FvH4_2g23310

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003569
Physical Location & Seq
Forward (+)
19081213 .. 19082132
920 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23310.t1

Sequence Viewer

Length: 690 bp
ATGCCAAGCACCCTCGGAAGGAACTTAAATCTCTGCTTCACAAAGATCAAGCGGCCACTCTTGACTCTCCAATCTCCTCCCGTCGACGATCACCGATCTCCACCAACAACTACCTCCACCGTCTCCACGGCCATGTCATCCTCGACTGTTATAAAAAACTTCAACTCCCTCTACGACGGAGACCACGCCTTCTTCGACTCCGCCACCACCTCCTCCTCCATTAAGTCTTCCGATCTCTCCACCACAGAAACCGAAAACGACACAGACACCACCGCCGCCGCCGACTTCGCCACCGTCTTCGCCTCCCAGCGCTTCTTCTTCTCCTCGCCCGGCCGCTCCAACTCCATTGTCGACCAGTCCTCCTCCTCCTCGTCTTCCTCCGACCTCCACGCGCCCTTCAAGCACAACAGCGTGGCGGTGCCAACGTACTCGCCCGACCCCTACCTCGACTTTCGGCGCTCCATGCAGGAGATGGTGGAGGCGCGTGAGCACCAGACGGAGGACGAGAGCGTGAAGGTCAAATCTAACTGGGAGTTCCTGCATGAGCTGCTCCTGTGTTATCTCGCGCTCAACCCTAAGAGCACTCACAAGTTCATCATCGGCGCATTTTCCGATCTCCTCGTCAGTCTCCTCCCCTCACCCAAAGATCCCGAGTTCACCGCCGGCGTCTGCGAGATTTCCCGGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

230

Amino Acids

25.18

Weight (kDa)

5.3

Isoelectric Point (pI)

