Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003569

Physical Location & Seq

Genomic Coordinates Reverse (-)

19516466 .. 19517725

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCCAAACTCCCATGGAAGAAGAATCTCCACCTCTGCCTCCCCAATTTCAAATGCCTACCCTTAATCACCCAAAACCCACCTCAACCCTCCGACCATGACCACCCTCACCCAAACCCACCACTCATGATCACCAACAACATCAACAGCCTCTATCATCACGACTCCAACTCCTCAGATCAATCCACCTCCAAATCCCTCACCGCCTCCGACGACTTCTTCTACTCTTCCTCCTCCGACTCCGAAGCCGCCACTGACTCCCCACCTGACTTTGCCACCGTCTTCGCCTCCCAACGCTTCTTCTTCTCCTCCCCCGGTCGCTCCAACTCCATCGTCGAGTCCCCGGACACCAAACCCAACTGCAACGATTCCTTCGTCACCAGAGGCGTTACTGTTGCCAAGTACTCCTCGAATCCTTACTTGGATTTCCGAAAATCCATGGAGGAGATGCTCGAAGCTAGAGATAGAGATCATATAGACAACAAAGATAGAAATCACAATGTGGTGGATGTGTTGAAAAGCGACTTGGATTATCTACACGAGCTGCTCTTGTGCTACCTTCAGTTAAATCCCGGAGACGCCCACAAGGACATTATCAGTGCCTTCACAGACCTTGTCATTTGCATATTGTCAGCTAATCCGGCAGCTTCAACATCATCGTCGGCCGATGACGATCACATAAAAGAAGAGAAGGAGGAGATTCAGCGGCAATGTGCGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

241

Amino Acids

26.88

Weight (kDa)

