RLG00000008013

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003569
Physical Location & Seq
Reverse (-)
24254434 .. 24255159
726 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008013

Sequence Viewer

Length: 726 bp
ATGTCCAAACTCCAATGGAAGAAGAATCTTCACCTCTGGCTCCCCAATTTCAAATGCCTACCCCTAATCACCCAAACCCCACCTCAACCCTCCGACCAAGACCACCCTCACCCACACCCACACCCACAACTCATGATCATCAACAACTTCAACACCCTCTATCACGACTCCAACTCTTCAGATCAATCCACCTCCAAATCCCTGACCGCCTCCGACGACTTCTTCTACTCTTCCTCCTCCGATTCCGAACCCAGCCCTGACTCCCCGCCTGACTTCGCCGCCGTCTTCGCCTCCCAACGCTTCTTCTTCTCCTCACCCGGCCGCTCCAACTCCATCGTCGAGTCGCCGGACACCAAACCCAACAACAACGATTCCTTCGTTACCAGAGGCGTTACTGTTGCCAAGTACTCCTCAAATCCTCACTTGGATTTCCGAAATTCCATGGAGGAAATGCTCGAAGCTAGAGATAGAGATCATATAGACAATAAAAATAGAGATCATAATGTGGTGGATGTGTTGAAAAGCGACTTGGATTATCTACACGAGCTGCTCTTGTGCTACCTTCAGTTAAATCCCGAAGACGCCCACAAGGACATTATCAGTGCCTTCACCGACCTTGTCATTTGCATATTGTCTGCTAATCCGGCAGCTTCAACATCAACGTCGGCCGATGACGATCACAGGCTAGAAGAGGAGGTGGAGATTCTGCGGCAACGTCCGTCGTAA

Protein Analysis

242

Amino Acids

27.31

Weight (kDa)

4.99

Isoelectric Point (pI)

