Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003569

Physical Location & Seq

Genomic Coordinates Forward (+)

34216982 .. 34218411

Gene Structure 1430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0214300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAGTCTCTCCCACACGACGCCCTCCACCACATCTTCTCCCTCCTCCCCCTCCCTCAGATCATGATCTGCCGCTCCGTCAGCAAGCACCTCCACCAAGTCCTCACCTCCCCCTCCTTCATCCACCTCATCTCCACCCACTCCCCTCCCCTCCGCCTCCTCGCCCTCCGCCCTCCCCACCACCGCCACCACCACCTCTCCTCCCCTCCCTCCCTCCACGTCTTCGACCCCGACCTCCACCGCTGGCTCCGCTTCCCCCTCGATTTCCTCCCCTTCCGCTCCCCCCACCCCGTCGCCTCCTCCTCCGGCCTCCTCTACCTCTGGGCCGACTCCCCCGACTCCACCACCAAGTCCCTCGTCGTCTGCAACCCTCTCACCCGCCGCTTCCTCACCTTGCCTCAGCTCGGCTCCGCCTGGTCAAGGCACGGCTCCGTCCTCGTTGACTCCGCCACCCGCGTCATGGTCCTCACCGAGCTCGCCGCGCTTTACTTCTCCGCCACCGCCGGCAACCACTGGCTCAAATTCTCTTCCAATCTTCCCTCCAAGCCCCGCAGCCCGATCCTCGTGGCCGACTCGGTCTTCGCTCTCTGCGACGTCGGCTCGCCGTGGAGGAGCCAGTGGAAGCTTTTCGCCTGCGCCATTTCGAAGCTGAGGAGCTCGCAGACGTGGACGAGGCTCGAGAAGCAGGAGTGGGGGGACGTGTTCGACATTTTGAAACGGCCTCGTTTGGTTCGCGGAAATGGGACCAAGATCTTGATGGTTGGGGGATTGAAGTCTTCGTTTTCGCTGAACTCGGCGTGCTCGACGATTCTGATACTGAGGCTGGATTTGGATAGCTGGGAGTGGGACGAGGCGGGCCGGATGCCGGTGGATATGTTTAAGTGTTTTCAGGAGTGTAGCAAGTTCAAGGTGTTTGGTGGCGGCGACAGGGTTTGTTTTTCGGCTAAGAGATTGGGGAAGTTGGCTTTGTGGGACAATTGTCCGGGGAAAGCAGAGTGGCGGTGGATTGATGGCGTTCCCGGAAGTGGCGATGGGCTTTGCAGGGGGTTTGTTTTTGAGGCCAGGCTCACCCCATTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

360

Amino Acids

40.48

Weight (kDa)

9.5

Isoelectric Point (pI)

