Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003569

Physical Location & Seq

Genomic Coordinates Reverse (-)

12397556 .. 12398303

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCTAAAATCCAATGCAAGAACTTCCACTGCTTCCCTAATTTCATCAAATGCCTGCCCACAATCCAAGCTCCACCGGATCAAGCCTCAAACGAATTAGACCACCAAAACCAGCCACCACGTCCCTCTACCACCACATGTACATCTCTTATCATCAAGAACTTCAACTCCCTCTACCATGACTTCAACTTGGTGAACTCATCATCAGATCACTCAACCTTCAAATCCCTCACAGCCTCCTCCTCCTCCGCCGACGATCACTTCTACAACTCCTCCGAAGAATCAGACGCCGACCAGTATTCCCCTCCAGATTTCGCCACCATCTTCGCCTCTCAACGCTTCTTCTTCTCCTCCCCGGGACAATCCAACTCCATCGTCGAGTCTCCAGACACCACCACAAAACCCAAGTCTTCTCACAAAAGAATGTTGGTCACCAAAGGCGTGCAAGTTCCCAAGTATTCCTCAAACCCTTACATGGATTTTCGGCGTGATCATGTTCATGCTACAAGCGATGACATGGAGTATTTACATGAGCTTCTCTTGTGCTACCTTTCGCTCAATCCGACACACGCGCACAAGGACATTATCAGTGCCTTCACCGATCTTGTCATCGGCCTACTGTGTGCTGAAGATTCACCAGCACCTGCACCAGCTTCAGCGGCTGATATGACCGTGAAAAAAAAGCCGGAAACTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

233

Amino Acids

25.82

Weight (kDa)