61.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 144 - 210 5.8e-24 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 418
AccBSI CCGCTC 1 cut(s) 336
AccI GTMKAC 2 cut(s) 84, 351
AccII CGCG 3 cut(s) 392, 484, 566
AciI CCGC 8 cut(s) 52, 201, 273, 276, 279, 334, 416, 660
AclWI GGATC 1 cut(s) 641
AcoI YGGCCR 3 cut(s) 53, 129, 331
AcyI GRCGYC 1 cut(s) 666
AfaI GTAC 1 cut(s) 428
AfeI AGCGCT 1 cut(s) 311
AfiI CCNNNNNNNGG 2 cut(s) 18, 499
AgsI TTSAA 2 cut(s) 163, 400
AluBI AGCT 1 cut(s) 547
AluI AGCT 1 cut(s) 547
Alw21I GWGCWC 2 cut(s) 492, 584
Alw26I GTCTC 3 cut(s) 127, 174, 632
AlwI GGATC 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 650
Aor51HI AGCGCT 1 cut(s) 311
AoxI GGCC 3 cut(s) 53, 129, 331
ApeKI GCWGC 1 cut(s) 547
AspLEI GCGC 6 cut(s) 312, 394, 459, 484, 568, 605
AsuC2I CCSGG 2 cut(s) 330, 682
AsuHPI GGTGA 3 cut(s) 83, 630, 649
AvaI CYCGRG 1 cut(s) 650
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 3 cut(s) 219, 289, 366
Bbv12I GWGCWC 2 cut(s) 492, 584
BbvI GCAGC 1 cut(s) 534
BccI CCATC 1 cut(s) 466
BceAI ACGGC 1 cut(s) 144
BcnI CCSGG 2 cut(s) 330, 682
BcoDI GTCTC 3 cut(s) 127, 174, 632
BfaI CTAG 1 cut(s) 688
BfoI RGCGCY 2 cut(s) 313, 460
BisI GCNGC 5 cut(s) 53, 276, 279, 334, 548
BlsI GCNGC 5 cut(s) 54, 277, 280, 335, 549
Bme1390I CCNGG 2 cut(s) 330, 682
BmeT110I CYCGRG 1 cut(s) 650
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 2 cut(s) 330, 682
BmrI ACTGGG 1 cut(s) 538
BmuI ACTGGG 1 cut(s) 538
BpiI GAAGAC 3 cut(s) 219, 289, 366
BpuMI CCSGG 2 cut(s) 330, 682
BsaHI GRCGYC 1 cut(s) 666
BsaI GGTCTC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 13, 126
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 344, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 499
Bse118I RCCGGY 1 cut(s) 662
Bse1I ACTGG 2 cut(s) 355, 533
BseDI CCNNGG 2 cut(s) 13, 126
BseGI GGATG 1 cut(s) 137
BseLI CCNNNNNNNGG 2 cut(s) 18, 499
BseNI ACTGG 2 cut(s) 355, 533
BseRI GAGGAG 9 cut(s) 66, 202, 205, 313, 352, 355, 358, 608, 620
BseX3I CGGCCG 1 cut(s) 331
BseXI GCAGC 1 cut(s) 534
BseYI CCCAGC 1 cut(s) 306
Bsh1236I CGCG 3 cut(s) 392, 484, 566
Bsh1285I CGRYCG 1 cut(s) 334
BshFI GGCC 3 cut(s) 55, 131, 333
BshNI GGYRCC 1 cut(s) 418
BsiEI CGRYCG 1 cut(s) 334
BsiHKAI GWGCWC 2 cut(s) 492, 584
BsiHKCI CYCGRG 1 cut(s) 650
BsiSI CCGG 3 cut(s) 330, 663, 682
BslI CCNNNNNNNGG 2 cut(s) 18, 499
BsmAI GTCTC 3 cut(s) 127, 174, 632
BsmBI CGTCTC 1 cut(s) 127
BsnI GGCC 3 cut(s) 55, 131, 333
Bso31I GGTCTC 1 cut(s) 174
BsoBI CYCGRG 1 cut(s) 650
Bsp1286I GDGCHC 2 cut(s) 492, 584
Bsp143I GATC 6 cut(s) 45, 88, 95, 232, 613, 646
BspACI CCGC 8 cut(s) 52, 201, 273, 276, 279, 334, 416, 660
BspANI GGCC 3 cut(s) 55, 131, 333
BspFNI CGCG 3 cut(s) 392, 484, 566
BspLI GGNNCC 1 cut(s) 420
BspPI GGATC 1 cut(s) 641
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 174
BsrBI CCGCTC 1 cut(s) 336
BsrFI RCCGGY 1 cut(s) 662
BsrI ACTGG 2 cut(s) 355, 533
BssAI RCCGGY 1 cut(s) 662
BssECI CCNNGG 2 cut(s) 13, 126
BssMI GATC 6 cut(s) 45, 88, 95, 232, 613, 646
BssNI GRCGYC 1 cut(s) 666
Bst4CI ACNGT 3 cut(s) 121, 148, 295
BstACI GRCGYC 1 cut(s) 666
BstAPI GCANNNNNTGC 1 cut(s) 547
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 1 cut(s) 576
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 137
BstFNI CGCG 3 cut(s) 392, 484, 566
BstH2I RGCGCY 2 cut(s) 313, 460
BstHHI GCGC 6 cut(s) 312, 394, 459, 484, 568, 605
BstKTI GATC 6 cut(s) 48, 91, 98, 235, 616, 649
BstMAI GTCTC 3 cut(s) 127, 174, 632
BstMBI GATC 6 cut(s) 45, 88, 95, 232, 613, 646
BstMCI CGRYCG 1 cut(s) 334
BstMWI GCNNNNNNNGC 4 cut(s) 287, 400, 463, 547
BstSCI CCNGG 2 cut(s) 328, 680
BstUI CGCG 3 cut(s) 392, 484, 566
BstV1I GCAGC 1 cut(s) 534
BstV2I GAAGAC 3 cut(s) 219, 289, 366
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BstZI CGGCCG 1 cut(s) 331
BsuRI GGCC 3 cut(s) 55, 131, 333
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 664
CfoI GCGC 6 cut(s) 312, 394, 459, 484, 568, 605
Cfr10I RCCGGY 1 cut(s) 662
CseI GACGC 1 cut(s) 655
Csp6I GTAC 1 cut(s) 427
CviAII CATG 3 cut(s) 133, 463, 542
CviJI RGCY 4 cut(s) 55, 131, 333, 547
CviKI_1 RGCY 4 cut(s) 55, 131, 333, 547
