Rh6AG301200

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003870
Physical Location & Seq
Reverse (-)
49990738 .. 49994222
3485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG301200.1

Sequence Viewer

Length: 546 bp
ATGGCGGAACAAGAAGCAGAGACCTCGAGCGGTATCAGAGTCAGTGGCATGCAATTCGCGTACGACGCGCAACCTCCGCTCTTCTACGACTTCAGCCTCAACATTGCTCCCGGATCGCGGTGCCTTCTCGTCGGCGCCAACGGATCCGGGAAGACTACTCTGCTGAAGATTTTGGCGGGGAAGCAAATGGTGGGAGGGAGGGACGTGGTGCGGGTGTTGAATGGTTCGGCTTTTCATGACACTCATTTGGTCTGTAGCGGCGACTTGGCCTATTTGGGAGGCTCCTGGAGCAAAACTGTTGGCTGTGCTAAGAAACTGTCTTCAAAACTTGAAAGCAAAAATAAGACCGATACAGTCTTGGAATCACAATATCGTAACGCTGAAGATACATTGAACAAAAACACTTGGAGGTGCTTTGAAAAACAAAACGGATGTGTTGCCAATGCGGAGTGCGCGCGCAAAGGTCAACATCAGAACGTGGAGACCACCGCCCACCCGAATCTTCTCGGATCAATTTCTCGCGAGATCCAACGTACCAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

181

Amino Acids

19.66

Weight (kDa)

9.05

Isoelectric Point (pI)

