RchiOBHm_Chr6g0290721

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003569
Physical Location & Seq
Forward (+)
53724130 .. 53725056
927 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26083

Sequence Viewer

Length: 711 bp
ATGCCGAGCACGCTAGGAAGGAACTTAAATCTCTGCTTCACAAAGATCAAACGGCCACTGTTGACTCTCCAATCCCCTCCCATCGACGATCACCGTTCTTTACCAACAACCACCTCCACCGCCACCGCCTCCGGCTCCGGCTCCACCGCCACGTCATCCTCAACTCTGATAAAAAACTTCAACTCCCTCTACGACGGAGACCACGCCTGCTTCGACTCCGCCACCACCTCCTGCTCCATCAAGTCCTCCGATCTTTCCACCTCCGAAACCGAAAACGACACCGACACCGCCGCCGACTTCGCCACCGTCTTCGCGTCCCAGCGGTTCTTCTTTTCCTCCCCCGGCCGCTCTAACTCCATTGTCGACCAGTCCTCCTCCTCCTCCACGTCGTCTTCCTCGGACCTCCACGCGCCCTTCAAGCACAACAGCGTGGCGGTCCCCACGTACTCGCCTGACCCCTACCTCGACTTCCGGCGCTCCATGCAGGAGATGGTGGAGGCGCGCGAGCACCAGACCGAGGACGAGAGCGTGAAGATCAAATCTAACTGGGAGTTCCTGCATGAGCTGCTCTTGTGTTATCTCGCGCTCAACCCTAAGAGCACTCACAAGTTCATCATCGGCGCATTTTCCGATCTCCTTGTCAGCCTCCTCCCCTCCCCCAAAGATCCCGACTTCACCGCCGGCGTCTGCGAGATTTCCCGGTGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

236

Amino Acids

25.69

Weight (kDa)