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 1 cut(s) 576
DpnI GATC 6 cut(s) 47, 90, 97, 234, 615, 648
DpnII GATC 6 cut(s) 45, 88, 95, 232, 613, 646
EaeI YGGCCR 3 cut(s) 53, 129, 331
EagI CGGCCG 1 cut(s) 331
EciI GGCGGA 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 174
Eco47III AGCGCT 1 cut(s) 311
Eco52I CGGCCG 1 cut(s) 331
Eco88I CYCGRG 1 cut(s) 650
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 3 cut(s) 136, 466, 545
FaiI YATR 4 cut(s) 134, 152, 464, 543
FatI CATG 3 cut(s) 132, 462, 541
FblI GTMKAC 2 cut(s) 84, 351
Fnu4HI GCNGC 5 cut(s) 53, 276, 279, 334, 548
FokI GGATG 1 cut(s) 124
Fsp4HI GCNGC 5 cut(s) 53, 276, 279, 334, 548
FspBI CTAG 1 cut(s) 688
GlaI GCGC 6 cut(s) 311, 393, 458, 483, 567, 604
GluI GCNGC 5 cut(s) 53, 276, 279, 334, 548
GsaI CCCAGC 1 cut(s) 310
HaeII RGCGCY 2 cut(s) 313, 460
HaeIII GGCC 3 cut(s) 55, 131, 333
HapII CCGG 3 cut(s) 330, 663, 682
HgaI GACGC 1 cut(s) 655
HhaI GCGC 6 cut(s) 312, 394, 459, 484, 568, 605
Hin1I GRCGYC 1 cut(s) 666
Hin1II CATG 3 cut(s) 136, 466, 545
Hin6I GCGC 6 cut(s) 310, 392, 457, 482, 566, 603
HinP1I GCGC 6 cut(s) 310, 392, 457, 482, 566, 603
HincII GTYRAC 2 cut(s) 85, 352
HindII GTYRAC 2 cut(s) 85, 352
HinfI GANTC 2 cut(s) 64, 197
HpaII CCGG 3 cut(s) 330, 663, 682
HphI GGTGA 3 cut(s) 83, 630, 649
Hpy166II GTNNAC 3 cut(s) 85, 352, 657
Hpy188I TCNGA 4 cut(s) 17, 232, 382, 613
Hpy188III TCNNGA 2 cut(s) 61, 650
Hpy8I GTNNAC 3 cut(s) 85, 352, 657
Hpy99I CGWCG 3 cut(s) 86, 89, 179
HpyAV CCTTC 4 cut(s) 12, 199, 406, 508
HpyCH4III ACNGT 3 cut(s) 121, 148, 295
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 2 cut(s) 466, 541
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 400, 463, 547
HpyF3I CTNAG 1 cut(s) 576
HpySE526I ACGT 1 cut(s) 425
Hsp92I GRCGYC 1 cut(s) 666
Hsp92II CATG 3 cut(s) 136, 466, 545
HspAI GCGC 6 cut(s) 310, 392, 457, 482, 566, 603
KroI GCCGGC 1 cut(s) 662
KroNI GCCGGC 1 cut(s) 664
Kzo9I GATC 6 cut(s) 45, 88, 95, 232, 613, 646
LmnI GCTCC 3 cut(s) 341, 464, 555
LpnPI CCDG 9 cut(s) 320, 343, 368, 452, 506, 514, 551, 566, 676
Lsp1109I GCAGC 1 cut(s) 534
MaeI CTAG 1 cut(s) 688
MaeII ACGT 1 cut(s) 425
MalI GATC 6 cut(s) 47, 90, 97, 234, 615, 648
MbiI CCGCTC 1 cut(s) 336
MboI GATC 6 cut(s) 45, 88, 95, 232, 613, 646
MboII GAAGA 6 cut(s) 184, 219, 289, 307, 310, 366
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 2 cut(s) 492, 584
MlyI GAGTC 2 cut(s) 58, 191
MmeI TCCRAC 2 cut(s) 363, 405
MreI CGCCGGCG 1 cut(s) 662
MroNI GCCGGC 1 cut(s) 662
MseI TTAA 2 cut(s) 26, 222
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 3 cut(s) 330, 663, 682
MspR9I CCNGG 2 cut(s) 330, 682
MvnI CGCG 3 cut(s) 392, 484, 566
MwoI GCNNNNNNNGC 4 cut(s) 287, 400, 463, 547
NaeI GCCGGC 1 cut(s) 664
NciI CCSGG 2 cut(s) 330, 682
NdeII GATC 6 cut(s) 45, 88, 95, 232, 613, 646
NgoMIV GCCGGC 1 cut(s) 662
NlaIII CATG 3 cut(s) 136, 466, 545
NlaIV GGNNCC 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdiI GCCGGC 1 cut(s) 664
PkrI GCNGC 5 cut(s) 54, 277, 280, 335, 549
PleI GAGTC 2 cut(s) 58, 191
PpsI GAGTC 2 cut(s) 58, 191
PsiI TTATAA 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 420
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 131
SalI GTCGAC 2 cut(s) 83, 350
SaqAI TTAA 2 cut(s) 26, 222
SatI GCNGC 5 cut(s) 53, 276, 279, 334, 548
Sau3AI GATC 6 cut(s) 45, 88, 95, 232, 613, 646
SchI GAGTC 2 cut(s) 58, 191
ScrFI CCNGG 2 cut(s) 330, 682
SduI GDGCHC 2 cut(s) 492, 584
SetI ASST 7 cut(s) 116, 212, 387, 428, 447, 519, 549
SgrAI CRCCGGYG 1 cut(s) 662
SgrDI CGTCGACG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 131
SsiI CCGC 8 cut(s) 52, 201, 273, 276, 279, 334, 416, 660
SspMI CTAG 1 cut(s) 688
StyD4I CCNGG 2 cut(s) 328, 680
TaaI ACNGT 3 cut(s) 121, 148, 295
TaiI ACGT 1 cut(s) 428
TaqI TCGA 5 cut(s) 84, 143, 195, 351, 447
TauI GCSGC 4 cut(s) 55, 278, 281, 336
Tru1I TTAA 2 cut(s) 26, 222
Tru9I TTAA 2 cut(s) 26, 222
TseI GCWGC 1 cut(s) 547
TspDTI ATGAA 1 cut(s) 583
TspGWI ACGGA 2 cut(s) 192, 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XmiI GTMKAC 2 cut(s) 84, 351
XspI CTAG 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.