Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003569

Physical Location & Seq

Genomic Coordinates Forward (+)

1589973 .. 1591012

Gene Structure 1040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCAAGAGTCATGTGGAAAAACTTCCATCTTTGCTTCCCATCAAATCTCACCAAGCCCTCTTCATCTCCGTCCGGTGCCACCTCCGACGATCCCAACCGTCCATCCATTCTTCTCATCAACAACTTTAACCTCCTATATGACGACTCCTCCGCCGCCCACCGCCGCCTATCCAAGCCTCTTATCCACGACGTTGAACCCTCTTCCACCTTCACCGCCTCCACCTCCACCGCAGCTAACTCTTCTTCCTCCTCTGCCTCTTATGATGATTCCGATAATTACGGTTTTGCCCCTGACGACGACTCTCCCCCTCCTGACTTAACCGCCGTTTTAGCCTCCCGCCGCTTCTTCTTCTCTTCTCCTGGCTGCTCAAACTCAATCACTGACTCGCCAGATCTCCGCTGCCGGGATAATTACGATACTGCCACTAGGCTTCTTACCGGAGGAACCGCCGTGAAACACTACGTGCAATCTCCTGATCCGTACAACGACTTCCGACGATCAATGCAGGAGATGATCGACGCCGTTACAAACGCCGGAGATCTTCGCCGTTACGAGTTCTTGCATGAGCTGTTACTCAGTTACCTCTCTTTAAATGCCGCCGATACACACAAGTTCATTATCAGAGCTTTCGCCGACATTCTCGTCTCTCTCCTATCGGACGGTCACCGGATCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

226

Amino Acids

24.97

Weight (kDa)

5.39

Isoelectric Point (pI)

