Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003569

Physical Location & Seq

Genomic Coordinates Forward (+)

8516372 .. 8517130

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCTAATTTTCTAAGGAAGAAGCTACACCTCTGTTTCTCCTCTTCCGGTGGTCTCTCACCGTCGATTCCTTCCTCTCCGATCATCGTATCAAATCACAACGCTCAATCTCATCCTCATCACACTCCCTCAATCTTCATCAACAACTTCAACTCTCTTTACGATCAGCTCTCTGTTTCTTCTCCCCTCCACCGCCGTCACAGTTCCGAGAACCCCGCCGGGGTGTTCTCCACTAACCGCCGCGAAGAAGAAGAAGAAGACGAAACCACCACCTCCGTTTCGAAGCTTTTAAGCGGCGGGACGGCGATAATGAAGCACATAGAGTCACCGGATCCGTACAGAGATTTCGGAAGATCGATGAGAGAGATGGTGGAAGCTAGAGATTTAACGAGAGACGTCGTCGCCGATAGAGAATACTTGCACGAACTGTTATTCTGTTATCTCTATTTGAATCCGAAACATACTCACAGATTCATCGTCTCTGCTTTCGCCGATACGCTCCTCTGGTTACTTTCTCCGTCGCCGTCGCCAGAGCATTTTTTATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

182

Amino Acids

20.68

Weight (kDa)

6.29

Isoelectric Point (pI)