59.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	2 - 41	1.9e-08	F-box domain
F-box-like	PF12937	2 - 39	6.5e-07	F-box-like
Beta-prop_KIB1-4	PF03478	83 - 288	3.1e-06	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003569)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05420 AT1G05420 AT2G32100 AT4G14860
fragaria_vesca	FvH4_1g09620 FvH4_2g23310 FvH4_4g15660
malus_domestica	MD00G1157000.v1.1 MD03G1262500.v1.1 MD11G1283200.v1.1 MD13G1193900.v1.1
prunus_persica	Prupe.1G014600_v2.0.a1 Prupe.8G238800_v2.0.a1
pyrus_communis	pycom11g25070 pycom13g16620 pycom16g16430
rosa_chinensis	RchiOBHm_Chr4g0416131 RchiOBHm_Chr6g0290721
rosa_laevigata	RLG00000008013 RLG00000012185
rosa_multiflora	Rmu_sc0000043.1_g000018 Rmu_sc0000750.1_g000016
rosa_roxburghii	Rroxscaffold_5G00359990 Rroxscaffold_7G00176780
rosa_rugosa	Rorug04G0138900 Rorug06G0214300
rosa_samantha	Rh4AG201200 Rh4BG198400 Rh4CG212400 Rh4DG198600 Rh6BG332400 Rh6DG325600 Rh7BG226200
rosa_wichuraiana	Rw4G017010 Rw6G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	597
AccBSI	CCGCTC	2 cut(s)	75, 279
AccII	CGCG	3 cut(s)	456, 482, 735
AclWI	GGATC	1 cut(s)	553
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	1 cut(s)	521
AcyI	GRCGYC	2 cut(s)	21, 594
AfiI	CCNNNNNNNGG	5 cut(s)	404, 420, 460, 865, 1025
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	3 cut(s)	715, 772, 907
AjiI	CACGTC	3 cut(s)	220, 666, 700
AjnI	CCWGG	2 cut(s)	413, 1061
AluBI	AGCT	6 cut(s)	403, 475, 625, 649, 657, 837
AluI	AGCT	6 cut(s)	403, 475, 625, 649, 657, 837
Alw21I	GWGCWC	3 cut(s)	477, 659, 803
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	553
Ama87I	CYCGRG	1 cut(s)	677
AoxI	GGCC	6 cut(s)	307, 324, 567, 719, 856, 1059
ApeKI	GCWGC	1 cut(s)	552
ApoI	RAATTY	1 cut(s)	521
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
Asp700I	GAANNNNTTC	1 cut(s)	626
AspLEI	GCGC	2 cut(s)	484, 638
AspS9I	GGNCC	4 cut(s)	324, 463, 744, 856
AsuC2I	CCSGG	2 cut(s)	984, 1020
AsuHPI	GGTGA	5 cut(s)	97, 367, 382, 460, 1060
AsuII	TTCGAA	1 cut(s)	644
AvaI	CYCGRG	1 cut(s)	677
AvaII	GGWCC	2 cut(s)	463, 744
BanII	GRGCYC	2 cut(s)	477, 659
BauI	CACGAG	1 cut(s)	563
BbsI	GAAGAC	3 cut(s)	214, 571, 768
Bbv12I	GWGCWC	3 cut(s)	477, 659, 803
BbvCI	CCTCAGC	2 cut(s)	399, 650
BbvI	GCAGC	1 cut(s)	564
BccI	CCATC	3 cut(s)	751, 1004, 1025
BceAI	ACGGC	3 cut(s)	442, 589, 734
BciT130I	CCWGG	2 cut(s)	415, 1063
BcnI	CCSGG	2 cut(s)	984, 1020
BcoDI	GTCTC	1 cut(s)	12
BglII	AGATCT	1 cut(s)	750
BisI	GCNGC	5 cut(s)	73, 382, 480, 553, 922
BlsI	GCNGC	5 cut(s)	74, 383, 481, 554, 923
Bme1390I	CCNGG	4 cut(s)	415, 984, 1020, 1063
Bme18I	GGWCC	2 cut(s)	463, 744
BmeT110I	CYCGRG	1 cut(s)	677
BmgBI	CACGTC	3 cut(s)	220, 666, 700