58.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	158 - 218	1.2e-22	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05420 AT1G05420 AT2G32100 AT4G14860
fragaria_vesca	FvH4_1g09620 FvH4_2g23310 FvH4_4g15660
malus_domestica	MD00G1157000.v1.1 MD03G1262500.v1.1 MD11G1283200.v1.1 MD13G1193900.v1.1
prunus_persica	Prupe.1G014600_v2.0.a1 Prupe.8G238800_v2.0.a1
pyrus_communis	pycom11g25070 pycom13g16620 pycom16g16430
rosa_chinensis	RchiOBHm_Chr4g0416131 RchiOBHm_Chr6g0290721
rosa_laevigata	RLG00000008013 RLG00000012185
rosa_multiflora	Rmu_sc0000043.1_g000018 Rmu_sc0000750.1_g000016
rosa_roxburghii	Rroxscaffold_5G00359990 Rroxscaffold_7G00176780
rosa_rugosa	Rorug04G0138900 Rorug06G0214300
rosa_samantha	Rh4AG201200 Rh4BG198400 Rh4CG212400 Rh4DG198600 Rh6BG332400 Rh6DG325600 Rh7BG226200
rosa_wichuraiana	Rw4G017010 Rw6G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	77
AclWI	GGATC	3 cut(s)	86, 473, 680
AcyI	GRCGYC	1 cut(s)	522
AdeI	CACNNNGTG	1 cut(s)	466
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	4 cut(s)	236, 571, 629, 678
AluI	AGCT	4 cut(s)	236, 571, 629, 678
Alw26I	GTCTC	1 cut(s)	652
AlwI	GGATC	3 cut(s)	86, 473, 680
ApeKI	GCWGC	3 cut(s)	233, 366, 402
Asp700I	GAANNNNTTC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	407
AsuHPI	GGTGA	3 cut(s)	43, 205, 659
BanI	GGYRCC	1 cut(s)	77
BarI	GAAGNNNNNNTAC	2 cut(s)	476, 508
BbvI	GCAGC	3 cut(s)	245, 353, 389
BccI	CCATC	3 cut(s)	36, 49, 112
BceAI	ACGGC	4 cut(s)	311, 437, 509, 534
BciT130I	CCWGG	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	407
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	1 cut(s)	429
BglII	AGATCT	2 cut(s)	394, 541
BisI	GCNGC	7 cut(s)	156, 166, 234, 343, 367, 403, 600
BlsI	GCNGC	7 cut(s)	157, 167, 235, 344, 368, 404, 601
Bme1390I	CCNGG	2 cut(s)	363, 407
BmiI	GGNNCC	2 cut(s)	79, 448
BmrFI	CCNGG	2 cut(s)	363, 407
BpuMI	CCSGG	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	466
BsaHI	GRCGYC	1 cut(s)	522
BsaWI	WCCGGW	3 cut(s)	74, 440, 669
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMII	CTCAG	1 cut(s)	592
BseRI	GAGGAG	2 cut(s)	139, 241
BseXI	GCAGC	3 cut(s)	245, 353, 389
BshNI	GGYRCC	1 cut(s)	77
BsiSI	CCGG	5 cut(s)	75, 406, 441, 537, 670
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	1 cut(s)	652
BsmBI	CGTCTC	1 cut(s)	652
Bsp143I	GATC	7 cut(s)	91, 394, 478, 500, 516, 541, 672
BspCNI	CTCAG	1 cut(s)	591
BspLI	GGNNCC	2 cut(s)	79, 448
BspPI	GGATC	3 cut(s)	86, 473, 680
BspT107I	GGYRCC	1 cut(s)	77
BssMI	GATC	7 cut(s)	91, 394, 478, 500, 516, 541, 672
BssNI	GRCGYC	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	3 cut(s)	101, 284, 665
Bst6I	CTCTTC	4 cut(s)	67, 208, 247, 361
BstACI	GRCGYC	1 cut(s)	522
BstBAI	YACGTR	1 cut(s)	466
BstDEI	CTNAG	1 cut(s)	578
BstEII	GGTNACC	1 cut(s)	665
BstF5I	GGATG	1 cut(s)	104
BstKTI	GATC	7 cut(s)	94, 397, 481, 503, 519, 544, 675
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	7 cut(s)	91, 394, 478, 500, 516, 541, 672
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	363
BstPI	GGTNACC	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	361, 405
BstV1I	GCAGC	3 cut(s)	245, 353, 389
BstX2I	RGATCY	2 cut(s)	394, 541
BstYI	RGATCY	2 cut(s)	394, 541
BtsCI	GGATG	1 cut(s)	104
BtsIMutI	CAGTG	1 cut(s)	381
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	2 cut(s)	13, 566
CviJI	RGCY	9 cut(s)	58, 178, 236, 335, 366, 433, 571, 629, 678
CviKI_1	RGCY	9 cut(s)	58, 178, 236, 335, 366, 433, 571, 629, 678
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	1 cut(s)	578
DpnI	GATC	7 cut(s)	93, 396, 480, 502, 518, 543, 674
DpnII	GATC	7 cut(s)	91, 394, 478, 500, 516, 541, 672
