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 685
Bsp143I GATC 5 cut(s) 113, 143, 373, 415, 871
Bsp19I CCATGG 1 cut(s) 635
BspACI CCGC 9 cut(s) 5, 30, 74, 77, 118, 176, 211, 258, 320
BspANI GGCC 2 cut(s) 269, 891
BspCNI CTCAG 2 cut(s) 697, 832
BspFNI CGCG 3 cut(s) 59, 68, 118
BspHI TCATGA 2 cut(s) 235, 868
BspLI GGNNCC 4 cut(s) 122, 136, 145, 633
BspMAI CTGCAG 1 cut(s) 942
BspPI GGATC 4 cut(s) 121, 138, 151, 368
BspQI GCTCTTC 1 cut(s) 86
BspT107I GGYRCC 2 cut(s) 120, 134
BspTNI GGTCTC 1 cut(s) 14
BsrBI CCGCTC 3 cut(s) 30, 79, 322
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 325, 635
BssMI GATC 5 cut(s) 113, 143, 373, 415, 871
BssNI GRCGYC 2 cut(s) 135, 457
BssT1I CCWWGG 2 cut(s) 325, 635
Bst2UI CCWGG 2 cut(s) 748, 893
Bst4CI ACNGT 2 cut(s) 298, 523
Bst6I CTCTTC 3 cut(s) 86, 699, 707
BstACI GRCGYC 2 cut(s) 135, 457
BstAPI GCANNNNNTGC 1 cut(s) 1018
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 684, 819
BstDSI CCRYGG 1 cut(s) 635
BstF5I GGATG 5 cut(s) 208, 487, 538, 552, 657
BstFNI CGCG 3 cut(s) 59, 68, 118
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 70, 137
BstKTI GATC 5 cut(s) 116, 146, 376, 418, 874
BstMAI GTCTC 3 cut(s) 14, 324, 822
BstMBI GATC 5 cut(s) 113, 143, 373, 415, 871
BstMWI GCNNNNNNNGC 4 cut(s) 65, 76, 288, 1018
BstNI CCWGG 2 cut(s) 748, 893
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 4 cut(s) 109, 146, 746, 891
BstSFI CTRYAG 2 cut(s) 253, 938
BstUI CGCG 3 cut(s) 59, 68, 118
BstV1I GCAGC 3 cut(s) 303, 390, 463
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 2 cut(s) 143, 415
BstYI RGATCY 2 cut(s) 143, 415
BsuRI GGCC 2 cut(s) 269, 891
BtgI CCRYGG 1 cut(s) 635
BtsCI GGATG 5 cut(s) 208, 487, 538, 552, 657
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 2 cut(s) 235, 868
CfoI GCGC 2 cut(s) 70, 137
Cfr13I GGNCC 1 cut(s) 1000
CseI GACGC 2 cut(s) 74, 465
Csp6I GTAC 2 cut(s) 61, 903
CviAII CATG 5 cut(s) 49, 236, 475, 636, 869
CviQI GTAC 2 cut(s) 61, 903
DdeI CTNAG 2 cut(s) 684, 819
DinI GGCGCC 1 cut(s) 136
DpnI GATC 5 cut(s) 115, 145, 375, 417, 873
DpnII GATC 5 cut(s) 113, 143, 373, 415, 871
Eam1104I CTCTTC 3 cut(s) 86, 699, 707
EarI CTCTTC 3 cut(s) 86, 699, 707
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 325, 635
Eco24I GRGCYC 1 cut(s) 685
Eco31I GGTCTC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 1000
Eco57I CTGAAG 4 cut(s) 76, 185, 440, 945
Eco88I CYCGRG 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 746, 891
EcoT14I CCWWGG 2 cut(s) 325, 635
EcoT22I ATGCAT 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 685
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 2 cut(s) 325, 635
FaeI CATG 5 cut(s) 52, 239, 478, 639, 872
FalI AAGNNNNNCTT 2 cut(s) 488, 520
FaqI GGGAC 1 cut(s) 492
FatI CATG 5 cut(s) 48, 235, 474, 635, 868
FauI CCCGC 2 cut(s) 169, 204
FauNDI CATATG 1 cut(s) 348
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 6 cut(s) 77, 259, 317, 320, 404, 452
FokI GGATG 5 cut(s) 215, 474, 545, 559, 644
FriOI GRGCYC 1 cut(s) 685
Fsp4HI GCNGC 6 cut(s) 77, 259, 317, 320, 404, 452
FspBI CTAG 1 cut(s) 543
GlaI GCGC 2 cut(s) 69, 136
GluI GCNGC 6 cut(s) 77, 259, 317, 320, 404, 452
GsuI CTGGAG 1 cut(s) 330
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 2 cut(s) 269, 891
HapII CCGG 2 cut(s) 111, 147
HgaI GACGC 2 cut(s) 74, 465
HhaI GCGC 2 cut(s) 70, 137
Hin1I GRCGYC 2 cut(s) 135, 457
Hin1II CATG 5 cut(s) 52, 239, 478, 639, 872
Hin6I GCGC 2 cut(s) 68, 135
HinP1I GCGC 2 cut(s) 68, 135
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 5 cut(s) 39, 743, 827, 1028, 1035
HpaII CCGG 2 cut(s) 111, 147
HphI GGTGA 1 cut(s) 680
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 4 cut(s) 38, 420, 445, 687
Hpy188III TCNNGA 5 cut(s) 236, 860, 869, 920, 1032
Hpy8I GTNNAC 1 cut(s) 526
