Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003667.1

Orthogroup ID

OG0003870

Physical Location & Seq

Genomic Coordinates Forward (+)

21039 .. 23312

Gene Structure 2274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003667.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgaatgaatcacagaaagatatcctagtgtggaaaaatatccttgtgtggaaagatctccttgccaagcctcatgagtggtgggacgtcaggtcgaaagagggttccccaaaggctgcagcctttgagcgtaagagtaatggcgaattacgtatgattgatgattcaactcctgaatggatccaacataagttagattccttgacatttgatcagaaacctaattcacatagttccgaaatggaaggaactgatccggttaggagagaaaagttgattgagctgcttgatatagatctcaagtggcgaatgcataaagtatctgatgggcagcgacgccgagtgcaaatctgcatgggacttcttcatcctttcaaggttctcttgcttgatgaggtaacagtcgacttggatgttgttgctaggatggacttattagatttcttcaaggaagaatgtgagcagagaggagctacaattgtatacgcaactcatatctttgatggcttggaaacatgggcaacccatttagcttacatccaagatggtgagctaaagagagctcagaagttattggaggttgaagagttgaagagttcagtcaatctgctatctgttgtcgagtcctggcttcgtgctgaaaccatgcaggagaaaaagaaacccaaaaatcctgcccaaacgtcatctccttttggtatgtcgtcaagacacatggcgtattaccgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

243

Amino Acids

28.36

Weight (kDa)

