Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003569

Physical Location & Seq

Genomic Coordinates Reverse (-)

1074851 .. 1075546

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G014600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTCCAAAATCATGTGGAAGAATTTATGCTTCCCCAATTTCATCAAATGCCTACCCACAATCCAAGCTCCACCTGATCAACCCTCTAACAAAAACTCACCTTCCTCTCCCTCCACCACCACATGTACATCTCTCCTCATCAAAAACTTCAACACCCTCTATGACTTCAACTTGATCAACTCCTCCTCCTCCTCCTCCTCCGCCGACGACGTCCATACTTCCTCCTCTGATTCAGACTCGGACCTCTCCCCTCCCGATTTCGCCACCATCTTTGCCTCCCAACGCTTCTTCTTCTCCTCTCCGGGACGCTCCAACTCCATCACCGAGTCTCCACACACAACCACCACAAAACCCAACAAGCCTCCTCACAAAACAACGTTGGTCACCAAAGGAGTGCGCGTTCGCAAGTTCTCCTCAAATCCTTACTTCGACTTCAGGCGCTCCATGGAGGAAATGCTTGAAGCTAATAGAGATCATCACATGTTGGTGGGCCATGATCATCATCATCATAGCACAAGTGATGACGTGGAGTATCTACATGAGCTGCTTTTGTGCTACCTCTCACTCAATCCCAAACATGCCCACAAGGACATTATCAGCGCCTTCACTGACCTTGTCATCTGCCTGCTGTCAGCTAACTCGTCAGCGCCAGCTTCAGCCGCCGATGACCGTCGAGAAAACCCCAAAACGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

232

Amino Acids

25.78

Weight (kDa)

