Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Reverse (-)

14533969 .. 14539591

Gene Structure 5623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCCATGGAGATGGTATCGACTTTAGGAGAGTCGAGGTCAAATTGCAGACTAAGAAATGGTGATTTTCTAAGAAAAGTTGTCCTCTCAGTCCTCTCTCGACACTCTCAGTCCTCCGTCTCTCAATTCTCTCTCACAAACCCTAAAGCGGCCGATTTGGACCTCTCTCTCGCAGACAAAAGTTTGAAGCCTGAAGAGAGCAAAGCTAAAGCAGTCGTAAAAGGGAGAGTAGTGAAGGAGAAGAGGTTTCCTATCATTAAAGGCATCACTCCCCAGTCCAAAGTTGACTCTTTTTACCAATCCCACACCGAAAAGAATTATATGAGTGCTGCATGTTTCATTCCACGCTTGGGGTACATCCTGCACATTATAGAAGCTCCACCTATTGACTTTATAATTTTGTCTTTGGACTCTGGTAGGCTAAAATGTGGTAGATTTTCTTTTGGCATATTAAAAAGTGGAAGCATTCTCATTTTCTTCCAGGTTCTCTTGCTTGATGAGGTAACAGTCGACTTGGATGTTGTTGCTAGGATGGACTTATTAGATTTCTTCAAGGAAGAATGTGAGCAGAGAGGAGCTACAATTGTATACGCAACTCATATCTTTGATGGCTTGGAAACATGGGCAACCCATTTAGCTTACATCCAAGATGGTGAGCTAAAGAGAGCTCAGAAGTTATTGGAGGTTGAAGAGTTGAAGAGTTCAGTCAATCTGGTGTCTGTTGTCGAGTCCTGGCTTCGTGCTGAAACCAAGCAGGAGAAAAAGAAACCCAAAAATCCTGCCCAAACGTCATCTCCTTTTGGTGATGAGTTCCCTTGTAGATCAAGACGGATTGATACTCTCATATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

283

Amino Acids

31.85

Weight (kDa)