6.1

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03905 AT1G03905 AT1G03905 AT1G03905 AT5G44110 AT5G44110 AT5G44110
fragaria_vesca	FvH4_2g21190 FvH4_2g21190
malus_domestica	MD05G1194500.v1.1
prunus_persica	Prupe.8G221200_v2.0.a1
pyrus_communis	pycom05g18180
rosa_chinensis	RchiOBHm_Chr5g0049941 RchiOBHm_Chr6g0287691
rosa_laevigata	RLG00000012473
rosa_multiflora	Rmu_sc0003335.1_g000001 Rmu_sc0003667.1_g000009 Rmu_sc0003877.1_g000018 Rmu_ssc0000100.1_g000025
rosa_roxburghii	Rroxscaffold_5G00344430 Rroxscaffold_7G00181070 Rroxscaffold_7G00181290
rosa_rugosa	Rorug06G0190700
rosa_samantha	Rh3DG342300 Rh6AG301200 Rh6BG306900 Rh6CG302600 Rh6CG315100 Rh6DG298600
rosa_wichuraiana	Rw0G000340 Rw2G014690 Rw2G034360 Rw5G023630 Rw6G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccI	GTMKAC	2 cut(s)	405, 483
AciI	CCGC	1 cut(s)	727
AclWI	GGATC	3 cut(s)	175, 188, 248
AcyI	GRCGYC	2 cut(s)	87, 337
AgsI	TTSAA	5 cut(s)	168, 376, 448, 584, 592
AhdI	GACNNNNNGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	626
AluBI	AGCT	5 cut(s)	283, 473, 533, 553, 563
AluI	AGCT	5 cut(s)	283, 473, 533, 553, 563
Alw21I	GWGCWC	1 cut(s)	565
AlwI	GGATC	3 cut(s)	175, 188, 248
ApeKI	GCWGC	4 cut(s)	116, 119, 283, 331
AsuHPI	GGTGA	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	565
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	4 cut(s)	103, 131, 270, 343
BccI	CCATC	4 cut(s)	320, 421, 497, 539
BciT130I	CCWGG	1 cut(s)	628
BclI	TGATCA	1 cut(s)	211
BfaI	CTAG	2 cut(s)	26, 423
BfmI	CTRYAG	1 cut(s)	117
BglII	AGATCT	2 cut(s)	55, 295
BisI	GCNGC	4 cut(s)	117, 120, 284, 332
BlsI	GCNGC	4 cut(s)	118, 121, 285, 333
Bme1390I	CCNGG	1 cut(s)	628
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmiI	GGNNCC	2 cut(s)	106, 182
BmrFI	CCNGG	1 cut(s)	628
BpuEI	CTTGAG	1 cut(s)	284
BsaAI	YACGTR	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	294
BsaHI	GRCGYC	2 cut(s)	87, 337
BsaWI	WCCGGW	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	673, 703
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	628
BseGI	GGATG	4 cut(s)	367, 418, 432, 537
BseJI	GATNNNNATC	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	578
BseRI	GAGGAG	1 cut(s)	483
BseXI	GCAGC	4 cut(s)	103, 131, 270, 343
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	2 cut(s)	98, 372
BsmFI	GGGAC	2 cut(s)	98, 372
BsmI	GAATGC	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	5 cut(s)	55, 180, 211, 253, 295
BspACI	CCGC	1 cut(s)	727
BspCNI	CTCAG	1 cut(s)	577
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	106, 182
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	3 cut(s)	175, 188, 248
BssMI	GATC	5 cut(s)	55, 180, 211, 253, 295
BssNAI	GTATAC	1 cut(s)	484
BssNI	GRCGYC	2 cut(s)	87, 337
Bst1107I	GTATAC	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	628
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	2 cut(s)	579, 587
BstACI	GRCGYC	2 cut(s)	87, 337
BstBAI	YACGTR	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	564
BstF5I	GGATG	4 cut(s)	367, 418, 432, 537
BstKTI	GATC	5 cut(s)	58, 183, 214, 256, 298
BstMBI	GATC	5 cut(s)	55, 180, 211, 253, 295
BstNI	CCWGG	1 cut(s)	628
BstSCI	CCNGG	1 cut(s)	626
BstSFI	CTRYAG	1 cut(s)	117
BstSNI	TACGTA	1 cut(s)	152
BstV1I	GCAGC	4 cut(s)	103, 131, 270, 343
BstX2I	RGATCY	3 cut(s)	55, 180, 295
BstYI	RGATCY	3 cut(s)	55, 180, 295
BstZ17I	GTATAC	1 cut(s)	484
BtsCI	GGATG	4 cut(s)	367, 418, 432, 537
CciI	TCATGA	1 cut(s)	73
CseI	GACGC	1 cut(s)	345
CviAII	CATG	5 cut(s)	74, 355, 516, 646, 715
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	5 cut(s)	57, 182, 213, 255, 297
DpnII	GATC	5 cut(s)	55, 180, 211, 253, 295
DriI	GACNNNNNGTC	1 cut(s)	91
Eam1104I	CTCTTC	2 cut(s)	579, 587
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	2 cut(s)	579, 587
Ecl136II	GAGCTC	1 cut(s)	563
Eco105I	TACGTA	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	626
EcoRV	GATATC	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	565
FaeI	CATG	5 cut(s)	77, 358, 519, 649, 718
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 368, 400
FaqI	GGGAC	2 cut(s)	98, 372
FatI	CATG	5 cut(s)	73, 354, 515, 645, 714
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	2 cut(s)	405, 483
Fnu4HI	GCNGC	4 cut(s)	117, 120, 284, 332
FokI	GGATG	4 cut(s)	354, 425, 439, 524
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	4 cut(s)	117, 120, 284, 332
FspBI	CTAG	2 cut(s)	26, 423
GluI	GCNGC	4 cut(s)	117, 120, 284, 332
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	345
Hin1I	GRCGYC	2 cut(s)	87, 337
Hin1II	CATG	5 cut(s)	77, 358, 519, 649, 718
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	4 cut(s)	8, 164, 197, 623
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	2 cut(s)	406, 484
Hpy188I	TCNGA	4 cut(s)	216, 238, 325, 567
Hpy188III	TCNNGA	3 cut(s)	74, 173, 708
Hpy8I	GTNNAC	2 cut(s)	406, 484
Hpy99I	CGWCG	1 cut(s)	339
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	3 cut(s)	87, 151, 683
HpyCH4V	TGCA	5 cut(s)	119, 313, 346, 354, 649
HpyF3I	CTNAG	1 cut(s)	564
HpySE526I	ACGT	3 cut(s)	87, 151, 683
Hsp92I	GRCGYC	2 cut(s)	87, 337
Hsp92II	CATG	5 cut(s)	77, 358, 519, 649, 718
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	5 cut(s)	55, 180, 211, 253, 295
LmnI	GCTCC	1 cut(s)	470
LpnPI	CCDG	7 cut(s)	76, 186, 270, 613, 635, 640, 687
Lsp1109I	GCAGC	4 cut(s)	103, 131, 270, 343
MaeI	CTAG	2 cut(s)	26, 423
MaeII	ACGT	3 cut(s)	87, 151, 683
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	5 cut(s)	57, 182, 213, 255, 297
MboI	GATC	5 cut(s)	55, 180, 211, 253, 295
MboII	GAAGA	5 cut(s)	356, 436, 464, 596, 604
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	3 cut(s)	55, 180, 295
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	3 cut(s)	146, 223, 477
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	5 cut(s)	81, 94, 388, 461, 571
Mph1103I	ATGCAT	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	729
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	628
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	628
NdeII	GATC	5 cut(s)	55, 180, 211, 253, 295
NlaIII	CATG	5 cut(s)	77, 358, 519, 649, 718
NlaIV	GGNNCC	2 cut(s)	106, 182
NmeAIII	GCCGAG	1 cut(s)	365
NsiI	ATGCAT	1 cut(s)	315
PagI	TCATGA	1 cut(s)	73
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	3 cut(s)	8, 164, 197
PkrI	GCNGC	4 cut(s)	118, 121, 285, 333
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
Ppu21I	YACGTR	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	626
PspN4I	GGNNCC	2 cut(s)	106, 182
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	3 cut(s)	55, 180, 295
SacI	GAGCTC	1 cut(s)	565
SalI	GTCGAC	1 cut(s)	404
SatI	GCNGC	4 cut(s)	117, 120, 284, 332
Sau3AI	GATC	5 cut(s)	55, 180, 211, 253, 295
SchI	GAGTC	1 cut(s)	632
ScrFI	CCNGG	1 cut(s)	628
SduI	GDGCHC	1 cut(s)	565
SfcI	CTRYAG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SnaBI	TACGTA	1 cut(s)	152
Sse9I	AATT	3 cut(s)	146, 223, 477
SsiI	CCGC	1 cut(s)	727
SspMI	CTAG	2 cut(s)	26, 423
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	1 cut(s)	626
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	3 cut(s)	90, 154, 686
TaqI	TCGA	3 cut(s)	95, 405, 621
TasI	AATT	3 cut(s)	146, 223, 477
TfiI	GAWTC	3 cut(s)	8, 164, 197
TseI	GCWGC	4 cut(s)	116, 119, 283, 331
TspDTI	ATGAA	3 cut(s)	17, 21, 356
XmiI	GTMKAC	2 cut(s)	405, 483
XspI	CTAG	2 cut(s)	26, 423
ZraI	GACGTC	1 cut(s)	88
Zsp2I	ATGCAT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.