DraI	TTTAAA	1 cut(s)	594
DraIII	CACNNNGTG	1 cut(s)	466
DrdI	GACNNNNNNGTC	1 cut(s)	644
DseDI	GACNNNNNNGTC	1 cut(s)	644
Eam1104I	CTCTTC	4 cut(s)	67, 208, 247, 361
EarI	CTCTTC	4 cut(s)	67, 208, 247, 361
EciI	GGCGGA	1 cut(s)	142
Eco91I	GGTNACC	1 cut(s)	665
EcoO65I	GGTNACC	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	361
Esp3I	CGTCTC	1 cut(s)	652
FaeI	CATG	2 cut(s)	16, 569
FaiI	YATR	5 cut(s)	14, 139, 141, 264, 567
FatI	CATG	2 cut(s)	12, 565
FauI	CCCGC	1 cut(s)	347
Fnu4HI	GCNGC	7 cut(s)	156, 166, 234, 343, 367, 403, 600
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	7 cut(s)	156, 166, 234, 343, 367, 403, 600
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	7 cut(s)	156, 166, 234, 343, 367, 403, 600
HapII	CCGG	5 cut(s)	75, 406, 441, 537, 670
HgaI	GACGC	1 cut(s)	530
Hin1I	GRCGYC	1 cut(s)	522
Hin1II	CATG	2 cut(s)	16, 569
HinfI	GANTC	5 cut(s)	9, 146, 269, 302, 386
HpaII	CCGG	5 cut(s)	75, 406, 441, 537, 670
HphI	GGTGA	3 cut(s)	43, 205, 659
Hpy188I	TCNGA	5 cut(s)	88, 274, 497, 626, 661
Hpy188III	TCNNGA	2 cut(s)	314, 476
Hpy99I	CGWCG	5 cut(s)	92, 194, 302, 501, 524
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	3 cut(s)	101, 284, 665
HpyCH4IV	ACGT	2 cut(s)	192, 465
HpyCH4V	TGCA	3 cut(s)	469, 508, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	578
HpySE526I	ACGT	2 cut(s)	192, 465
Hsp92I	GRCGYC	1 cut(s)	522
Hsp92II	CATG	2 cut(s)	16, 569
Kzo9I	GATC	7 cut(s)	91, 394, 478, 500, 516, 541, 672
Lsp1109I	GCAGC	3 cut(s)	245, 353, 389
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	2 cut(s)	192, 465
MaeIII	GTNAC	5 cut(s)	526, 551, 573, 581, 665
MalI	GATC	7 cut(s)	93, 396, 480, 502, 518, 543, 674
MboI	GATC	7 cut(s)	91, 394, 478, 500, 516, 541, 672
MboII	GAAGA	9 cut(s)	54, 104, 195, 234, 237, 340, 343, 348, 536
MflI	RGATCY	2 cut(s)	394, 541
MluCI	AATT	2 cut(s)	277, 412
MlyI	GAGTC	4 cut(s)	18, 140, 296, 380
MmeI	TCCRAC	2 cut(s)	111, 520
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	3 cut(s)	129, 320, 593
MspA1I	CMGCKG	2 cut(s)	402, 678
MspI	CCGG	5 cut(s)	75, 406, 441, 537, 670
MspR9I	CCNGG	2 cut(s)	363, 407
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	332
NciI	CCSGG	1 cut(s)	407
NdeII	GATC	7 cut(s)	91, 394, 478, 500, 516, 541, 672
NlaIII	CATG	2 cut(s)	16, 569
NlaIV	GGNNCC	2 cut(s)	79, 448
NmuCI	GTSAC	1 cut(s)	665
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	7 cut(s)	157, 167, 235, 344, 368, 404, 601
PleI	GAGTC	4 cut(s)	17, 140, 296, 380
PpsI	GAGTC	4 cut(s)	17, 140, 296, 380
Ppu21I	YACGTR	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	361
PspEI	GGTNACC	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	79, 448
PsuI	RGATCY	2 cut(s)	394, 541
PvuII	CAGCTG	1 cut(s)	678
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SaqAI	TTAA	3 cut(s)	129, 320, 593
SatI	GCNGC	7 cut(s)	156, 166, 234, 343, 367, 403, 600
Sau3AI	GATC	7 cut(s)	91, 394, 478, 500, 516, 541, 672
SchI	GAGTC	4 cut(s)	18, 140, 296, 380
ScrFI	CCNGG	2 cut(s)	363, 407
Sse9I	AATT	2 cut(s)	277, 412
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	361, 405
TaaI	ACNGT	3 cut(s)	101, 284, 665
TaiI	ACGT	2 cut(s)	195, 468
TaqI	TCGA	1 cut(s)	519
TasI	AATT	2 cut(s)	277, 412
TauI	GCSGC	4 cut(s)	158, 168, 345, 602
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	3 cut(s)	129, 320, 593
Tru9I	TTAA	3 cut(s)	129, 320, 593
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	665
TseI	GCWGC	3 cut(s)	233, 366, 402
Tsp45I	GTSAC	1 cut(s)	665
TspDTI	ATGAA	2 cut(s)	54, 607
TspGWI	ACGGA	2 cut(s)	60, 471
TspRI	CASTG	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.