Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Reverse (-)

33405545 .. 33406763

Gene Structure 1219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G023630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGATATTTGGAGTGGAAGGAACTGATCCGGTTAGGAGGGAAAAGTTGATTGAGCTGCTTGATATAGATCTCAAGTGGCGAATGCATAAAGTATCTGATGGGCAGCGACGCCGAGTGCAAATCTGCATGGGACTTCTTCATCCTTTCAAGGTTCTCTTGCTTGATGAGGTAACAGTCGACTTGGATGTTGTTGCTAGGATGGACTTATTAGATTTCTTCAAGGAAGAATGTGAGCAGAGAGGAGCTACAATTGTATACGCAACTCATATCTTTGATGGCTTGGAAACATGGGCAACCCATTTAGCTTACATCCAAGATGGTGAGCTAAAGAGAGCTCAGAAGTTATTGGAGGTTGAAGAGTTGAAGAGTTCAGTCAATCTGCTCTCTGTTGTCGAGTCCTGGCTTCGTGCTGAAACCAAACAGGAGAAAAAGAAACCCAAAAATCCTGCCCAAACGTCATCTCCTTTTGGTATGTCGTCAAGACACATGGCGTATTACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

167

Amino Acids

19.39

Weight (kDa)

6.53

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_21	PF13304	25 - 89	3e-07	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	177, 255
AciI	CCGC	1 cut(s)	499
AclWI	GGATC	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	109
AgsI	TTSAA	4 cut(s)	148, 220, 356, 364
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	5 cut(s)	55, 245, 305, 325, 335
AluI	AGCT	5 cut(s)	55, 245, 305, 325, 335
Alw21I	GWGCWC	1 cut(s)	337
AlwI	GGATC	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	55, 103
AsuHPI	GGTGA	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	42, 115
BccI	CCATC	4 cut(s)	92, 193, 269, 311
BciT130I	CCWGG	1 cut(s)	400
BfaI	CTAG	1 cut(s)	195
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	2 cut(s)	56, 104
BlsI	GCNGC	2 cut(s)	57, 105
Bme1390I	CCNGG	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	400
BpuEI	CTTGAG	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	400
BseGI	GGATG	4 cut(s)	139, 190, 204, 309
BseJI	GATNNNNATC	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	42, 115
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	25, 67
BspACI	CCGC	1 cut(s)	499
BspCNI	CTCAG	1 cut(s)	349
BspPI	GGATC	1 cut(s)	20
BssMI	GATC	2 cut(s)	25, 67
BssNAI	GTATAC	1 cut(s)	256
BssNI	GRCGYC	1 cut(s)	109
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	2 cut(s)	351, 359
BstACI	GRCGYC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	4 cut(s)	139, 190, 204, 309
BstKTI	GATC	2 cut(s)	28, 70
BstMBI	GATC	2 cut(s)	25, 67
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	398
BstV1I	GCAGC	2 cut(s)	42, 115
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BstZ17I	GTATAC	1 cut(s)	256
BtsCI	GGATG	4 cut(s)	139, 190, 204, 309
CseI	GACGC	1 cut(s)	117
CviAII	CATG	3 cut(s)	127, 288, 487
CviJI	RGCY	7 cut(s)	55, 245, 279, 305, 325, 335, 403
CviKI_1	RGCY	7 cut(s)	55, 245, 279, 305, 325, 335, 403
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	2 cut(s)	27, 69
DpnII	GATC	2 cut(s)	25, 67
Eam1104I	CTCTTC	2 cut(s)	351, 359
EarI	CTCTTC	2 cut(s)	351, 359
Ecl136II	GAGCTC	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	398
EcoT22I	ATGCAT	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	337
FaeI	CATG	3 cut(s)	130, 291, 490
FaiI	YATR	8 cut(s)	65, 87, 128, 256, 267, 289, 473, 488
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	3 cut(s)	126, 287, 486
FblI	GTMKAC	2 cut(s)	177, 255
Fnu4HI	GCNGC	2 cut(s)	56, 104
FokI	GGATG	4 cut(s)	126, 197, 211, 296
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	2 cut(s)	56, 104
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	2 cut(s)	56, 104
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	130, 291, 490
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	178, 256
Hpy188I	TCNGA	2 cut(s)	97, 339
Hpy188III	TCNNGA	1 cut(s)	480
Hpy8I	GTNNAC	2 cut(s)	178, 256
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	3 cut(s)	85, 118, 126
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	455
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	3 cut(s)	130, 291, 490
Kzo9I	GATC	2 cut(s)	25, 67
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	5 cut(s)	42, 385, 407, 412, 459
Lsp1109I	GCAGC	2 cut(s)	42, 115
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	27, 69
MboI	GATC	2 cut(s)	25, 67
MboII	GAAGA	5 cut(s)	128, 208, 236, 368, 376
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	404
MnlI	CCTC	4 cut(s)	30, 160, 233, 343
Mph1103I	ATGCAT	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	501
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	400
MunI	CAATTG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	400
NdeII	GATC	2 cut(s)	25, 67
NlaIII	CATG	3 cut(s)	130, 291, 490
NmeAIII	GCCGAG	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	87
PctI	GAATGC	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	57, 105
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	337
SalI	GTCGAC	1 cut(s)	176
SatI	GCNGC	2 cut(s)	56, 104
Sau3AI	GATC	2 cut(s)	25, 67
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	9 cut(s)	57, 153, 171, 247, 307, 327, 337, 354, 458
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	1 cut(s)	499
SspMI	CTAG	1 cut(s)	195
SstI	GAGCTC	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	2 cut(s)	177, 393
TasI	AATT	1 cut(s)	249
TseI	GCWGC	2 cut(s)	55, 103
TspDTI	ATGAA	1 cut(s)	128
XmiI	GTMKAC	2 cut(s)	177, 255
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.