BmgT120I	GGNCC	4 cut(s)	324, 463, 744, 856
BmiI	GGNNCC	5 cut(s)	248, 409, 430, 614, 745
BmrFI	CCNGG	4 cut(s)	415, 984, 1020, 1063
BmsI	GCATC	1 cut(s)	852
BoxI	GACNNNNGTC	1 cut(s)	978
BpiI	GAAGAC	3 cut(s)	214, 571, 768
Bpu10I	CCTNAGC	2 cut(s)	399, 650
Bpu14I	TTCGAA	1 cut(s)	644
BpuMI	CCSGG	2 cut(s)	984, 1020
BsaBI	GATNNNNATC	1 cut(s)	65
BsaHI	GRCGYC	2 cut(s)	21, 594
BsaJI	CCNNGG	2 cut(s)	605, 983
BsaXI	ACNNNNNCTCC	8 cut(s)	23, 53, 116, 146, 182, 185, 212, 215
Bsc4I	CCNNNNNNNGG	5 cut(s)	404, 420, 460, 865, 1025
Bse118I	RCCGGY	2 cut(s)	503, 865
Bse1I	ACTGG	2 cut(s)	518, 616
Bse3DI	GCAATG	1 cut(s)	1073
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	415, 1063
BseDI	CCNNGG	2 cut(s)	605, 983
BseGI	GGATG	2 cut(s)	120, 867
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	5 cut(s)	404, 420, 460, 865, 1025
BseMI	GCAATG	1 cut(s)	1073
BseMII	CTCAG	4 cut(s)	71, 413, 641, 809
BseNI	ACTGG	2 cut(s)	518, 616
BseRI	GAGGAG	8 cut(s)	35, 149, 190, 289, 292, 302, 625, 667
BseXI	GCAGC	1 cut(s)	564
BseYI	CCCAGC	1 cut(s)	837
Bsh1236I	CGCG	3 cut(s)	456, 482, 735
BshFI	GGCC	6 cut(s)	309, 326, 569, 721, 858, 1061
BsiHKAI	GWGCWC	3 cut(s)	477, 659, 803
BsiHKCI	CYCGRG	1 cut(s)	677
BsiSI	CCGG	6 cut(s)	306, 504, 859, 866, 983, 1020
BslFI	GGGAC	5 cut(s)	337, 710, 757, 860, 986
BslI	CCNNNNNNNGG	5 cut(s)	404, 420, 460, 865, 1025
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	5 cut(s)	337, 710, 757, 860, 986
BsnI	GGCC	6 cut(s)	309, 326, 569, 721, 858, 1061
BsoBI	CYCGRG	1 cut(s)	677
Bsp119I	TTCGAA	1 cut(s)	644
Bsp1286I	GDGCHC	3 cut(s)	477, 659, 803
Bsp143I	GATC	4 cut(s)	60, 66, 558, 750
BspANI	GGCC	6 cut(s)	309, 326, 569, 721, 858, 1061
BspCNI	CTCAG	4 cut(s)	70, 412, 642, 810
BspFNI	CGCG	3 cut(s)	456, 482, 735
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	5 cut(s)	248, 409, 430, 614, 745
BspPI	GGATC	1 cut(s)	553
BspT104I	TTCGAA	1 cut(s)	644
BsrBI	CCGCTC	2 cut(s)	75, 279
BsrDI	GCAATG	1 cut(s)	1073
BsrFI	RCCGGY	2 cut(s)	503, 865
BsrI	ACTGG	2 cut(s)	518, 616
BssAI	RCCGGY	2 cut(s)	503, 865
BssECI	CCNNGG	2 cut(s)	605, 983
BssMI	GATC	4 cut(s)	60, 66, 558, 750
BssNI	GRCGYC	2 cut(s)	21, 594
BssSI	CACGAG	1 cut(s)	563
Bst2BI	CACGAG	1 cut(s)	563
Bst2UI	CCWGG	2 cut(s)	415, 1063
Bst6I	CTCTTC	1 cut(s)	532
BstACI	GRCGYC	2 cut(s)	21, 594
BstBI	TTCGAA	1 cut(s)	644
BstC8I	GCNNGC	9 cut(s)	86, 245, 477, 505, 602, 634, 659, 799, 856
BstDEI	CTNAG	5 cut(s)	57, 399, 650, 818, 945
BstDSI	CCRYGG	1 cut(s)	605
BstENI	CCTNNNNNAGG	1 cut(s)	418
BstF5I	GGATG	2 cut(s)	120, 867
BstFNI	CGCG	3 cut(s)	456, 482, 735
BstHHI	GCGC	2 cut(s)	484, 638
BstKTI	GATC	4 cut(s)	63, 69, 561, 753
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	60, 66, 558, 750