28.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 30 - 64 2.9e-08 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 120, 134
AccBSI CCGCTC 2 cut(s) 30, 79
AccII CGCG 6 cut(s) 59, 68, 118, 455, 457, 522
AciI CCGC 9 cut(s) 5, 30, 77, 118, 176, 211, 258, 446, 489
AclWI GGATC 5 cut(s) 121, 138, 151, 517, 520
AcuI CTGAAG 3 cut(s) 76, 185, 402
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 2 cut(s) 62, 535
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 5 cut(s) 220, 324, 332, 394, 419
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 284
Alw26I GTCTC 2 cut(s) 14, 476
AlwI GGATC 5 cut(s) 121, 138, 151, 517, 520
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 1 cut(s) 267
AspLEI GCGC 5 cut(s) 70, 137, 455, 457, 459
AsuC2I CCSGG 2 cut(s) 111, 148
AvaI CYCGRG 1 cut(s) 25
BamHI GGATCC 1 cut(s) 143
BanI GGYRCC 2 cut(s) 120, 134
BbsI GAAGAC 2 cut(s) 158, 312
BcgI CGANNNNNNTGC 4 cut(s) 6, 37, 40, 71
BciT130I CCWGG 1 cut(s) 286
BcnI CCSGG 2 cut(s) 111, 148
BcoDI GTCTC 2 cut(s) 14, 476
BfmI CTRYAG 1 cut(s) 253
BfoI RGCGCY 1 cut(s) 138
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme1390I CCNGG 3 cut(s) 111, 148, 286
BmeT110I CYCGRG 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 205
BmiI GGNNCC 4 cut(s) 122, 136, 145, 283
BmrFI CCNGG 3 cut(s) 111, 148, 286
BpiI GAAGAC 2 cut(s) 158, 312
BpmI CTGGAG 1 cut(s) 307
BpuMI CCSGG 2 cut(s) 111, 148
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 2 cut(s) 14, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 437
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 102
BsePI GCGCGC 2 cut(s) 453, 455
Bsh1236I CGCG 6 cut(s) 59, 68, 118, 455, 457, 522
BshFI GGCC 1 cut(s) 269
BshNI GGYRCC 2 cut(s) 120, 134
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 2 cut(s) 111, 147
BsiWI CGTACG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 2 cut(s) 14, 476
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 1 cut(s) 269
Bso31I GGTCTC 2 cut(s) 14, 476
BsoBI CYCGRG 1 cut(s) 25
Bsp143I GATC 4 cut(s) 113, 143, 509, 525
Bsp68I TCGCGA 1 cut(s) 522
BspACI CCGC 9 cut(s) 5, 30, 77, 118, 176, 211, 258, 446, 489
BspANI GGCC 1 cut(s) 269
BspFNI CGCG 6 cut(s) 59, 68, 118, 455, 457, 522
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 4 cut(s) 122, 136, 145, 283
BspPI GGATC 5 cut(s) 121, 138, 151, 517, 520
BspQI GCTCTTC 1 cut(s) 86
BspT107I GGYRCC 2 cut(s) 120, 134
BspTNI GGTCTC 2 cut(s) 14, 476
BsrBI CCGCTC 2 cut(s) 30, 79
BsrDI GCAATG 1 cut(s) 102
BssHII GCGCGC 2 cut(s) 453, 455
BssMI GATC 4 cut(s) 113, 143, 509, 525
BssNI GRCGYC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 298, 318, 355
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 3 cut(s) 50, 455, 457
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 437
BstFNI CGCG 6 cut(s) 59, 68, 118, 455, 457, 522
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 5 cut(s) 70, 137, 455, 457, 459
BstKTI GATC 4 cut(s) 116, 146, 512, 528
BstMAI GTCTC 2 cut(s) 14, 476
BstMBI GATC 4 cut(s) 113, 143, 509, 525
BstMWI GCNNNNNNNGC 4 cut(s) 65, 76, 288, 452
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 3 cut(s) 109, 146, 284
BstSFI CTRYAG 1 cut(s) 253
BstUI CGCG 6 cut(s) 59, 68, 118, 455, 457, 522
BstV2I GAAGAC 2 cut(s) 158, 312
BstX2I RGATCY 2 cut(s) 143, 525
BstYI RGATCY 2 cut(s) 143, 525
BsuRI GGCC 1 cut(s) 269
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 437
BtsIMutI CAGTG 1 cut(s) 49
BtuMI TCGCGA 1 cut(s) 522
Cac8I GCNNGC 3 cut(s) 50, 455, 457
CciI TCATGA 1 cut(s) 235
CfoI GCGC 5 cut(s) 70, 137, 455, 457, 459
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 61, 534
CviAII CATG 2 cut(s) 49, 236
CviJI RGCY 5 cut(s) 96, 230, 269, 282, 303
CviKI_1 RGCY 5 cut(s) 96, 230, 269, 282, 303
CviQI GTAC 2 cut(s) 61, 534
DdeI CTNAG 1 cut(s) 309
DinI GGCGCC 1 cut(s) 136
DpnI GATC 4 cut(s) 115, 145, 511, 527
DpnII GATC 4 cut(s) 113, 143, 509, 525
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 2 cut(s) 14, 476
Eco57I CTGAAG 3 cut(s) 76, 185, 402