5.29

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 150 - 216 9.5e-24 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 348
AccI GTMKAC 1 cut(s) 363
AccII CGCG 5 cut(s) 314, 410, 502, 504, 584
AclWI GGATC 1 cut(s) 659
AcoI YGGCCR 2 cut(s) 53, 343
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 1 cut(s) 517
AgsI TTSAA 2 cut(s) 181, 418
AjiI CACGTC 2 cut(s) 153, 387
AluBI AGCT 1 cut(s) 565
AluI AGCT 1 cut(s) 565
Alw21I GWGCWC 3 cut(s) 11, 510, 602
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 659
AoxI GGCC 2 cut(s) 53, 343
ApeKI GCWGC 1 cut(s) 565
AspLEI GCGC 6 cut(s) 412, 477, 502, 504, 586, 623
AspS9I GGNCC 2 cut(s) 400, 436
AsuC2I CCSGG 2 cut(s) 342, 700
AsuHPI GGTGA 2 cut(s) 83, 667
AvaII GGWCC 2 cut(s) 400, 436
BbsI GAAGAC 2 cut(s) 301, 384
Bbv12I GWGCWC 3 cut(s) 11, 510, 602
BbvI GCAGC 1 cut(s) 552
BccI CCATC 3 cut(s) 89, 245, 484
BceAI ACGGC 1 cut(s) 68
BcnI CCSGG 2 cut(s) 342, 700
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 478
BisI GCNGC 3 cut(s) 291, 346, 566
BlsI GCNGC 3 cut(s) 292, 347, 567
Bme1390I CCNGG 2 cut(s) 342, 700
Bme18I GGWCC 2 cut(s) 400, 436
BmgBI CACGTC 2 cut(s) 153, 387
BmgT120I GGNCC 2 cut(s) 400, 436
BmiI GGNNCC 3 cut(s) 136, 142, 438
BmrFI CCNGG 2 cut(s) 342, 700
BmrI ACTGGG 1 cut(s) 556
BmuI ACTGGG 1 cut(s) 556
BpiI GAAGAC 2 cut(s) 301, 384
BpuMI CCSGG 2 cut(s) 342, 700
BsaAI YACGTR 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 684
BsaI GGTCTC 1 cut(s) 192
BsaJI CCNNGG 3 cut(s) 340, 396, 516
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 356, 386
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse118I RCCGGY 1 cut(s) 680
Bse1I ACTGG 2 cut(s) 367, 551
BseDI CCNNGG 3 cut(s) 340, 396, 516
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 517
BseNI ACTGG 2 cut(s) 367, 551
BsePI GCGCGC 1 cut(s) 500
BseRI GAGGAG 4 cut(s) 364, 367, 370, 638
BseX3I CGGCCG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 552
BseYI CCCAGC 1 cut(s) 318
Bsh1236I CGCG 5 cut(s) 314, 410, 502, 504, 584
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 2 cut(s) 55, 345
BsiEI CGRYCG 1 cut(s) 346
BsiHKAI GWGCWC 3 cut(s) 11, 510, 602
BsiSI CCGG 6 cut(s) 132, 138, 342, 472, 681, 700
BslFI GGGAC 2 cut(s) 301, 422
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 2 cut(s) 301, 422
BsnI GGCC 2 cut(s) 55, 345
Bso31I GGTCTC 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 11, 510, 602
Bsp143I GATC 6 cut(s) 45, 88, 250, 534, 631, 664
BspANI GGCC 2 cut(s) 55, 345
BspFNI CGCG 5 cut(s) 314, 410, 502, 504, 584
BspLI GGNNCC 3 cut(s) 136, 142, 438
BspPI GGATC 1 cut(s) 659
BspTNI GGTCTC 1 cut(s) 192
BsrBI CCGCTC 1 cut(s) 348
BsrFI RCCGGY 1 cut(s) 680
BsrI ACTGG 2 cut(s) 367, 551
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 3 cut(s) 340, 396, 516
BssHII GCGCGC 1 cut(s) 500
BssMI GATC 6 cut(s) 45, 88, 250, 534, 631, 664
BssNI GRCGYC 1 cut(s) 684
Bst4CI ACNGT 3 cut(s) 60, 95, 307
BstACI GRCGYC 1 cut(s) 684
BstAPI GCANNNNNTGC 1 cut(s) 565
BstBAI YACGTR 1 cut(s) 444
BstC8I GCNNGC 5 cut(s) 11, 208, 502, 506, 682
BstDEI CTNAG 1 cut(s) 594
BstF5I GGATG 1 cut(s) 155
BstFNI CGCG 5 cut(s) 314, 410, 502, 504, 584
BstH2I RGCGCY 1 cut(s) 478
BstHHI GCGC 6 cut(s) 412, 477, 502, 504, 586, 623
BstKTI GATC 6 cut(s) 48, 91, 253, 537, 634, 667
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 6 cut(s) 45, 88, 250, 534, 631, 664
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 5 cut(s) 10, 299, 418, 481, 565
BstSCI CCNGG 2 cut(s) 340, 698
BstUI CGCG 5 cut(s) 314, 410, 502, 504, 584
BstV1I GCAGC 1 cut(s) 552
BstV2I GAAGAC 2 cut(s) 301, 384
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BstZI CGGCCG 1 cut(s) 343
BsuRI GGCC 2 cut(s) 55, 345
BtrI CACGTC 2 cut(s) 153, 387
BtsCI GGATG 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 5 cut(s) 11, 208, 502, 506, 682
CfoI GCGC 6 cut(s) 412, 477, 502, 504, 586, 623
Cfr10I RCCGGY 1 cut(s) 680
Cfr13I GGNCC 2 cut(s) 400, 436
CseI GACGC 2 cut(s) 303, 673
Csp6I GTAC 1 cut(s) 445
CviAII CATG 2 cut(s) 481, 560
CviJI RGCY 6 cut(s) 55, 135, 141, 345, 565, 645
CviKI_1 RGCY 6 cut(s) 55, 135, 141, 345, 565, 645
