Rh6DG298600

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003870
Physical Location & Seq
Reverse (-)
50022736 .. 50025939
3204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG298600.1

Sequence Viewer

Length: 627 bp
ATGGCGGAACAAGAAGCAGAGACCTCGAGCGGTATCAGAGTCAGTGGCATGCAATTCGCGTACGACGCGCAACCTCCGCTCTTCTACGACTTCAGCCTCAACATTGCTCCCGGATCACGGTGCCTTCTCGTCGGCGCCAACGGATCCGGGAAGACTACTCTGCTGAAGATTTTGGCGGGGAAGCAAATGGTGGGAGGGAGGGACGTGGTGCGGGTGTTGAATGGTTCGGCTTTTCATGACACTCATTTGGTCTGTAGCGGCGACTTGGCCTATTTGGGAGGCTCCTGGAGCAAAACTGTTGGCTGTGCTGGAGAGCTGCCCCTCCAAGGAGACTTCTCTGCTGAACATATGATATTTGGAGTGGAAGGAACTGATCCGGTTAGGAGAGAAAAGTTGATTGAGCTGCTTGATATAGATCTCAAGTGGCGAATGCATAAAGTATCTGATGGGCAGCGACGCCGAGTGCAAATCTGCATGGGACTTCTTCATCCTTTCAAGGTTCTCTTGCTTGATGAGGTAACAGTCGACTTGGATGTTGTTGCTAGGATGGACTTACTAGATTTCTTCAAGGAAGAATGTGAGCAGGTATGGCTTTGTATCATTTATCTCTTTTTGTTAAAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

208

Amino Acids

23.09

Weight (kDa)