6.69

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05420 AT1G05420 AT2G32100 AT4G14860
fragaria_vesca	FvH4_1g09620 FvH4_2g23310 FvH4_4g15660
malus_domestica	MD00G1157000.v1.1 MD03G1262500.v1.1 MD11G1283200.v1.1 MD13G1193900.v1.1
prunus_persica	Prupe.1G014600_v2.0.a1 Prupe.8G238800_v2.0.a1
pyrus_communis	pycom11g25070 pycom13g16620 pycom16g16430
rosa_chinensis	RchiOBHm_Chr4g0416131 RchiOBHm_Chr6g0290721
rosa_laevigata	RLG00000008013 RLG00000012185
rosa_multiflora	Rmu_sc0000043.1_g000018 Rmu_sc0000750.1_g000016
rosa_roxburghii	Rroxscaffold_5G00359990 Rroxscaffold_7G00176780
rosa_rugosa	Rorug04G0138900 Rorug06G0214300
rosa_samantha	Rh4AG201200 Rh4BG198400 Rh4CG212400 Rh4DG198600 Rh6BG332400 Rh6DG325600 Rh7BG226200
rosa_wichuraiana	Rw4G017010 Rw6G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	213
AccII	CGCG	1 cut(s)	399
AciI	CCGC	2 cut(s)	201, 660
AclI	AACGTT	1 cut(s)	377
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	2 cut(s)	418, 639
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	127
AflIII	ACRYGT	2 cut(s)	122, 480
AgsI	TTSAA	3 cut(s)	151, 169, 461
AjiI	CACGTC	1 cut(s)	526
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
AluBI	AGCT	5 cut(s)	68, 464, 544, 635, 653
AluI	AGCT	5 cut(s)	68, 464, 544, 635, 653
Alw26I	GTCTC	1 cut(s)	333
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	1 cut(s)	544
ApoI	RAATTY	1 cut(s)	22
AspLEI	GCGC	4 cut(s)	399, 441, 602, 649
AspS9I	GGNCC	2 cut(s)	241, 490
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	3 cut(s)	90, 313, 376
AvaII	GGWCC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	531
BccI	CCATC	2 cut(s)	275, 326
BclI	TGATCA	3 cut(s)	76, 174, 496
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	333
BfoI	RGCGCY	3 cut(s)	442, 603, 650
BisI	GCNGC	2 cut(s)	545, 660
BlsI	GCNGC	2 cut(s)	546, 661
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	241
BmgBI	CACGTC	1 cut(s)	526
BmgT120I	GGNCC	2 cut(s)	241, 490
BmrFI	CCNGG	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	444
BsaXI	ACNNNNNCTCC	6 cut(s)	170, 200, 313, 343, 384, 414
Bse8I	GATNNNNATC	1 cut(s)	501
BseDI	CCNNGG	1 cut(s)	444
BseJI	GATNNNNATC	1 cut(s)	501
BseXI	GCAGC	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	333
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	492
Bsp1407I	TGTACA	1 cut(s)	125
Bsp143I	GATC	4 cut(s)	76, 174, 472, 496
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	2 cut(s)	201, 660
BspANI	GGCC	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	399
BsrGI	TGTACA	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	4 cut(s)	76, 174, 472, 496
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	671
BstACI	GRCGYC	1 cut(s)	210
BstAUI	TGTACA	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	626, 651
BstDSI	CCRYGG	1 cut(s)	444
BstEII	GGTNACC	1 cut(s)	382
BstFNI	CGCG	1 cut(s)	399
BstH2I	RGCGCY	3 cut(s)	442, 603, 650
BstHHI	GCGC	4 cut(s)	399, 441, 602, 649
BstKTI	GATC	4 cut(s)	79, 177, 475, 499
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	4 cut(s)	76, 174, 472, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	659
BstNSI	RCATGY	3 cut(s)	126, 484, 581
BstPI	GGTNACC	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	301
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	492
BtgI	CCRYGG	1 cut(s)	444
BtrI	CACGTC	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	606
Cac8I	GCNNGC	2 cut(s)	626, 651
CfoI	GCGC	4 cut(s)	399, 441, 602, 649
Cfr13I	GGNCC	2 cut(s)	241, 490
CseI	GACGC	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	126
CspCI	CAANNNNNGTGG	2 cut(s)	253, 288
CviAII	CATG	7 cut(s)	13, 123, 445, 481, 494, 539, 578
CviJI	RGCY	8 cut(s)	68, 361, 464, 492, 544, 635, 653, 659
CviKI_1	RGCY	8 cut(s)	68, 361, 464, 492, 544, 635, 653, 659
CviQI	GTAC	1 cut(s)	126
DpnI	GATC	4 cut(s)	78, 176, 474, 498
DpnII	GATC	4 cut(s)	76, 174, 472, 496
EciI	GGCGGA	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	241
Eco57I	CTGAAG	2 cut(s)	418, 639
Eco91I	GGTNACC	1 cut(s)	382
EcoO65I	GGTNACC	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	7 cut(s)	16, 126, 448, 484, 497, 542, 581
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	7 cut(s)	12, 122, 444, 480, 493, 538, 577
FbaI	TGATCA	3 cut(s)	76, 174, 496
Fnu4HI	GCNGC	2 cut(s)	545, 660
Fsp4HI	GCNGC	2 cut(s)	545, 660
GlaI	GCGC	4 cut(s)	398, 440, 601, 648
GluI	GCNGC	2 cut(s)	545, 660
HaeII	RGCGCY	3 cut(s)	442, 603, 650
HaeIII	GGCC	1 cut(s)	492
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	1 cut(s)	315
HhaI	GCGC	4 cut(s)	399, 441, 602, 649
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	7 cut(s)	16, 126, 448, 484, 497, 542, 581
Hin6I	GCGC	4 cut(s)	397, 439, 600, 647
HinP1I	GCGC	4 cut(s)	397, 439, 600, 647
HinfI	GANTC	3 cut(s)	230, 236, 326
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	3 cut(s)	90, 313, 376
Hpy188I	TCNGA	3 cut(s)	229, 235, 241
Hpy188III	TCNNGA	2 cut(s)	254, 674
Hpy99I	CGWCG	3 cut(s)	209, 212, 675
HpyAV	CCTTC	2 cut(s)	111, 613
HpyCH4III	ACNGT	1 cut(s)	671
HpyCH4IV	ACGT	3 cut(s)	210, 377, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	659
HpySE526I	ACGT	3 cut(s)	210, 377, 525
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	7 cut(s)	16, 126, 448, 484, 497, 542, 581
HspAI	GCGC	4 cut(s)	397, 439, 600, 647
Ksp22I	TGATCA	3 cut(s)	76, 174, 496
Kzo9I	GATC	4 cut(s)	76, 174, 472, 496
LmnI	GCTCC	3 cut(s)	73, 314, 446
LpnPI	CCDG	5 cut(s)	87, 315, 421, 638, 663
Lsp1109I	GCAGC	1 cut(s)	531
MaeII	ACGT	3 cut(s)	210, 377, 525
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	4 cut(s)	78, 176, 474, 498
MboI	GATC	4 cut(s)	76, 174, 472, 496
MboII	GAAGA	3 cut(s)	31, 280, 283
MluCI	AATT	2 cut(s)	22, 37
MlyI	GAGTC	2 cut(s)	230, 335
MmeI	TCCRAC	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	485
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	659
NciI	CCSGG	1 cut(s)	303
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	4 cut(s)	76, 174, 472, 496
NlaIII	CATG	7 cut(s)	16, 126, 448, 484, 497, 542, 581
NmuCI	GTSAC	1 cut(s)	382
NspI	RCATGY	3 cut(s)	126, 484, 581
PciI	ACATGT	2 cut(s)	122, 480
PfeI	GAWTC	1 cut(s)	230
PflFI	GACNNNGTC	2 cut(s)	209, 614
PfoI	TCCNGGA	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	546, 661
PleI	GAGTC	2 cut(s)	230, 334
PpsI	GAGTC	2 cut(s)	230, 334
PscI	ACATGT	2 cut(s)	122, 480
Psp1406I	AACGTT	1 cut(s)	377
PspEI	GGTNACC	1 cut(s)	382
PspPI	GGNCC	2 cut(s)	241, 490
PsyI	GACNNNGTC	2 cut(s)	209, 614
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	485
SatI	GCNGC	2 cut(s)	545, 660
Sau3AI	GATC	4 cut(s)	76, 174, 472, 496
Sau96I	GGNCC	2 cut(s)	241, 490
SchI	GAGTC	2 cut(s)	230, 335
ScrFI	CCNGG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	485
Sse9I	AATT	2 cut(s)	22, 37
SsiI	CCGC	2 cut(s)	201, 660
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	671
TaiI	ACGT	3 cut(s)	213, 380, 528
TaqI	TCGA	2 cut(s)	429, 673
TasI	AATT	2 cut(s)	22, 37
TatI	WGTACW	1 cut(s)	125
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	1 cut(s)	230
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	544
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	613
Tth111I	GACNNNGTC	2 cut(s)	209, 614
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	3 cut(s)	126, 484, 581
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.