Eco88I CYCGRG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 284
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
FaeI CATG 2 cut(s) 52, 239
FaiI YATR 2 cut(s) 50, 237
FaqI GGGAC 1 cut(s) 215
FatI CATG 2 cut(s) 48, 235
FauI CCCGC 2 cut(s) 169, 204
Fnu4HI GCNGC 1 cut(s) 259
FokI GGATG 1 cut(s) 444
Fsp4HI GCNGC 1 cut(s) 259
GlaI GCGC 5 cut(s) 69, 136, 454, 456, 458
GluI GCNGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 307
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 269
HapII CCGG 2 cut(s) 111, 147
HgaI GACGC 1 cut(s) 74
HhaI GCGC 5 cut(s) 70, 137, 455, 457, 459
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 2 cut(s) 52, 239
Hin6I GCGC 5 cut(s) 68, 135, 453, 455, 457
HinP1I GCGC 5 cut(s) 68, 135, 453, 455, 457
HincII GTYRAC 1 cut(s) 467
HindII GTYRAC 1 cut(s) 467
HinfI GANTC 3 cut(s) 39, 362, 499
HpaII CCGG 2 cut(s) 111, 147
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 3 cut(s) 38, 474, 509
Hpy188III TCNNGA 2 cut(s) 236, 521
Hpy8I GTNNAC 1 cut(s) 467
Hpy99I CGWCG 2 cut(s) 68, 134
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 3 cut(s) 298, 318, 355
HpyCH4IV ACGT 3 cut(s) 204, 477, 532
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 76, 288, 452
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 3 cut(s) 204, 477, 532
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 2 cut(s) 52, 239
HspAI GCGC 5 cut(s) 68, 135, 453, 455, 457
KasI GGCGCC 1 cut(s) 134
Kzo9I GATC 4 cut(s) 113, 143, 509, 525
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 3 cut(s) 112, 287, 288
LpnPI CCDG 4 cut(s) 124, 160, 271, 298
MaeII ACGT 3 cut(s) 204, 477, 532
MaeIII GTNAC 1 cut(s) 374
MalI GATC 4 cut(s) 115, 145, 511, 527
MbiI CCGCTC 2 cut(s) 30, 79
MboI GATC 4 cut(s) 113, 143, 509, 525
MboII GAAGA 6 cut(s) 73, 163, 178, 312, 395, 494
MflI RGATCY 2 cut(s) 143, 525
MluCI AATT 2 cut(s) 53, 513
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 48
MnlI CCTC 7 cut(s) 34, 84, 107, 188, 192, 272, 402
MspI CCGG 2 cut(s) 111, 147
MspR9I CCNGG 3 cut(s) 111, 148, 286
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 6 cut(s) 59, 68, 118, 455, 457, 522
MwoI GCNNNNNNNGC 4 cut(s) 65, 76, 288, 452
NarI GGCGCC 1 cut(s) 135
NciI CCSGG 2 cut(s) 111, 148
NdeII GATC 4 cut(s) 113, 143, 509, 525
NlaIII CATG 2 cut(s) 52, 239
NlaIV GGNNCC 4 cut(s) 122, 136, 145, 283
NruI TCGCGA 1 cut(s) 522
NspI RCATGY 1 cut(s) 52
PaeI GCATGC 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 25
PagI TCATGA 1 cut(s) 235
PauI GCGCGC 2 cut(s) 453, 455
PciSI GCTCTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 362, 499
Pfl23II CGTACG 1 cut(s) 60
PfoI TCCNGGA 3 cut(s) 109, 146, 284
PkrI GCNGC 1 cut(s) 260
PleI GAGTC 1 cut(s) 47
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspLI CGTACG 1 cut(s) 60
PspN4I GGNNCC 4 cut(s) 122, 136, 145, 283
PspXI VCTCGAGB 1 cut(s) 25
PsuI RGATCY 2 cut(s) 143, 525
PteI GCGCGC 2 cut(s) 453, 455
RruI TCGCGA 1 cut(s) 522
RsaI GTAC 2 cut(s) 62, 535
RsaNI GTAC 2 cut(s) 61, 534
SapI GCTCTTC 1 cut(s) 86
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 4 cut(s) 113, 143, 509, 525
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 3 cut(s) 111, 148, 286
SetI ASST 7 cut(s) 26, 76, 207, 413, 466, 480, 535
SfcI CTRYAG 1 cut(s) 253
SfoI GGCGCC 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 25
SlaI CTCGAG 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SphI GCATGC 1 cut(s) 52
Sse9I AATT 2 cut(s) 53, 513
SsiI CCGC 9 cut(s) 5, 30, 77, 118, 176, 211, 258, 446, 489
SspDI GGCGCC 1 cut(s) 134
StyD4I CCNGG 3 cut(s) 109, 146, 284
TaaI ACNGT 3 cut(s) 298, 318, 355
TaiI ACGT 3 cut(s) 207, 480, 535
TaqI TCGA 1 cut(s) 26
TaqII GACCGA 1 cut(s) 362
TasI AATT 2 cut(s) 53, 513
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 2 cut(s) 362, 499
TscAI CASTG 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 2 cut(s) 156, 444
TspRI CASTG 1 cut(s) 49
XceI RCATGY 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.