56.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 137 - 209 1.3e-15 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 324
AciI CCGC 5 cut(s) 207, 266, 279, 322, 709
AcoI YGGCCR 2 cut(s) 319, 666
AcsI RAATTY 1 cut(s) 436
AcuI CTGAAG 2 cut(s) 162, 548
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 1 cut(s) 407
AgsI TTSAA 4 cut(s) 52, 151, 520, 654
AjuI GAANNNNNNNTTGG 2 cut(s) 512, 544
AluBI AGCT 3 cut(s) 461, 547, 650
AluI AGCT 3 cut(s) 461, 547, 650
AoxI GGCC 2 cut(s) 319, 666
ApeKI GCWGC 2 cut(s) 547, 647
ApoI RAATTY 1 cut(s) 436
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 5 cut(s) 23, 61, 101, 306, 601
BauI CACGAG 1 cut(s) 542
BbsI GAAGAC 2 cut(s) 277, 585
BbvI GCAGC 2 cut(s) 534, 659
BccI CCATC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 266
BclI TGATCA 1 cut(s) 135
BcnI CCSGG 1 cut(s) 318
BfaI CTAG 2 cut(s) 462, 686
BisI GCNGC 5 cut(s) 279, 322, 548, 648, 710
BlsI GCNGC 5 cut(s) 280, 323, 549, 649, 711
BmcAI AGTACT 1 cut(s) 407
Bme1390I CCNGG 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 318
BpiI GAAGAC 2 cut(s) 277, 585
BpuMI CCSGG 1 cut(s) 318
BsaBI GATNNNNATC 2 cut(s) 471, 675
BsaHI GRCGYC 1 cut(s) 582
BsaJI CCNNGG 1 cut(s) 441
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse8I GATNNNNATC 2 cut(s) 471, 675
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 1 cut(s) 517
BseJI GATNNNNATC 2 cut(s) 471, 675
BseRI GAGGAG 4 cut(s) 226, 301, 400, 707
BseX3I CGGCCG 2 cut(s) 319, 666
BseXI GCAGC 2 cut(s) 534, 659
BseYI CCCAGC 1 cut(s) 251
Bsh1285I CGRYCG 2 cut(s) 322, 669
BshFI GGCC 2 cut(s) 321, 668
BsiEI CGRYCG 2 cut(s) 322, 669
BsiSI CCGG 3 cut(s) 318, 347, 644
BsnI GGCC 2 cut(s) 321, 668
Bsp143I GATC 5 cut(s) 135, 181, 472, 496, 676
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 5 cut(s) 207, 266, 279, 322, 709
BspANI GGCC 2 cut(s) 321, 668
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 5 cut(s) 135, 181, 472, 496, 676
BssNI GRCGYC 1 cut(s) 582
BssSI CACGAG 1 cut(s) 542
BssT1I CCWWGG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 542
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 3 cut(s) 181, 235, 684
BstACI GRCGYC 1 cut(s) 582
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 1 cut(s) 517
BstKTI GATC 5 cut(s) 138, 184, 475, 499, 679
BstMBI GATC 5 cut(s) 135, 181, 472, 496, 676
BstMCI CGRYCG 2 cut(s) 322, 669
BstMWI GCNNNNNNNGC 2 cut(s) 287, 644
BstSCI CCNGG 1 cut(s) 316
BstV1I GCAGC 2 cut(s) 534, 659
BstV2I GAAGAC 2 cut(s) 277, 585
BstZI CGGCCG 2 cut(s) 319, 666
BsuRI GGCC 2 cut(s) 321, 668
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 607
CciI TCATGA 1 cut(s) 132
CseI GACGC 1 cut(s) 590
Csp6I GTAC 1 cut(s) 406
CviAII CATG 2 cut(s) 133, 442
CviJI RGCY 8 cut(s) 40, 255, 321, 461, 547, 650, 668, 685
CviKI_1 RGCY 8 cut(s) 40, 255, 321, 461, 547, 650, 668, 685
CviQI GTAC 1 cut(s) 406
DpnI GATC 5 cut(s) 137, 183, 474, 498, 678
DpnII GATC 5 cut(s) 135, 181, 472, 496, 676
EaeI YGGCCR 2 cut(s) 319, 666
EagI CGGCCG 2 cut(s) 319, 666
Eam1104I CTCTTC 3 cut(s) 181, 235, 684
EarI CTCTTC 3 cut(s) 181, 235, 684
EclXI CGGCCG 2 cut(s) 319, 666
Eco130I CCWWGG 1 cut(s) 441
Eco52I CGGCCG 2 cut(s) 319, 666
Eco57I CTGAAG 2 cut(s) 162, 548
EcoT14I CCWWGG 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 2 cut(s) 136, 445
FaiI YATR 6 cut(s) 134, 443, 477, 479, 501, 629
FatI CATG 2 cut(s) 132, 441
FauI CCCGC 1 cut(s) 273
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 5 cut(s) 279, 322, 548, 648, 710
FokI GGATG 1 cut(s) 524
Fsp4HI GCNGC 5 cut(s) 279, 322, 548, 648, 710
FspBI CTAG 2 cut(s) 462, 686
GluI GCNGC 5 cut(s) 279, 322, 548, 648, 710
GsaI CCCAGC 1 cut(s) 255
HaeIII GGCC 2 cut(s) 321, 668
HapII CCGG 3 cut(s) 318, 347, 644
HgaI GACGC 1 cut(s) 590
Hin1I GRCGYC 1 cut(s) 582
Hin1II CATG 2 cut(s) 136, 445
HinfI GANTC 7 cut(s) 25, 167, 242, 260, 341, 371, 703
HpaII CCGG 3 cut(s) 318, 347, 644
HphI GGTGA 5 cut(s) 23, 61, 101, 306, 601
Hpy188I TCNGA 6 cut(s) 94, 181, 214, 241, 247, 434
Hpy188III TCNNGA 3 cut(s) 133, 164, 575
Hpy99I CGWCG 4 cut(s) 218, 341, 667, 724
HpyAV CCTTC 3 cut(s) 385, 572, 616
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 2 cut(s) 662, 715
HpyCH4V TGCA 1 cut(s) 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 644
HpySE526I ACGT 2 cut(s) 662, 715
Hsp92I GRCGYC 1 cut(s) 582
Hsp92II CATG 2 cut(s) 136, 445
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 5 cut(s) 135, 181, 472, 496, 676
LmnI GCTCC 2 cut(s) 45, 329
Lsp1109I GCAGC 2 cut(s) 534, 659
MaeI CTAG 2 cut(s) 462, 686
MaeII ACGT 2 cut(s) 662, 715
MaeIII GTNAC 2 cut(s) 379, 391
MalI GATC 5 cut(s) 137, 183, 474, 498, 678
MbiI CCGCTC 1 cut(s) 324
MboI GATC 5 cut(s) 135, 181, 472, 496, 676
MluCI AATT 2 cut(s) 46, 436
MlyI GAGTC 3 cut(s) 161, 254, 350
MmeI TCCRAC 4 cut(s) 117, 195, 237, 351
MseI TTAA 1 cut(s) 569
MspI CCGG 3 cut(s) 318, 347, 644
MspR9I CCNGG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 287, 644
NciI CCSGG 1 cut(s) 318
NcoI CCATGG 1 cut(s) 441
NdeII GATC 5 cut(s) 135, 181, 472, 496, 676
NlaIII CATG 2 cut(s) 136, 445
NlaIV GGNNCC 1 cut(s) 41
PagI TCATGA 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PfeI GAWTC 4 cut(s) 25, 242, 371, 703
PflFI GACNNNGTC 1 cut(s) 617
PkrI GCNGC 5 cut(s) 280, 323, 549, 649, 711
PleI GAGTC 3 cut(s) 161, 254, 349
PpsI GAGTC 3 cut(s) 161, 254, 349
PspFI CCCAGC 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 41
PsyI GACNNNGTC 1 cut(s) 617
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 5 cut(s) 279, 322, 548, 648, 710
Sau3AI GATC 5 cut(s) 135, 181, 472, 496, 676
ScaI AGTACT 1 cut(s) 407
SchI GAGTC 3 cut(s) 161, 254, 350
ScrFI CCNGG 1 cut(s) 318
Sse9I AATT 2 cut(s) 46, 436
SsiI CCGC 5 cut(s) 207, 266, 279, 322, 709
SspMI CTAG 2 cut(s) 462, 686
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 2 cut(s) 665, 718
TaqI TCGA 2 cut(s) 339, 456
TasI AATT 2 cut(s) 46, 436
TatI WGTACW 1 cut(s) 405
TauI GCSGC 3 cut(s) 281, 324, 712
TfiI GAWTC 4 cut(s) 25, 242, 371, 703
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 1 cut(s) 607
TseI GCWGC 2 cut(s) 547, 647
TspGWI ACGGA 1 cut(s) 708
TspRI CASTG 1 cut(s) 607
Tth111I GACNNNGTC 1 cut(s) 617
XapI RAATTY 1 cut(s) 436
XspI CTAG 2 cut(s) 462, 686
ZrmI AGTACT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.