Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003569

Physical Location & Seq

Genomic Coordinates Forward (+)

40314904 .. 40316649

Gene Structure 1746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCCAAACTCCCATGGAAGAAGAATCTTCACCTCTGGCTCCCCAATTTCAAATGCCTACCCCTAATCACCCAAACCCCACCTCAACCCTCCGACCAAGACCACCCACACCCACAACTCATGATCATCAACAACTTCAACACCCTCTATCACGACTCCAACTCTTCAGATCAATCCACCTCCAAATCCCTCACCGCCTCCGACGACTTCTTCTACTCTTCCTCCTCCGATTCCGAAGCCGCCCCTGACTCCCCGCCTGACTTCGCCACCGTCTTCGCCTCCCAACGCTTCTTCTTCTCCTCACCCGGCCGCTCCAACTCCATCGTCGAGTCGCCGGACACCAAACCCAACAACAACGATTCCTTCGTTACCAGAGGCGTTACTGTTGCCAAGTACTCCTCAAATCCTCACTTGGATTTCCGAAATTCCATGGAGGAAATGCTCGAAGCTAGAGATAGAGATCGTATAGACAATAAAAATAGAGCTCATAATGTGGTGGATGTGTTGAAAAGCGACTTGGATTATCTACACGAGCTGCTCTTGTGCTACCTTCAGTTAAATCCCGAAGACGCCCACAAGGACATTATCAGTGCCTTCACAGACCTTGTCATTTGCATATTGTCTGCTAATCCGGCAGCTTCAACATCAACGTCGGCCGATGACGATCACAGGCTAGAAGAGGAGGAGGAGATTCAGCGGCAACGTCCGTCGAAGCGAGGGCTTGCTCGGTCGATTGAAAAATCATTAGGGGTCCTCCAAAGGCTTGGATCTACAAGGTTGTTTTGGCAGTATCACTACGTATTGGATGACTTTATGCGGTGGCAGATCTGCCCTCTGACTGCGTGCTTATGTTGGTTAAGGTTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

289

Amino Acids

33.03

Weight (kDa)