64.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	109 - 169	1.1e-21	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05420 AT1G05420 AT2G32100 AT4G14860
fragaria_vesca	FvH4_1g09620 FvH4_2g23310 FvH4_4g15660
malus_domestica	MD00G1157000.v1.1 MD03G1262500.v1.1 MD11G1283200.v1.1 MD13G1193900.v1.1
prunus_persica	Prupe.1G014600_v2.0.a1 Prupe.8G238800_v2.0.a1
pyrus_communis	pycom11g25070 pycom13g16620 pycom16g16430
rosa_chinensis	RchiOBHm_Chr4g0416131 RchiOBHm_Chr6g0290721
rosa_laevigata	RLG00000008013 RLG00000012185
rosa_multiflora	Rmu_sc0000043.1_g000018 Rmu_sc0000750.1_g000016
rosa_roxburghii	Rroxscaffold_5G00359990 Rroxscaffold_7G00176780
rosa_rugosa	Rorug04G0138900 Rorug06G0214300
rosa_samantha	Rh4AG201200 Rh4BG198400 Rh4CG212400 Rh4DG198600 Rh6BG332400 Rh6DG325600 Rh7BG226200
rosa_wichuraiana	Rw4G017010 Rw6G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	399
AccII	CGCG	1 cut(s)	243
AciI	CCGC	6 cut(s)	193, 216, 238, 241, 294, 297
AclWI	GGATC	2 cut(s)	326, 339
AcyI	GRCGYC	1 cut(s)	396
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	151, 451
AluBI	AGCT	4 cut(s)	25, 169, 286, 377
AluI	AGCT	4 cut(s)	25, 169, 286, 377
Alw26I	GTCTC	3 cut(s)	59, 387, 484
AlwI	GGATC	2 cut(s)	326, 339
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	51, 318
AsuII	TTCGAA	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	264
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	3 cut(s)	180, 318, 508
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	59, 387, 484
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	2 cut(s)	241, 295
BlsI	GCNGC	2 cut(s)	242, 296
Bme1390I	CCNGG	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	2 cut(s)	47, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
BseCI	ATCGAT	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseRI	GAGGAG	2 cut(s)	31, 491
Bsh1236I	CGCG	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	356
BsiSI	CCGG	3 cut(s)	48, 219, 329
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	3 cut(s)	59, 387, 484
BsmBI	CGTCTC	2 cut(s)	387, 484
BsmFI	GGGAC	1 cut(s)	313
Bso31I	GGTCTC	1 cut(s)	59
Bsp119I	TTCGAA	1 cut(s)	281
Bsp143I	GATC	4 cut(s)	81, 163, 331, 353
BspACI	CCGC	6 cut(s)	193, 216, 238, 241, 294, 297
BspDI	ATCGAT	1 cut(s)	356
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	333
BspPI	GGATC	2 cut(s)	326, 339
BspT104I	TTCGAA	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	4 cut(s)	81, 163, 331, 353
BssNI	GRCGYC	1 cut(s)	396
Bst4CI	ACNGT	3 cut(s)	63, 203, 429
Bst6I	CTCTTC	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	396
BstBI	TTCGAA	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	4 cut(s)	84, 166, 334, 356
BstMAI	GTCTC	3 cut(s)	59, 387, 484
BstMBI	GATC	4 cut(s)	81, 163, 331, 353
BstSCI	CCNGG	1 cut(s)	218
BstUI	CGCG	1 cut(s)	243
BstV2I	GAAGAC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	356
BsuTUI	ATCGAT	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	112
ClaI	ATCGAT	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	337
CviJI	RGCY	4 cut(s)	25, 169, 286, 377
CviKI_1	RGCY	4 cut(s)	25, 169, 286, 377
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	4 cut(s)	83, 165, 333, 355
DpnII	GATC	4 cut(s)	81, 163, 331, 353
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	59
Esp3I	CGTCTC	2 cut(s)	387, 484
FaiI	YATR	2 cut(s)	320, 462
FaqI	GGGAC	1 cut(s)	313
FauI	CCCGC	2 cut(s)	223, 290
Fnu4HI	GCNGC	2 cut(s)	241, 295
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	2 cut(s)	241, 295
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	2 cut(s)	241, 295
HapII	CCGG	3 cut(s)	48, 219, 329
Hin1I	GRCGYC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	4 cut(s)	67, 323, 451, 471
HpaII	CCGG	3 cut(s)	48, 219, 329
HphI	GGTGA	2 cut(s)	51, 318
Hpy188I	TCNGA	4 cut(s)	81, 208, 350, 456
Hpy99I	CGWCG	5 cut(s)	67, 401, 404, 523, 529
HpyAV	CCTTC	1 cut(s)	81
HpyCH4III	ACNGT	3 cut(s)	63, 203, 429
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	1 cut(s)	421
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	1 cut(s)	396
Kzo9I	GATC	4 cut(s)	81, 163, 331, 353
LmnI	GCTCC	1 cut(s)	504
LpnPI	CCDG	5 cut(s)	61, 232, 342, 490, 543
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	3 cut(s)	197, 324, 507
MalI	GATC	4 cut(s)	83, 165, 333, 355
MboI	GATC	4 cut(s)	81, 163, 331, 353
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	8 cut(s)	41, 52, 85, 126, 139, 197, 283, 512
MseI	TTAA	2 cut(s)	290, 386
MspI	CCGG	3 cut(s)	48, 219, 329
MspR9I	CCNGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	243
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	4 cut(s)	81, 163, 331, 353
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	2 cut(s)	197, 324
NspV	TTCGAA	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PfeI	GAWTC	3 cut(s)	67, 451, 471
PflFI	GACNNNGTC	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	242, 296
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	1 cut(s)	398
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	290, 386
SatI	GCNGC	2 cut(s)	241, 295
Sau3AI	GATC	4 cut(s)	81, 163, 331, 353
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	7 cut(s)	27, 33, 171, 275, 288, 379, 399
SfuI	TTCGAA	1 cut(s)	281
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	6 cut(s)	193, 216, 238, 241, 294, 297
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	3 cut(s)	63, 203, 429
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	3 cut(s)	65, 281, 356
TasI	AATT	1 cut(s)	7
TauI	GCSGC	2 cut(s)	243, 297
TfiI	GAWTC	3 cut(s)	67, 451, 471
Tru1I	TTAA	2 cut(s)	290, 386
Tru9I	TTAA	2 cut(s)	290, 386
TseFI	GTSAC	2 cut(s)	197, 324
Tsp45I	GTSAC	2 cut(s)	197, 324
TspDTI	ATGAA	3 cut(s)	127, 326, 463
TspGWI	ACGGA	3 cut(s)	265, 324, 507
Tth111I	GACNNNGTC	1 cut(s)	398
XspI	CTAG	1 cut(s)	378
ZraI	GACGTC	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.