5.06

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	136 - 208	2.5e-16	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05420 AT1G05420 AT2G32100 AT4G14860
fragaria_vesca	FvH4_1g09620 FvH4_2g23310 FvH4_4g15660
malus_domestica	MD00G1157000.v1.1 MD03G1262500.v1.1 MD11G1283200.v1.1 MD13G1193900.v1.1
prunus_persica	Prupe.1G014600_v2.0.a1 Prupe.8G238800_v2.0.a1
pyrus_communis	pycom11g25070 pycom13g16620 pycom16g16430
rosa_chinensis	RchiOBHm_Chr4g0416131 RchiOBHm_Chr6g0290721
rosa_laevigata	RLG00000008013 RLG00000012185
rosa_multiflora	Rmu_sc0000043.1_g000018 Rmu_sc0000750.1_g000016
rosa_roxburghii	Rroxscaffold_5G00359990 Rroxscaffold_7G00176780
rosa_rugosa	Rorug04G0138900 Rorug06G0214300
rosa_samantha	Rh4AG201200 Rh4BG198400 Rh4CG212400 Rh4DG198600 Rh6BG332400 Rh6DG325600 Rh7BG226200
rosa_wichuraiana	Rw4G017010 Rw6G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	204, 249, 706
AcoI	YGGCCR	1 cut(s)	663
AcuI	CTGAAG	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	579
AdeI	CACNNNGTG	1 cut(s)	502
AfaI	GTAC	1 cut(s)	404
AgsI	TTSAA	3 cut(s)	52, 517, 651
AjuI	GAANNNNNNNTTGG	4 cut(s)	404, 436, 509, 541
AluBI	AGCT	4 cut(s)	458, 544, 635, 647
AluI	AGCT	4 cut(s)	458, 544, 635, 647
Alw26I	GTCTC	1 cut(s)	570
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	2 cut(s)	544, 644
AsuC2I	CCSGG	3 cut(s)	315, 344, 573
AsuHPI	GGTGA	5 cut(s)	61, 101, 124, 193, 370
BauI	CACGAG	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	531, 656
BccI	CCATC	1 cut(s)	338
BclI	TGATCA	1 cut(s)	129
BcnI	CCSGG	3 cut(s)	315, 344, 573
BcoDI	GTCTC	1 cut(s)	570
BfaI	CTAG	1 cut(s)	459
BisI	GCNGC	4 cut(s)	249, 545, 645, 707
BlsI	GCNGC	4 cut(s)	250, 546, 646, 708
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	3 cut(s)	315, 344, 573
BmrFI	CCNGG	3 cut(s)	315, 344, 573
BmsI	GCATC	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	274
BpuMI	CCSGG	3 cut(s)	315, 344, 573
BsaBI	GATNNNNATC	3 cut(s)	468, 492, 672
BsaHI	GRCGYC	1 cut(s)	579
BsaJI	CCNNGG	4 cut(s)	14, 313, 342, 438
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 215, 245
Bse3DI	GCAATG	1 cut(s)	716
Bse8I	GATNNNNATC	3 cut(s)	468, 492, 672
BseDI	CCNNGG	4 cut(s)	14, 313, 342, 438
BseGI	GGATG	1 cut(s)	514
BseJI	GATNNNNATC	3 cut(s)	468, 492, 672
BseMI	GCAATG	1 cut(s)	716
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	6 cut(s)	163, 223, 298, 397, 458, 710
BseX3I	CGGCCG	1 cut(s)	663
BseXI	GCAGC	2 cut(s)	531, 656
Bsh1285I	CGRYCG	2 cut(s)	319, 666
BshFI	GGCC	1 cut(s)	665
BsiEI	CGRYCG	2 cut(s)	319, 666
BsiSI	CCGG	4 cut(s)	315, 344, 573, 641
BslFI	GGGAC	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	570
BsmBI	CGTCTC	1 cut(s)	570
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	665
Bsp143I	GATC	4 cut(s)	129, 178, 469, 673
Bsp19I	CCATGG	2 cut(s)	14, 438
BspACI	CCGC	3 cut(s)	204, 249, 706
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	1 cut(s)	188
BspHI	TCATGA	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	716
BssECI	CCNNGG	4 cut(s)	14, 313, 342, 438
BssMI	GATC	4 cut(s)	129, 178, 469, 673
BssNI	GRCGYC	1 cut(s)	579
BssSI	CACGAG	1 cut(s)	539
BssT1I	CCWWGG	2 cut(s)	14, 438
Bst2BI	CACGAG	1 cut(s)	539
Bst4CI	ACNGT	2 cut(s)	280, 394
Bst6I	CTCTTC	2 cut(s)	232, 681
BstACI	GRCGYC	1 cut(s)	579
BstDEI	CTNAG	1 cut(s)	175
BstDSI	CCRYGG	2 cut(s)	14, 438
BstF5I	GGATG	1 cut(s)	514
BstKTI	GATC	4 cut(s)	132, 181, 472, 676
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	4 cut(s)	129, 178, 469, 673
BstMCI	CGRYCG	2 cut(s)	319, 666
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstSCI	CCNGG	3 cut(s)	313, 342, 571
BstV1I	GCAGC	2 cut(s)	531, 656
BstV2I	GAAGAC	1 cut(s)	274
BstZI	CGGCCG	1 cut(s)	663
BsuRI	GGCC	1 cut(s)	665
BtgI	CCRYGG	2 cut(s)	14, 438
BtsCI	GGATG	1 cut(s)	514
BtsIMutI	CAGTG	2 cut(s)	252, 604
CciI	TCATGA	1 cut(s)	126
CseI	GACGC	2 cut(s)	587, 705