5.44

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	133 - 205	2e-15	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05420 AT1G05420 AT2G32100 AT4G14860
fragaria_vesca	FvH4_1g09620 FvH4_2g23310 FvH4_4g15660
malus_domestica	MD00G1157000.v1.1 MD03G1262500.v1.1 MD11G1283200.v1.1 MD13G1193900.v1.1
prunus_persica	Prupe.1G014600_v2.0.a1 Prupe.8G238800_v2.0.a1
pyrus_communis	pycom11g25070 pycom13g16620 pycom16g16430
rosa_chinensis	RchiOBHm_Chr4g0416131 RchiOBHm_Chr6g0290721
rosa_laevigata	RLG00000008013 RLG00000012185
rosa_multiflora	Rmu_sc0000043.1_g000018 Rmu_sc0000750.1_g000016
rosa_roxburghii	Rroxscaffold_5G00359990 Rroxscaffold_7G00176780
rosa_rugosa	Rorug04G0138900 Rorug06G0214300
rosa_samantha	Rh4AG201200 Rh4BG198400 Rh4CG212400 Rh4DG198600 Rh6BG332400 Rh6DG325600 Rh7BG226200
rosa_wichuraiana	Rw4G017010 Rw6G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	312
AciI	CCGC	6 cut(s)	195, 240, 254, 310, 697, 817
AclWI	GGATC	1 cut(s)	775
AcoI	YGGCCR	2 cut(s)	307, 654
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	2 cut(s)	150, 536
AcyI	GRCGYC	1 cut(s)	570
AfaI	GTAC	1 cut(s)	395
AgsI	TTSAA	5 cut(s)	52, 139, 508, 642, 737
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AluBI	AGCT	4 cut(s)	449, 485, 535, 638
AluI	AGCT	4 cut(s)	449, 485, 535, 638
Alw21I	GWGCWC	1 cut(s)	487
AlwI	GGATC	1 cut(s)	775
AoxI	GGCC	2 cut(s)	307, 654
ApeKI	GCWGC	2 cut(s)	535, 635
ApoI	RAATTY	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	751
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	4 cut(s)	23, 61, 184, 294
AvaII	GGWCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	487
BauI	CACGAG	1 cut(s)	530
BbsI	GAAGAC	2 cut(s)	265, 573
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	2 cut(s)	522, 647
BccI	CCATC	1 cut(s)	329
BclI	TGATCA	1 cut(s)	123
BcnI	CCSGG	1 cut(s)	306
BfaI	CTAG	2 cut(s)	450, 674
BglII	AGATCT	1 cut(s)	825
BisI	GCNGC	5 cut(s)	240, 310, 536, 636, 698
BlsI	GCNGC	5 cut(s)	241, 311, 537, 637, 699
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	751
BmgT120I	GGNCC	1 cut(s)	751
BmiI	GGNNCC	2 cut(s)	41, 752
BmrFI	CCNGG	1 cut(s)	306
BpiI	GAAGAC	2 cut(s)	265, 573
BpuMI	CCSGG	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	799
BsaBI	GATNNNNATC	2 cut(s)	459, 663
BsaHI	GRCGYC	1 cut(s)	570
BsaJI	CCNNGG	2 cut(s)	14, 429
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bse8I	GATNNNNATC	2 cut(s)	459, 663
BseDI	CCNNGG	2 cut(s)	14, 429
BseGI	GGATG	2 cut(s)	505, 811
BseJI	GATNNNNATC	2 cut(s)	459, 663
BseRI	GAGGAG	6 cut(s)	214, 289, 388, 695, 698, 701
BseX3I	CGGCCG	2 cut(s)	307, 654
BseXI	GCAGC	2 cut(s)	522, 647
Bsh1285I	CGRYCG	3 cut(s)	310, 657, 731
BshFI	GGCC	2 cut(s)	309, 656
BsiEI	CGRYCG	3 cut(s)	310, 657, 731
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	3 cut(s)	306, 335, 632
BsnI	GGCC	2 cut(s)	309, 656
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	6 cut(s)	123, 169, 460, 664, 767, 825
Bsp19I	CCATGG	2 cut(s)	14, 429