8.7

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
AccI	GTMKAC	2 cut(s)	510, 588
AciI	CCGC	1 cut(s)	149
AcoI	YGGCCR	2 cut(s)	3, 150
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	2 cut(s)	148, 350
AgsI	TTSAA	4 cut(s)	187, 553, 689, 697
AjnI	CCWGG	2 cut(s)	480, 731
AluBI	AGCT	6 cut(s)	206, 377, 578, 638, 658, 668
AluI	AGCT	6 cut(s)	206, 377, 578, 638, 658, 668
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	1 cut(s)	124
AoxI	GGCC	2 cut(s)	3, 150
ApeKI	GCWGC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	3 cut(s)	74, 665, 815
AvaII	GGWCC	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	4 cut(s)	7, 526, 602, 644
BciT130I	CCWGG	2 cut(s)	482, 733
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	528
BisI	GCNGC	2 cut(s)	150, 330
BlsI	GCNGC	2 cut(s)	151, 331
Bme1390I	CCNGG	2 cut(s)	482, 733
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmrFI	CCNGG	2 cut(s)	482, 733
BmrI	ACTGGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	6
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 778, 808
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 350
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	2 cut(s)	482, 733
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	4 cut(s)	357, 523, 537, 642
BseLI	CCNNNNNNNGG	2 cut(s)	148, 350
BseMII	CTCAG	3 cut(s)	102, 122, 683
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	588
BseX3I	CGGCCG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	347
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	5, 152
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	670
BslI	CCNNNNNNNGG	2 cut(s)	148, 350
BsmAI	GTCTC	1 cut(s)	124
BsmBI	CGTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	5, 152
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	1 cut(s)	821
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	2 cut(s)	5, 152
BspCNI	CTCAG	3 cut(s)	101, 121, 682
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	821
BssNAI	GTATAC	1 cut(s)	589
BssT1I	CCWWGG	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	589
Bst2UI	CCWGG	2 cut(s)	482, 733
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	4 cut(s)	189, 236, 684, 692
BstDEI	CTNAG	5 cut(s)	53, 71, 88, 108, 669
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	4 cut(s)	357, 523, 537, 642
BstKTI	GATC	1 cut(s)	824
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	821
BstMCI	CGRYCG	1 cut(s)	153
BstNI	CCWGG	2 cut(s)	482, 733
BstNSI	RCATGY	1 cut(s)	336
BstSCI	CCNGG	2 cut(s)	480, 731
BstV1I	GCAGC	1 cut(s)	316
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstZ17I	GTATAC	1 cut(s)	589
BstZI	CGGCCG	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	5, 152
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	4 cut(s)	357, 523, 537, 642
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	3 cut(s)	7, 333, 621
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	5 cut(s)	53, 71, 88, 108, 669
DpnI	GATC	1 cut(s)	823
DpnII	GATC	1 cut(s)	821
EaeI	YGGCCR	2 cut(s)	3, 150
EagI	CGGCCG	1 cut(s)	150
Eam1104I	CTCTTC	4 cut(s)	189, 236, 684, 692
EarI	CTCTTC	4 cut(s)	189, 236, 684, 692
Ecl136II	GAGCTC	1 cut(s)	668
EclXI	CGGCCG	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	668
Eco57I	CTGAAG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	668
EcoRII	CCWGG	2 cut(s)	480, 731
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	3 cut(s)	10, 336, 624
FatI	CATG	3 cut(s)	6, 332, 620
FblI	GTMKAC	2 cut(s)	510, 588
Fnu4HI	GCNGC	2 cut(s)	150, 330
FokI	GGATG	4 cut(s)	344, 530, 544, 629
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	2 cut(s)	150, 330
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	2 cut(s)	150, 330
HaeIII	GGCC	2 cut(s)	5, 152
Hin1II	CATG	3 cut(s)	10, 336, 624
HincII	GTYRAC	2 cut(s)	286, 511
HindII	GTYRAC	2 cut(s)	286, 511
HinfI	GANTC	4 cut(s)	32, 287, 410, 728
HphI	GGTGA	3 cut(s)	74, 665, 815
Hpy166II	GTNNAC	3 cut(s)	286, 511, 589
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	2 cut(s)	99, 825
Hpy8I	GTNNAC	3 cut(s)	286, 511, 589
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	1 cut(s)	788
HpyCH4V	TGCA	3 cut(s)	48, 332, 364
HpyF3I	CTNAG	5 cut(s)	53, 71, 88, 108, 669
HpySE526I	ACGT	1 cut(s)	788
Hsp92II	CATG	3 cut(s)	10, 336, 624
Kzo9I	GATC	1 cut(s)	821
LmnI	GCTCC	2 cut(s)	382, 575
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	788
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	1 cut(s)	823
MboI	GATC	1 cut(s)	821
MboII	GAAGA	7 cut(s)	206, 253, 469, 541, 569, 701, 709
MfeI	CAATTG	1 cut(s)	582
MhlI	GDGCHC	1 cut(s)	670
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	43, 125, 316, 396, 582
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	41, 281, 404, 737
MnlI	CCTC	9 cut(s)	30, 95, 104, 124, 173, 237, 493, 566, 676
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	258, 452, 850
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	482, 733
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	2 cut(s)	482, 733
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	1 cut(s)	821
NlaIII	CATG	3 cut(s)	10, 336, 624
NspI	RCATGY	1 cut(s)	336
PctI	GAATGC	1 cut(s)	465
PkrI	GCNGC	2 cut(s)	151, 331
PleI	GAGTC	4 cut(s)	40, 281, 404, 736
PpsI	GAGTC	4 cut(s)	40, 281, 404, 736
PsiI	TTATAA	1 cut(s)	395
Psp124BI	GAGCTC	1 cut(s)	670
Psp6I	CCWGG	2 cut(s)	480, 731
PspGI	CCWGG	2 cut(s)	480, 731
PspPI	GGNCC	1 cut(s)	160
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	670
SalI	GTCGAC	1 cut(s)	509
SaqAI	TTAA	3 cut(s)	258, 452, 850
SatI	GCNGC	2 cut(s)	150, 330
Sau3AI	GATC	1 cut(s)	821
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	4 cut(s)	41, 281, 404, 737
ScrFI	CCNGG	2 cut(s)	482, 733
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	1 cut(s)	273
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	5 cut(s)	43, 125, 316, 396, 582
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	1 cut(s)	528
SstI	GAGCTC	1 cut(s)	670
StyD4I	CCNGG	2 cut(s)	480, 731
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	1 cut(s)	791
TaqI	TCGA	5 cut(s)	20, 35, 100, 510, 726
TasI	AATT	5 cut(s)	43, 125, 316, 396, 582
TauI	GCSGC	1 cut(s)	152
Tru1I	TTAA	3 cut(s)	258, 452, 850
Tru9I	TTAA	3 cut(s)	258, 452, 850
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	328
TspGWI	ACGGA	2 cut(s)	106, 844
VpaK11BI	GGWCC	1 cut(s)	160
XceI	RCATGY	1 cut(s)	336
XmiI	GTMKAC	2 cut(s)	510, 588
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.