FvH4_1g09620

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003569
Physical Location & Seq
Reverse (-)
5152642 .. 5152863
222 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09620.t1

Sequence Viewer

Length: 222 bp
ATGGTGGAGGCGCGTGAGCACCAGACGGAGGACGAGAGCGTGAAGGTCAAATCTAACTGGGAGTTCCTGCATGAGCTGCTCCTGTGTTATCTCGCGCTCAACCCTAAGAGCACTCACAAGTTCATCATCGGCGCATTTTCCGATCTCCTCGTCAGTCTCCTCCCCTCACCCAAAGATCCCGAGTTCACCGCCGGCGTCTGCGAGATTTCCCGGTGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

74

Amino Acids

8.25

Weight (kDa)

5.2

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 15 - 53 6.2e-15 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 13, 95
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 28
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw21I GWGCWC 2 cut(s) 21, 113
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 76
AspLEI GCGC 3 cut(s) 13, 97, 134
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 2 cut(s) 159, 178
AvaI CYCGRG 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 21, 113
BbvI GCAGC 1 cut(s) 63
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 161
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 211
BmrI ACTGGG 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 2 cut(s) 137, 149
BseXI GCAGC 1 cut(s) 63
Bsh1236I CGCG 2 cut(s) 13, 95
BsiHKAI GWGCWC 2 cut(s) 21, 113
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 2 cut(s) 192, 211
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 21, 113
Bsp143I GATC 2 cut(s) 142, 175
BspACI CCGC 1 cut(s) 189
BspFNI CGCG 2 cut(s) 13, 95
BspPI GGATC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 191
BssMI GATC 2 cut(s) 142, 175
BssNI GRCGYC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 105
BstFNI CGCG 2 cut(s) 13, 95
BstHHI GCGC 3 cut(s) 13, 97, 134
BstKTI GATC 2 cut(s) 145, 178
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 142, 175
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 209
BstUI CGCG 2 cut(s) 13, 95
BstV1I GCAGC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 193
CfoI GCGC 3 cut(s) 13, 97, 134
Cfr10I RCCGGY 1 cut(s) 191
CseI GACGC 1 cut(s) 184
CviAII CATG 1 cut(s) 71
CviJI RGCY 1 cut(s) 76
CviKI_1 RGCY 1 cut(s) 76
DdeI CTNAG 1 cut(s) 105
DpnI GATC 2 cut(s) 144, 177
DpnII GATC 2 cut(s) 142, 175
Eco88I CYCGRG 1 cut(s) 179
FaeI CATG 1 cut(s) 74
FaiI YATR 1 cut(s) 72
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 77
GlaI GCGC 3 cut(s) 12, 96, 133
GluI GCNGC 1 cut(s) 77
HapII CCGG 2 cut(s) 192, 211
HgaI GACGC 1 cut(s) 184
HhaI GCGC 3 cut(s) 13, 97, 134
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 74
Hin6I GCGC 3 cut(s) 11, 95, 132
HinP1I GCGC 3 cut(s) 11, 95, 132
HpaII CCGG 2 cut(s) 192, 211
HphI GGTGA 2 cut(s) 159, 178
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 186
HpyAV CCTTC 1 cut(s) 37
HpyCH4V TGCA 2 cut(s) 70, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 74
HspAI GCGC 3 cut(s) 11, 95, 132
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Kzo9I GATC 2 cut(s) 142, 175
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 5 cut(s) 35, 43, 80, 95, 205
Lsp1109I GCAGC 1 cut(s) 63
MalI GATC 2 cut(s) 144, 177
MboI GATC 2 cut(s) 142, 175
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 2 cut(s) 21, 113
MnlI CCTC 4 cut(s) 22, 158, 170, 175
MreI CGCCGGCG 1 cut(s) 191
MroNI GCCGGC 1 cut(s) 191
MseI TTAA 1 cut(s) 220
MspI CCGG 2 cut(s) 192, 211
MspR9I CCNGG 1 cut(s) 211
MvnI CGCG 2 cut(s) 13, 95
MwoI GCNNNNNNNGC 1 cut(s) 76
NaeI GCCGGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 211
NdeII GATC 2 cut(s) 142, 175
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 78
PsuI RGATCY 1 cut(s) 175
SaqAI TTAA 1 cut(s) 220
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 2 cut(s) 142, 175
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 2 cut(s) 21, 113
SetI ASST 2 cut(s) 48, 78
SgrAI CRCCGGYG 1 cut(s) 191
SsiI CCGC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 209
Tru1I TTAA 1 cut(s) 220
Tru9I TTAA 1 cut(s) 220
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 112
TspGWI ACGGA 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.