BspACI	CCGC	6 cut(s)	195, 240, 254, 310, 697, 817
BspANI	GGCC	2 cut(s)	309, 656
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	41, 752
BspPI	GGATC	1 cut(s)	775
BsrBI	CCGCTC	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	14, 429
BssMI	GATC	6 cut(s)	123, 169, 460, 664, 767, 825
BssNI	GRCGYC	1 cut(s)	570
BssSI	CACGAG	1 cut(s)	530
BssT1I	CCWWGG	2 cut(s)	14, 429
Bst2BI	CACGAG	1 cut(s)	530
Bst4CI	ACNGT	2 cut(s)	271, 385
Bst6I	CTCTTC	3 cut(s)	169, 223, 672
BstACI	GRCGYC	1 cut(s)	570
BstBAI	YACGTR	1 cut(s)	799
BstC8I	GCNNGC	2 cut(s)	723, 844
BstDSI	CCRYGG	2 cut(s)	14, 429
BstF5I	GGATG	2 cut(s)	505, 811
BstKTI	GATC	6 cut(s)	126, 172, 463, 667, 770, 828
BstMBI	GATC	6 cut(s)	123, 169, 460, 664, 767, 825
BstMCI	CGRYCG	3 cut(s)	310, 657, 731
BstMWI	GCNNNNNNNGC	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	304
BstSNI	TACGTA	1 cut(s)	799
BstV1I	GCAGC	2 cut(s)	522, 647
BstV2I	GAAGAC	2 cut(s)	265, 573
BstX2I	RGATCY	2 cut(s)	767, 825
BstXI	CCANNNNNNTGG	1 cut(s)	764
BstYI	RGATCY	2 cut(s)	767, 825
BstZI	CGGCCG	2 cut(s)	307, 654
BsuRI	GGCC	2 cut(s)	309, 656
BtgI	CCRYGG	2 cut(s)	14, 429
BtsCI	GGATG	2 cut(s)	505, 811
BtsIMutI	CAGTG	1 cut(s)	595
Cac8I	GCNNGC	2 cut(s)	723, 844
CciI	TCATGA	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	751
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	3 cut(s)	15, 121, 430
CviQI	GTAC	1 cut(s)	394
DpnI	GATC	6 cut(s)	125, 171, 462, 666, 769, 827
DpnII	GATC	6 cut(s)	123, 169, 460, 664, 767, 825
EaeI	YGGCCR	2 cut(s)	307, 654
EagI	CGGCCG	2 cut(s)	307, 654
Eam1104I	CTCTTC	3 cut(s)	169, 223, 672
EarI	CTCTTC	3 cut(s)	169, 223, 672
Ecl136II	GAGCTC	1 cut(s)	485
EclXI	CGGCCG	2 cut(s)	307, 654
Eco105I	TACGTA	1 cut(s)	799
Eco130I	CCWWGG	2 cut(s)	14, 429
Eco24I	GRGCYC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	751
Eco52I	CGGCCG	2 cut(s)	307, 654
Eco53kI	GAGCTC	1 cut(s)	485
Eco57I	CTGAAG	2 cut(s)	150, 536
EcoICRI	GAGCTC	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	751
EcoT14I	CCWWGG	2 cut(s)	14, 429
EcoT38I	GRGCYC	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	14, 429
FaeI	CATG	3 cut(s)	18, 124, 433
FaiI	YATR	9 cut(s)	16, 122, 431, 467, 489, 617, 815, 850, 868
FatI	CATG	3 cut(s)	14, 120, 429
FauI	CCCGC	1 cut(s)	261
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	5 cut(s)	240, 310, 536, 636, 698
FokI	GGATG	2 cut(s)	512, 818
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	5 cut(s)	240, 310, 536, 636, 698
FspBI	CTAG	2 cut(s)	450, 674
GluI	GCNGC	5 cut(s)	240, 310, 536, 636, 698
HaeIII	GGCC	2 cut(s)	309, 656
HapII	CCGG	3 cut(s)	306, 335, 632
HgaI	GACGC	1 cut(s)	578
Hin1I	GRCGYC	1 cut(s)	570
Hin1II	CATG	3 cut(s)	18, 124, 433
HinfI	GANTC	7 cut(s)	25, 155, 230, 248, 329, 359, 691
HpaII	CCGG	3 cut(s)	306, 335, 632
HphI	GGTGA	4 cut(s)	23, 61, 184, 294
Hpy188I	TCNGA	7 cut(s)	94, 169, 202, 229, 235, 422, 837
Hpy188III	TCNNGA	3 cut(s)	121, 152, 563
Hpy99I	CGWCG	4 cut(s)	206, 329, 655, 712
HpyAV	CCTTC	3 cut(s)	373, 560, 604