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 1 cut(s) 594
DpnI GATC 6 cut(s) 47, 90, 252, 536, 633, 666
DpnII GATC 6 cut(s) 45, 88, 250, 534, 631, 664
EaeI YGGCCR 2 cut(s) 53, 343
EagI CGGCCG 1 cut(s) 343
EciI GGCGGA 1 cut(s) 208
EclXI CGGCCG 1 cut(s) 343
Eco31I GGTCTC 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 400, 436
Eco52I CGGCCG 1 cut(s) 343
FaeI CATG 2 cut(s) 484, 563
FaiI YATR 2 cut(s) 482, 561
FaqI GGGAC 2 cut(s) 301, 422
FatI CATG 2 cut(s) 480, 559
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 291, 346, 566
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 3 cut(s) 291, 346, 566
FspBI CTAG 1 cut(s) 14
GlaI GCGC 6 cut(s) 411, 476, 501, 503, 585, 622
GluI GCNGC 3 cut(s) 291, 346, 566
GsaI CCCAGC 1 cut(s) 322
HaeII RGCGCY 1 cut(s) 478
HaeIII GGCC 2 cut(s) 55, 345
HapII CCGG 6 cut(s) 132, 138, 342, 472, 681, 700
HgaI GACGC 2 cut(s) 303, 673
HhaI GCGC 6 cut(s) 412, 477, 502, 504, 586, 623
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 2 cut(s) 484, 563
Hin6I GCGC 6 cut(s) 410, 475, 500, 502, 584, 621
HinP1I GCGC 6 cut(s) 410, 475, 500, 502, 584, 621
HincII GTYRAC 2 cut(s) 63, 364
HindII GTYRAC 2 cut(s) 63, 364
HinfI GANTC 2 cut(s) 64, 215
HpaII CCGG 6 cut(s) 132, 138, 342, 472, 681, 700
HphI GGTGA 2 cut(s) 83, 667
Hpy166II GTNNAC 2 cut(s) 63, 364
Hpy188I TCNGA 5 cut(s) 168, 250, 265, 400, 631
Hpy188III TCNNGA 1 cut(s) 668
Hpy8I GTNNAC 2 cut(s) 63, 364
Hpy99I CGWCG 3 cut(s) 89, 197, 391
HpyAV CCTTC 2 cut(s) 12, 424
HpyCH4III ACNGT 3 cut(s) 60, 95, 307
HpyCH4IV ACGT 3 cut(s) 152, 386, 443
HpyCH4V TGCA 3 cut(s) 484, 559, 705
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 299, 418, 481, 565
HpyF3I CTNAG 1 cut(s) 594
HpySE526I ACGT 3 cut(s) 152, 386, 443
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 2 cut(s) 484, 563
HspAI GCGC 6 cut(s) 410, 475, 500, 502, 584, 621
KroI GCCGGC 1 cut(s) 680
KroNI GCCGGC 1 cut(s) 682
Kzo9I GATC 6 cut(s) 45, 88, 250, 534, 631, 664
LmnI GCTCC 4 cut(s) 140, 146, 239, 482
Lsp1109I GCAGC 1 cut(s) 552
MaeI CTAG 1 cut(s) 14
MaeII ACGT 3 cut(s) 152, 386, 443
MalI GATC 6 cut(s) 47, 90, 252, 536, 633, 666
MbiI CCGCTC 1 cut(s) 348
MboI GATC 6 cut(s) 45, 88, 250, 534, 631, 664
MboII GAAGA 4 cut(s) 301, 319, 384, 544
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 3 cut(s) 11, 510, 602
MlyI GAGTC 2 cut(s) 58, 209
MreI CGCCGGCG 1 cut(s) 680
MroNI GCCGGC 1 cut(s) 680
MseI TTAA 2 cut(s) 26, 709
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 6 cut(s) 132, 138, 342, 472, 681, 700
MspR9I CCNGG 2 cut(s) 342, 700
MvnI CGCG 5 cut(s) 314, 410, 502, 504, 584
MwoI GCNNNNNNNGC 5 cut(s) 10, 299, 418, 481, 565
NaeI GCCGGC 1 cut(s) 682
NciI CCSGG 2 cut(s) 342, 700
NdeII GATC 6 cut(s) 45, 88, 250, 534, 631, 664
NgoMIV GCCGGC 1 cut(s) 680
NlaIII CATG 2 cut(s) 484, 563
NlaIV GGNNCC 3 cut(s) 136, 142, 438
NmeAIII GCCGAG 1 cut(s) 30
PauI GCGCGC 1 cut(s) 500
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdiI GCCGGC 1 cut(s) 682
PkrI GCNGC 3 cut(s) 292, 347, 567
PleI GAGTC 2 cut(s) 58, 209
PpsI GAGTC 2 cut(s) 58, 209
Ppu21I YACGTR 1 cut(s) 444
PspFI CCCAGC 1 cut(s) 318
PspN4I GGNNCC 3 cut(s) 136, 142, 438
PspPI GGNCC 2 cut(s) 400, 436
PsuI RGATCY 1 cut(s) 664
PteI GCGCGC 1 cut(s) 500
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 26, 709
SatI GCNGC 3 cut(s) 291, 346, 566
Sau3AI GATC 6 cut(s) 45, 88, 250, 534, 631, 664
Sau96I GGNCC 2 cut(s) 400, 436
SchI GAGTC 2 cut(s) 58, 209
ScrFI CCNGG 2 cut(s) 342, 700
SduI GDGCHC 3 cut(s) 11, 510, 602
SetI ASST 9 cut(s) 116, 155, 230, 263, 389, 405, 446, 465, 567
SgrAI CRCCGGYG 1 cut(s) 680
SinI GGWCC 2 cut(s) 400, 436
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 340, 698
TaaI ACNGT 3 cut(s) 60, 95, 307
TaiI ACGT 3 cut(s) 155, 389, 446
TaqI TCGA 4 cut(s) 84, 213, 363, 465
TaqII GACCGA 1 cut(s) 530
TauI GCSGC 2 cut(s) 293, 348
Tru1I TTAA 2 cut(s) 26, 709
Tru9I TTAA 2 cut(s) 26, 709
TscAI CASTG 1 cut(s) 63
TseI GCWGC 1 cut(s) 565
TspDTI ATGAA 1 cut(s) 601
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 2 cut(s) 400, 436
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.