5.9

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05420 AT1G05420 AT2G32100 AT4G14860
fragaria_vesca	FvH4_1g09620 FvH4_2g23310 FvH4_4g15660
malus_domestica	MD00G1157000.v1.1 MD03G1262500.v1.1 MD11G1283200.v1.1 MD13G1193900.v1.1
prunus_persica	Prupe.1G014600_v2.0.a1 Prupe.8G238800_v2.0.a1
pyrus_communis	pycom11g25070 pycom13g16620 pycom16g16430
rosa_chinensis	RchiOBHm_Chr4g0416131 RchiOBHm_Chr6g0290721
rosa_laevigata	RLG00000008013 RLG00000012185
rosa_multiflora	Rmu_sc0000043.1_g000018 Rmu_sc0000750.1_g000016
rosa_roxburghii	Rroxscaffold_5G00359990 Rroxscaffold_7G00176780
rosa_rugosa	Rorug04G0138900 Rorug06G0214300
rosa_samantha	Rh4AG201200 Rh4BG198400 Rh4CG212400 Rh4DG198600 Rh6BG332400 Rh6DG325600 Rh7BG226200
rosa_wichuraiana	Rw4G017010 Rw6G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	652
Acc36I	ACCTGC	1 cut(s)	652
AccII	CGCG	1 cut(s)	572
AciI	CCGC	2 cut(s)	249, 659
AclWI	GGATC	1 cut(s)	87
AcuI	CTGAAG	2 cut(s)	639, 648
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	475
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	166, 187, 223
AjiI	CACGTC	1 cut(s)	122
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	3 cut(s)	71, 535, 653
AluI	AGCT	3 cut(s)	71, 535, 653
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	87
AlwNI	CAGNNNCTG	2 cut(s)	644, 662
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	1 cut(s)	613
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AspLEI	GCGC	1 cut(s)	574
AsuC2I	CCSGG	2 cut(s)	356, 357
AsuHPI	GGTGA	4 cut(s)	205, 424, 589, 627
AvaI	CYCGRG	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	402
BccI	CCATC	2 cut(s)	329, 380
BclI	TGATCA	1 cut(s)	490
BcnI	CCSGG	2 cut(s)	356, 357
BcoDI	GTCTC	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	652
BisI	GCNGC	1 cut(s)	660
BlsI	GCNGC	1 cut(s)	661
Bme1390I	CCNGG	2 cut(s)	356, 357
BmeT110I	CYCGRG	1 cut(s)	355
BmgBI	CACGTC	1 cut(s)	122
BmrFI	CCNGG	2 cut(s)	356, 357
BpiI	GAAGAC	1 cut(s)	402
BpmI	CTGGAG	2 cut(s)	291, 369
BpuMI	CCSGG	2 cut(s)	356, 357
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	354, 355
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	295
BseDI	CCNNGG	2 cut(s)	354, 355
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	5 cut(s)	229, 232, 235, 262, 340
BsgI	GTGCAG	1 cut(s)	630
Bsh1236I	CGCG	1 cut(s)	572
BshFI	GGCC	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	3 cut(s)	77, 356, 686
BslFI	GGGAC	2 cut(s)	108, 372
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	387
BsmFI	GGGAC	2 cut(s)	108, 372
BsnI	GGCC	1 cut(s)	615
BsoBI	CYCGRG	1 cut(s)	355
Bsp1407I	TGTACA	1 cut(s)	140
Bsp143I	GATC	5 cut(s)	79, 208, 256, 490, 601
BspACI	CCGC	2 cut(s)	249, 659
BspANI	GGCC	1 cut(s)	615
BspFNI	CGCG	1 cut(s)	572
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	1 cut(s)	87
BsrGI	TGTACA	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	2 cut(s)	354, 355
BssMI	GATC	5 cut(s)	79, 208, 256, 490, 601
BssNI	GRCGYC	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	621, 673
BstACI	GRCGYC	1 cut(s)	288
BstAUI	TGTACA	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	56, 443
BstEII	GGTNACC	1 cut(s)	430
BstFNI	CGCG	1 cut(s)	572
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	5 cut(s)	82, 211, 259, 493, 604
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	5 cut(s)	79, 208, 256, 490, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	659
BstNSI	RCATGY	1 cut(s)	141
BstPI	GGTNACC	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	354, 355
BstUI	CGCG	1 cut(s)	572
BstV2I	GAAGAC	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	615
BtgZI	GCGATG	1 cut(s)	525
BtrI	CACGTC	1 cut(s)	122
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	28, 595
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	2 cut(s)	56, 443
CaiI	CAGNNNCTG	2 cut(s)	644, 662
CfoI	GCGC	1 cut(s)	574
Cfr9I	CCCGGG	1 cut(s)	355
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	7 cut(s)	138, 179, 475, 494, 500, 517, 530
CviJI	RGCY	9 cut(s)	71, 86, 115, 236, 535, 615, 653, 662, 685
CviKI_1	RGCY	9 cut(s)	71, 86, 115, 236, 535, 615, 653, 662, 685
CviQI	GTAC	1 cut(s)	141
DpnI	GATC	5 cut(s)	81, 210, 258, 492, 603
DpnII	GATC	5 cut(s)	79, 208, 256, 490, 601
EciI	GGCGGA	1 cut(s)	238
Eco57I	CTGAAG	2 cut(s)	639, 648
Eco88I	CYCGRG	1 cut(s)	355
Eco91I	GGTNACC	1 cut(s)	430
EcoO65I	GGTNACC	1 cut(s)	430
FaeI	CATG	7 cut(s)	141, 182, 478, 497, 503, 520, 533
FaiI	YATR	8 cut(s)	139, 180, 476, 495, 501, 518, 531, 668
FaqI	GGGAC	2 cut(s)	108, 372
FatI	CATG	7 cut(s)	137, 178, 474, 493, 499, 516, 529
FbaI	TGATCA	1 cut(s)	490
Fnu4HI	GCNGC	1 cut(s)	660
Fsp4HI	GCNGC	1 cut(s)	660
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	1 cut(s)	660
GsuI	CTGGAG	2 cut(s)	291, 369
HaeIII	GGCC	1 cut(s)	615
HapII	CCGG	3 cut(s)	77, 356, 686
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	574
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	7 cut(s)	141, 182, 478, 497, 503, 520, 533
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HinfI	GANTC	3 cut(s)	281, 380, 632
HpaII	CCGG	3 cut(s)	77, 356, 686
HphI	GGTGA	4 cut(s)	205, 424, 589, 627
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	4 cut(s)	208, 277, 286, 564
Hpy188III	TCNNGA	3 cut(s)	157, 308, 386
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	257, 380
HpyAV	CCTTC	2 cut(s)	229, 604
HpyCH4III	ACNGT	2 cut(s)	621, 673
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	18, 445, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	659
HpySE526I	ACGT	1 cut(s)	121
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	7 cut(s)	141, 182, 478, 497, 503, 520, 533
HspAI	GCGC	1 cut(s)	572
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	5 cut(s)	79, 208, 256, 490, 601
LmnI	GCTCC	1 cut(s)	76
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	5 cut(s)	81, 210, 258, 492, 603
MboI	GATC	5 cut(s)	79, 208, 256, 490, 601
MboII	GAAGA	6 cut(s)	290, 316, 334, 337, 402, 641
MluCI	AATT	2 cut(s)	40, 95
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	2 cut(s)	390, 587
MslI	CAYNNNNRTG	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	3 cut(s)	77, 356, 686
MspR9I	CCNGG	2 cut(s)	356, 357
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	1 cut(s)	659
NciI	CCSGG	2 cut(s)	356, 357
NdeII	GATC	5 cut(s)	79, 208, 256, 490, 601
NlaIII	CATG	7 cut(s)	141, 182, 478, 497, 503, 520, 533
NmuCI	GTSAC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	141
PaqCI	CACCTGC	1 cut(s)	652
PciI	ACATGT	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	560
PfeI	GAWTC	2 cut(s)	281, 632
PkrI	GCNGC	1 cut(s)	661
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PscI	ACATGT	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	430
PstNI	CAGNNNCTG	2 cut(s)	644, 662
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	498
SatI	GCNGC	1 cut(s)	660
Sau3AI	GATC	5 cut(s)	79, 208, 256, 490, 601
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	356, 357
SetI	ASST	7 cut(s)	73, 124, 221, 537, 552, 646, 655
SmaI	CCCGGG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	498
Sse9I	AATT	2 cut(s)	40, 95
SsiI	CCGC	2 cut(s)	249, 659
StyD4I	CCNGG	2 cut(s)	354, 355
TaaI	ACNGT	2 cut(s)	621, 673
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	378
TasI	AATT	2 cut(s)	40, 95
TatI	WGTACW	1 cut(s)	140
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	2 cut(s)	281, 632
TscAI	CASTG	2 cut(s)	35, 595
TseFI	GTSAC	1 cut(s)	430
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	2 cut(s)	34, 488
TspMI	CCCGGG	1 cut(s)	355
TspRI	CASTG	2 cut(s)	35, 595
XceI	RCATGY	1 cut(s)	141
XmaI	CCCGGG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.