5.37

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 30 - 174 1e-15 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 625
Acc36I ACCTGC 1 cut(s) 574
AccB1I GGYRCC 2 cut(s) 120, 134
AccBSI CCGCTC 2 cut(s) 30, 79
AccI GTMKAC 1 cut(s) 525
AccII CGCG 2 cut(s) 59, 68
AciI CCGC 6 cut(s) 5, 30, 77, 176, 211, 258
AclWI GGATC 4 cut(s) 121, 138, 151, 368
AcuI CTGAAG 2 cut(s) 76, 185
AcyI GRCGYC 2 cut(s) 135, 457
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 117, 326
AgsI TTSAA 3 cut(s) 220, 496, 568
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 2 cut(s) 316, 403
AluI AGCT 2 cut(s) 316, 403
Alw26I GTCTC 2 cut(s) 14, 324
AlwI GGATC 4 cut(s) 121, 138, 151, 368
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 3 cut(s) 316, 403, 451
AspLEI GCGC 2 cut(s) 70, 137
AsuC2I CCSGG 2 cut(s) 111, 148
AvaI CYCGRG 1 cut(s) 25
BamHI GGATCC 1 cut(s) 143
BanI GGYRCC 2 cut(s) 120, 134
BbsI GAAGAC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 303, 390, 463
BccI CCATC 2 cut(s) 440, 541
BcgI CGANNNNNNTGC 4 cut(s) 6, 37, 40, 71
BciT130I CCWGG 1 cut(s) 286
BcnI CCSGG 2 cut(s) 111, 148
BcoDI GTCTC 2 cut(s) 14, 324
BfaI CTAG 2 cut(s) 543, 557
BfmI CTRYAG 1 cut(s) 253
BfoI RGCGCY 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 574
BglII AGATCT 1 cut(s) 415
BisI GCNGC 4 cut(s) 259, 317, 404, 452
BlsI GCNGC 4 cut(s) 260, 318, 405, 453
Bme1390I CCNGG 3 cut(s) 111, 148, 286
BmeT110I CYCGRG 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 205
BmiI GGNNCC 4 cut(s) 122, 136, 145, 283
BmrFI CCNGG 3 cut(s) 111, 148, 286
BpiI GAAGAC 1 cut(s) 158
BpmI CTGGAG 2 cut(s) 307, 330
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 2 cut(s) 111, 148
BsaBI GATNNNNATC 1 cut(s) 414
BsaHI GRCGYC 2 cut(s) 135, 457
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 325
BsaWI WCCGGW 1 cut(s) 376
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 326
Bse3DI GCAATG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 325
BseGI GGATG 3 cut(s) 487, 538, 552
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 117, 326
BseMI GCAATG 1 cut(s) 102
BseXI GCAGC 3 cut(s) 303, 390, 463
Bsh1236I CGCG 2 cut(s) 59, 68
BshFI GGCC 1 cut(s) 269
BshNI GGYRCC 2 cut(s) 120, 134
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 3 cut(s) 111, 147, 377
BsiWI CGTACG 1 cut(s) 60
BslFI GGGAC 2 cut(s) 215, 492
BslI CCNNNNNNNGG 2 cut(s) 117, 326
BsmAI GTCTC 2 cut(s) 14, 324
BsmFI GGGAC 2 cut(s) 215, 492
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 1 cut(s) 269
Bso31I GGTCTC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 25
Bsp143I GATC 4 cut(s) 113, 143, 373, 415
BspACI CCGC 6 cut(s) 5, 30, 77, 176, 211, 258
BspANI GGCC 1 cut(s) 269
BspFNI CGCG 2 cut(s) 59, 68
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 4 cut(s) 122, 136, 145, 283
BspMI ACCTGC 1 cut(s) 574
BspPI GGATC 4 cut(s) 121, 138, 151, 368
BspQI GCTCTTC 1 cut(s) 86
BspT107I GGYRCC 2 cut(s) 120, 134
BspTNI GGTCTC 1 cut(s) 14
BsrBI CCGCTC 2 cut(s) 30, 79
BsrDI GCAATG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 4 cut(s) 113, 143, 373, 415
BssNI GRCGYC 2 cut(s) 135, 457
BssT1I CCWWGG 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 120, 298, 523
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 2 cut(s) 135, 457
BstC8I GCNNGC 1 cut(s) 50
BstF5I GGATG 3 cut(s) 487, 538, 552
BstFNI CGCG 2 cut(s) 59, 68
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 70, 137
BstKTI GATC 4 cut(s) 116, 146, 376, 418
BstMAI GTCTC 2 cut(s) 14, 324
BstMBI GATC 4 cut(s) 113, 143, 373, 415
BstMWI GCNNNNNNNGC 4 cut(s) 65, 76, 288, 589
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 3 cut(s) 109, 146, 284
BstSFI CTRYAG 1 cut(s) 253
BstUI CGCG 2 cut(s) 59, 68
BstV1I GCAGC 3 cut(s) 303, 390, 463
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 2 cut(s) 143, 415
BstYI RGATCY 2 cut(s) 143, 415
BsuRI GGCC 1 cut(s) 269
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 3 cut(s) 487, 538, 552
BtsIMutI CAGTG 1 cut(s) 49
BveI ACCTGC 1 cut(s) 574
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 1 cut(s) 235
CfoI GCGC 2 cut(s) 70, 137
CseI GACGC 2 cut(s) 74, 465
Csp6I GTAC 1 cut(s) 61
CviAII CATG 3 cut(s) 49, 236, 475
CviJI RGCY 8 cut(s) 96, 230, 269, 282, 303, 316, 403, 592
CviKI_1 RGCY 8 cut(s) 96, 230, 269, 282, 303, 316, 403, 592
CviQI GTAC 1 cut(s) 61
DinI GGCGCC 1 cut(s) 136
DpnI GATC 4 cut(s) 115, 145, 375, 417
DpnII GATC 4 cut(s) 113, 143, 373, 415
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 76, 185