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	4 cut(s)	15, 98, 127, 439
CviJI	RGCY	7 cut(s)	150, 248, 458, 544, 635, 647, 665
CviKI_1	RGCY	7 cut(s)	150, 248, 458, 544, 635, 647, 665
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	4 cut(s)	131, 180, 471, 675
DpnII	GATC	4 cut(s)	129, 178, 469, 673
DraIII	CACNNNGTG	1 cut(s)	502
EaeI	YGGCCR	1 cut(s)	663
EagI	CGGCCG	1 cut(s)	663
Eam1104I	CTCTTC	2 cut(s)	232, 681
EarI	CTCTTC	2 cut(s)	232, 681
EclXI	CGGCCG	1 cut(s)	663
Eco130I	CCWWGG	2 cut(s)	14, 438
Eco52I	CGGCCG	1 cut(s)	663
Eco57I	CTGAAG	1 cut(s)	545
EcoT14I	CCWWGG	2 cut(s)	14, 438
ErhI	CCWWGG	2 cut(s)	14, 438
Esp3I	CGTCTC	1 cut(s)	570
FaeI	CATG	4 cut(s)	18, 101, 130, 442
FaiI	YATR	8 cut(s)	16, 99, 128, 440, 474, 476, 626, 680
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	4 cut(s)	14, 97, 126, 438
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	4 cut(s)	249, 545, 645, 707
FokI	GGATG	1 cut(s)	521
Fsp4HI	GCNGC	4 cut(s)	249, 545, 645, 707
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	4 cut(s)	249, 545, 645, 707
HaeIII	GGCC	1 cut(s)	665
HapII	CCGG	4 cut(s)	315, 344, 573, 641
HgaI	GACGC	2 cut(s)	587, 705
Hin1I	GRCGYC	1 cut(s)	579
Hin1II	CATG	4 cut(s)	18, 101, 130, 442
HinfI	GANTC	8 cut(s)	25, 164, 239, 257, 338, 368, 412, 700
HpaII	CCGG	4 cut(s)	315, 344, 573, 641
HphI	GGTGA	5 cut(s)	61, 101, 124, 193, 370
Hpy188I	TCNGA	6 cut(s)	94, 178, 211, 238, 244, 431
Hpy188III	TCNNGA	2 cut(s)	127, 161
Hpy99I	CGWCG	4 cut(s)	215, 338, 664, 721
HpyAV	CCTTC	4 cut(s)	382, 569, 613, 685
HpyCH4III	ACNGT	2 cut(s)	280, 394
HpyCH4V	TGCA	2 cut(s)	363, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	1 cut(s)	175
Hsp92I	GRCGYC	1 cut(s)	579
Hsp92II	CATG	4 cut(s)	18, 101, 130, 442
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	129, 178, 469, 673
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	6 cut(s)	279, 328, 357, 394, 586, 654
Lsp1109I	GCAGC	2 cut(s)	531, 656
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	1 cut(s)	459
MaeIII	GTNAC	2 cut(s)	376, 388
MalI	GATC	4 cut(s)	131, 180, 471, 675
MboI	GATC	4 cut(s)	129, 178, 469, 673
MboII	GAAGA	8 cut(s)	31, 34, 211, 219, 274, 292, 295, 698
MluCI	AATT	1 cut(s)	46
MlyI	GAGTC	4 cut(s)	158, 233, 251, 347
MmeI	TCCRAC	5 cut(s)	117, 192, 234, 261, 348
MseI	TTAA	2 cut(s)	65, 566
MspA1I	CMGCKG	1 cut(s)	706
MspI	CCGG	4 cut(s)	315, 344, 573, 641
MspR9I	CCNGG	3 cut(s)	315, 344, 573
MwoI	GCNNNNNNNGC	1 cut(s)	641
NciI	CCSGG	3 cut(s)	315, 344, 573
NcoI	CCATGG	2 cut(s)	14, 438
NdeII	GATC	4 cut(s)	129, 178, 469, 673
NlaIII	CATG	4 cut(s)	18, 101, 130, 442
NmuCI	GTSAC	1 cut(s)	376
PagI	TCATGA	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	4 cut(s)	25, 368, 412, 700
PflFI	GACNNNGTC	1 cut(s)	614
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	250, 546, 646, 708
PleI	GAGTC	4 cut(s)	158, 233, 251, 346
PpsI	GAGTC	4 cut(s)	158, 233, 251, 346
PsyI	GACNNNGTC	1 cut(s)	614
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	65, 566
SatI	GCNGC	4 cut(s)	249, 545, 645, 707
Sau3AI	GATC	4 cut(s)	129, 178, 469, 673
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	4 cut(s)	158, 233, 251, 347
ScrFI	CCNGG	3 cut(s)	315, 344, 573
SfaNI	GCATC	1 cut(s)	438
Sse9I	AATT	1 cut(s)	46
SsiI	CCGC	3 cut(s)	204, 249, 706
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	313, 342, 571
StyI	CCWWGG	2 cut(s)	14, 438
TaaI	ACNGT	2 cut(s)	280, 394
TaqI	TCGA	3 cut(s)	336, 410, 453
TasI	AATT	1 cut(s)	46
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	2 cut(s)	251, 709
TfiI	GAWTC	4 cut(s)	25, 368, 412, 700
Tru1I	TTAA	2 cut(s)	65, 566
Tru9I	TTAA	2 cut(s)	65, 566
TscAI	CASTG	2 cut(s)	259, 604
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	544, 644
Tsp45I	GTSAC	1 cut(s)	376
TspRI	CASTG	2 cut(s)	259, 604
Tth111I	GACNNNGTC	1 cut(s)	614
XspI	CTAG	1 cut(s)	459
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.