Hpy99I CGWCG 3 cut(s) 68, 134, 459
HpyAV CCTTC 2 cut(s) 134, 359
HpyCH4III ACNGT 2 cut(s) 298, 523
HpyCH4IV ACGT 1 cut(s) 802
HpyCH4V TGCA 7 cut(s) 52, 433, 466, 474, 608, 927, 940
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 76, 288, 1018
HpyF3I CTNAG 2 cut(s) 684, 819
HpySE526I ACGT 1 cut(s) 802
Hsp92I GRCGYC 2 cut(s) 135, 457
Hsp92II CATG 5 cut(s) 52, 239, 478, 639, 872
HspAI GCGC 2 cut(s) 68, 135
KasI GGCGCC 1 cut(s) 134
Kzo9I GATC 5 cut(s) 113, 143, 373, 415, 871
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 4 cut(s) 112, 288, 327, 590
Lsp1109I GCAGC 3 cut(s) 303, 390, 463
LweI GCATC 2 cut(s) 828, 1008
MaeI CTAG 1 cut(s) 543
MaeII ACGT 1 cut(s) 802
MaeIII GTNAC 1 cut(s) 517
MalI GATC 5 cut(s) 115, 145, 375, 417, 873
MbiI CCGCTC 3 cut(s) 30, 79, 322
MboI GATC 5 cut(s) 113, 143, 373, 415, 871
MboII GAAGA 8 cut(s) 73, 163, 178, 476, 584, 716, 724, 966
MfeI CAATTG 1 cut(s) 597
MflI RGATCY 2 cut(s) 143, 415
MhlI GDGCHC 1 cut(s) 685
MluCI AATT 3 cut(s) 53, 597, 896
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 4 cut(s) 48, 752, 821, 1029
MmeI TCCRAC 1 cut(s) 978
MnlI CCTC 9 cut(s) 34, 107, 188, 192, 272, 508, 581, 672, 691
Mph1103I ATGCAT 1 cut(s) 435
MseI TTAA 1 cut(s) 567
MspI CCGG 2 cut(s) 111, 147
MspR9I CCNGG 4 cut(s) 111, 148, 748, 893
MunI CAATTG 1 cut(s) 597
Mva1269I GAATGC 2 cut(s) 435, 1012
MvaI CCWGG 2 cut(s) 748, 893
MvnI CGCG 3 cut(s) 59, 68, 118
MwoI GCNNNNNNNGC 4 cut(s) 65, 76, 288, 1018
NarI GGCGCC 1 cut(s) 135
NciI CCSGG 2 cut(s) 111, 148
NcoI CCATGG 1 cut(s) 635
NdeI CATATG 1 cut(s) 348
NdeII GATC 5 cut(s) 113, 143, 373, 415, 871
NlaIII CATG 5 cut(s) 52, 239, 478, 639, 872
NlaIV GGNNCC 4 cut(s) 122, 136, 145, 633
NmeAIII GCCGAG 1 cut(s) 485
NsiI ATGCAT 1 cut(s) 435
NspI RCATGY 1 cut(s) 52
PaeI GCATGC 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 25
PagI TCATGA 2 cut(s) 235, 868
PciSI GCTCTTC 1 cut(s) 86
PctI GAATGC 2 cut(s) 435, 1012
PfeI GAWTC 1 cut(s) 1028
Pfl23II CGTACG 1 cut(s) 60
PfoI TCCNGGA 2 cut(s) 109, 146
PkrI GCNGC 6 cut(s) 78, 260, 318, 321, 405, 453
PleI GAGTC 4 cut(s) 47, 751, 821, 1029
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 4 cut(s) 47, 751, 821, 1029
Psp6I CCWGG 2 cut(s) 746, 891
PspGI CCWGG 2 cut(s) 746, 891
PspLI CGTACG 1 cut(s) 60
PspN4I GGNNCC 4 cut(s) 122, 136, 145, 633
PspPI GGNCC 1 cut(s) 1000
PspXI VCTCGAGB 1 cut(s) 25
PstI CTGCAG 1 cut(s) 942
PsuI RGATCY 2 cut(s) 143, 415
RsaI GTAC 2 cut(s) 62, 904
RsaNI GTAC 2 cut(s) 61, 903
SalI GTCGAC 1 cut(s) 524
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 6 cut(s) 77, 259, 317, 320, 404, 452
Sau3AI GATC 5 cut(s) 113, 143, 373, 415, 871
Sau96I GGNCC 1 cut(s) 1000
SchI GAGTC 4 cut(s) 48, 752, 821, 1029
ScrFI CCNGG 4 cut(s) 111, 148, 748, 893
SduI GDGCHC 1 cut(s) 685
SfaNI GCATC 2 cut(s) 828, 1008
SfcI CTRYAG 2 cut(s) 253, 938
SfoI GGCGCC 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 25
SinI GGWCC 1 cut(s) 1000
SlaI CTCGAG 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SphI GCATGC 1 cut(s) 52
Sse9I AATT 3 cut(s) 53, 597, 896
SsiI CCGC 9 cut(s) 5, 30, 74, 77, 118, 176, 211, 258, 320
SspDI GGCGCC 1 cut(s) 134
SspMI CTAG 1 cut(s) 543
StyD4I CCNGG 4 cut(s) 109, 146, 746, 891
StyI CCWWGG 2 cut(s) 325, 635
TaaI ACNGT 2 cut(s) 298, 523
TaiI ACGT 1 cut(s) 805
TaqI TCGA 5 cut(s) 26, 525, 741, 825, 1016
TasI AATT 3 cut(s) 53, 597, 896
TatI WGTACW 1 cut(s) 902
TauI GCSGC 3 cut(s) 79, 261, 322
TfiI GAWTC 1 cut(s) 1028
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 1 cut(s) 49
TseI GCWGC 3 cut(s) 316, 403, 451
TspDTI ATGAA 3 cut(s) 224, 476, 960
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 1000
XceI RCATGY 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 1 cut(s) 543
Zsp2I ATGCAT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.