Eco88I CYCGRG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 435
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 3 cut(s) 52, 239, 478
FaiI YATR 9 cut(s) 50, 237, 348, 350, 413, 435, 476, 589, 625
FalI AAGNNNNNCTT 2 cut(s) 488, 520
FaqI GGGAC 2 cut(s) 215, 492
FatI CATG 3 cut(s) 48, 235, 474
FauI CCCGC 2 cut(s) 169, 204
FauNDI CATATG 1 cut(s) 348
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 4 cut(s) 259, 317, 404, 452
FokI GGATG 3 cut(s) 474, 545, 559
Fsp4HI GCNGC 4 cut(s) 259, 317, 404, 452
FspBI CTAG 2 cut(s) 543, 557
GlaI GCGC 2 cut(s) 69, 136
GluI GCNGC 4 cut(s) 259, 317, 404, 452
GsuI CTGGAG 2 cut(s) 307, 330
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 269
HapII CCGG 3 cut(s) 111, 147, 377
HgaI GACGC 2 cut(s) 74, 465
HhaI GCGC 2 cut(s) 70, 137
Hin1I GRCGYC 2 cut(s) 135, 457
Hin1II CATG 3 cut(s) 52, 239, 478
Hin6I GCGC 2 cut(s) 68, 135
HinP1I GCGC 2 cut(s) 68, 135
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 1 cut(s) 39
HpaII CCGG 3 cut(s) 111, 147, 377
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 2 cut(s) 38, 445
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 526
Hpy99I CGWCG 3 cut(s) 68, 134, 459
HpyAV CCTTC 2 cut(s) 134, 359
HpyCH4III ACNGT 3 cut(s) 120, 298, 523
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 4 cut(s) 52, 433, 466, 474
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 76, 288, 589
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 2 cut(s) 135, 457
Hsp92II CATG 3 cut(s) 52, 239, 478
HspAI GCGC 2 cut(s) 68, 135
KasI GGCGCC 1 cut(s) 134
Kzo9I GATC 4 cut(s) 113, 143, 373, 415
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 3 cut(s) 112, 287, 288
LpnPI CCDG 7 cut(s) 124, 160, 271, 294, 298, 390, 569
Lsp1109I GCAGC 3 cut(s) 303, 390, 463
MaeI CTAG 2 cut(s) 543, 557
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 517
MalI GATC 4 cut(s) 115, 145, 375, 417
MbiI CCGCTC 2 cut(s) 30, 79
MboI GATC 4 cut(s) 113, 143, 373, 415
MboII GAAGA 6 cut(s) 73, 163, 178, 476, 556, 584
MflI RGATCY 2 cut(s) 143, 415
MluCI AATT 1 cut(s) 53
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 8 cut(s) 34, 84, 107, 188, 192, 272, 332, 508
Mph1103I ATGCAT 1 cut(s) 435
MseI TTAA 1 cut(s) 617
MspI CCGG 3 cut(s) 111, 147, 377
MspR9I CCNGG 3 cut(s) 111, 148, 286
Mva1269I GAATGC 1 cut(s) 435
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 2 cut(s) 59, 68
MwoI GCNNNNNNNGC 4 cut(s) 65, 76, 288, 589
NarI GGCGCC 1 cut(s) 135
NciI CCSGG 2 cut(s) 111, 148
NdeI CATATG 1 cut(s) 348
NdeII GATC 4 cut(s) 113, 143, 373, 415
NlaIII CATG 3 cut(s) 52, 239, 478
NlaIV GGNNCC 4 cut(s) 122, 136, 145, 283
NmeAIII GCCGAG 1 cut(s) 485
NsiI ATGCAT 1 cut(s) 435
NspI RCATGY 1 cut(s) 52
PaeI GCATGC 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 25
PagI TCATGA 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 86
PctI GAATGC 1 cut(s) 435
Pfl23II CGTACG 1 cut(s) 60
PfoI TCCNGGA 3 cut(s) 109, 146, 284
PkrI GCNGC 4 cut(s) 260, 318, 405, 453
PleI GAGTC 1 cut(s) 47
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 47
PsiI TTATAA 1 cut(s) 625
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspLI CGTACG 1 cut(s) 60
PspN4I GGNNCC 4 cut(s) 122, 136, 145, 283
PspXI VCTCGAGB 1 cut(s) 25
PsuI RGATCY 2 cut(s) 143, 415
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SalI GTCGAC 1 cut(s) 524
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 617
SatI GCNGC 4 cut(s) 259, 317, 404, 452
Sau3AI GATC 4 cut(s) 113, 143, 373, 415
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 3 cut(s) 111, 148, 286
SetI ASST 8 cut(s) 26, 76, 207, 318, 405, 501, 519, 588
SfcI CTRYAG 1 cut(s) 253
SfoI GGCGCC 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 25
SlaI CTCGAG 1 cut(s) 25
SmlI CTYRAG 2 cut(s) 25, 419
SmoI CTYRAG 2 cut(s) 25, 419
SphI GCATGC 1 cut(s) 52
Sse9I AATT 1 cut(s) 53
SsiI CCGC 6 cut(s) 5, 30, 77, 176, 211, 258
SspDI GGCGCC 1 cut(s) 134
SspMI CTAG 2 cut(s) 543, 557
StyD4I CCNGG 3 cut(s) 109, 146, 284
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 3 cut(s) 120, 298, 523
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 26, 525
TasI AATT 1 cut(s) 53
TauI GCSGC 1 cut(s) 261
Tru1I TTAA 1 cut(s) 617
Tru9I TTAA 1 cut(s) 617
TscAI CASTG 1 cut(s) 49
TseI GCWGC 3 cut(s) 316, 403, 451
TspDTI ATGAA 2 cut(s) 224, 476
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 1 cut(s) 49
XceI RCATGY 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 2 cut(s) 543, 557
Zsp2I ATGCAT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.