HpyCH4III	ACNGT	2 cut(s)	271, 385
HpyCH4IV	ACGT	3 cut(s)	650, 703, 798
HpyCH4V	TGCA	1 cut(s)	615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	632
HpySE526I	ACGT	3 cut(s)	650, 703, 798
Hsp92I	GRCGYC	1 cut(s)	570
Hsp92II	CATG	3 cut(s)	18, 124, 433
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	6 cut(s)	123, 169, 460, 664, 767, 825
LmnI	GCTCC	2 cut(s)	45, 317
LpnPI	CCDG	8 cut(s)	22, 258, 270, 319, 348, 385, 645, 655
Lsp1109I	GCAGC	2 cut(s)	522, 647
MaeI	CTAG	2 cut(s)	450, 674
MaeII	ACGT	3 cut(s)	650, 703, 798
MaeIII	GTNAC	2 cut(s)	367, 379
MalI	GATC	6 cut(s)	125, 171, 462, 666, 769, 827
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	6 cut(s)	123, 169, 460, 664, 767, 825
MflI	RGATCY	2 cut(s)	767, 825
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	2 cut(s)	46, 424
MlyI	GAGTC	3 cut(s)	149, 242, 338
MmeI	TCCRAC	4 cut(s)	117, 183, 225, 339
MseI	TTAA	2 cut(s)	557, 857
MspA1I	CMGCKG	1 cut(s)	697
MspI	CCGG	3 cut(s)	306, 335, 632
MspR9I	CCNGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	632
NciI	CCSGG	1 cut(s)	306
NcoI	CCATGG	2 cut(s)	14, 429
NdeII	GATC	6 cut(s)	123, 169, 460, 664, 767, 825
NlaIII	CATG	3 cut(s)	18, 124, 433
NlaIV	GGNNCC	2 cut(s)	41, 752
PagI	TCATGA	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PfeI	GAWTC	4 cut(s)	25, 230, 359, 691
PflFI	GACNNNGTC	1 cut(s)	605
PkrI	GCNGC	5 cut(s)	241, 311, 537, 637, 699
PleI	GAGTC	3 cut(s)	149, 242, 337
PpsI	GAGTC	3 cut(s)	149, 242, 337
Ppu21I	YACGTR	1 cut(s)	799
PpuMI	RGGWCCY	1 cut(s)	751
Psp124BI	GAGCTC	1 cut(s)	487
Psp5II	RGGWCCY	1 cut(s)	751
PspN4I	GGNNCC	2 cut(s)	41, 752
PspPI	GGNCC	1 cut(s)	751
PspPPI	RGGWCCY	1 cut(s)	751
PsuI	RGATCY	2 cut(s)	767, 825
PsyI	GACNNNGTC	1 cut(s)	605
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SacI	GAGCTC	1 cut(s)	487
SaqAI	TTAA	2 cut(s)	557, 857
SatI	GCNGC	5 cut(s)	240, 310, 536, 636, 698
Sau3AI	GATC	6 cut(s)	123, 169, 460, 664, 767, 825
Sau96I	GGNCC	1 cut(s)	751
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	3 cut(s)	149, 242, 338
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	487
SinI	GGWCC	1 cut(s)	751
SnaBI	TACGTA	1 cut(s)	799
Sse9I	AATT	2 cut(s)	46, 424
SsiI	CCGC	6 cut(s)	195, 240, 254, 310, 697, 817
SspMI	CTAG	2 cut(s)	450, 674
SstI	GAGCTC	1 cut(s)	487
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	2 cut(s)	14, 429
TaaI	ACNGT	2 cut(s)	271, 385
TaiI	ACGT	3 cut(s)	653, 706, 801
TaqI	TCGA	4 cut(s)	327, 444, 710, 731
TaqII	GACCGA	1 cut(s)	717
TasI	AATT	2 cut(s)	46, 424
TatI	WGTACW	1 cut(s)	393
TauI	GCSGC	3 cut(s)	242, 312, 700
TfiI	GAWTC	4 cut(s)	25, 230, 359, 691
Tru1I	TTAA	2 cut(s)	557, 857
Tru9I	TTAA	2 cut(s)	557, 857
TscAI	CASTG	1 cut(s)	595
TseI	GCWGC	2 cut(s)	535, 635
TspGWI	ACGGA	1 cut(s)	696
TspRI	CASTG	1 cut(s)	595
Tth111I	GACNNNGTC	1 cut(s)	605
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	1 cut(s)	424
XspI	CTAG	2 cut(s)	450, 674
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.