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 249, 481, 597, 682
BstNI	CCWGG	2 cut(s)	415, 1063
BstPAI	GACNNNNGTC	1 cut(s)	978
BstSCI	CCNGG	4 cut(s)	413, 982, 1018, 1061
BstUI	CGCG	3 cut(s)	456, 482, 735
BstV1I	GCAGC	1 cut(s)	564
BstV2I	GAAGAC	3 cut(s)	214, 571, 768
BstX2I	RGATCY	1 cut(s)	750
BstYI	RGATCY	1 cut(s)	750
BsuRI	GGCC	6 cut(s)	309, 326, 569, 721, 858, 1061
BtgI	CCRYGG	1 cut(s)	605
BtgZI	GCGATG	1 cut(s)	1044
BtrI	CACGTC	3 cut(s)	220, 666, 700
BtsCI	GGATG	2 cut(s)	120, 867
BtsIMutI	CAGTG	2 cut(s)	511, 623
Cac8I	GCNNGC	9 cut(s)	86, 245, 477, 505, 602, 634, 659, 799, 856
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	2 cut(s)	484, 638
Cfr10I	RCCGGY	2 cut(s)	503, 865
Cfr13I	GGNCC	4 cut(s)	324, 463, 744, 856
CseI	GACGC	2 cut(s)	29, 445
CviAII	CATG	2 cut(s)	64, 460
DdeI	CTNAG	5 cut(s)	57, 399, 650, 818, 945
DpnI	GATC	4 cut(s)	62, 68, 560, 752
DpnII	GATC	4 cut(s)	60, 66, 558, 750
EaeI	YGGCCR	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	532
EciI	GGCGGA	5 cut(s)	143, 158, 400, 436, 484
Ecl136II	GAGCTC	2 cut(s)	475, 657
Eco24I	GRGCYC	2 cut(s)	477, 659
Eco47I	GGWCC	2 cut(s)	463, 744
Eco53kI	GAGCTC	2 cut(s)	475, 657
Eco88I	CYCGRG	1 cut(s)	677
EcoICRI	GAGCTC	2 cut(s)	475, 657
EcoNI	CCTNNNNNAGG	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	413, 1061
EcoT38I	GRGCYC	2 cut(s)	477, 659
FaeI	CATG	2 cut(s)	67, 463
FaiI	YATR	3 cut(s)	65, 461, 875
FaqI	GGGAC	5 cut(s)	337, 710, 757, 860, 986
FatI	CATG	2 cut(s)	63, 459
FauI	CCCGC	4 cut(s)	386, 461, 557, 847
Fnu4HI	GCNGC	5 cut(s)	73, 382, 480, 553, 922
FokI	GGATG	2 cut(s)	107, 874
FriOI	GRGCYC	2 cut(s)	477, 659
Fsp4HI	GCNGC	5 cut(s)	73, 382, 480, 553, 922
GlaI	GCGC	2 cut(s)	483, 637
GluI	GCNGC	5 cut(s)	73, 382, 480, 553, 922
GsaI	CCCAGC	1 cut(s)	841
HaeIII	GGCC	6 cut(s)	309, 326, 569, 721, 858, 1061
HapII	CCGG	6 cut(s)	306, 504, 859, 866, 983, 1020
HgaI	GACGC	2 cut(s)	29, 445
HhaI	GCGC	2 cut(s)	484, 638
Hin1I	GRCGYC	2 cut(s)	21, 594
Hin1II	CATG	2 cut(s)	67, 463
Hin6I	GCGC	2 cut(s)	482, 636
HinP1I	GCGC	2 cut(s)	482, 636
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	6 cut(s)	5, 329, 338, 443, 572, 808
HpaII	CCGG	6 cut(s)	306, 504, 859, 866, 983, 1020
HphI	GGTGA	5 cut(s)	97, 367, 382, 460, 1060
Hpy166II	GTNNAC	2 cut(s)	442, 669
Hpy188I	TCNGA	2 cut(s)	60, 813
Hpy188III	TCNNGA	4 cut(s)	64, 679, 754, 890
Hpy8I	GTNNAC	2 cut(s)	442, 669
Hpy99I	CGWCG	6 cut(s)	23, 296, 362, 596, 599, 808
HpyAV	CCTTC	2 cut(s)	127, 283
HpyCH4IV	ACGT	4 cut(s)	219, 594, 665, 699
HpyCH4V	TGCA	2 cut(s)	366, 1041
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 249, 481, 597, 682
HpyF3I	CTNAG	5 cut(s)	57, 399, 650, 818, 945
HpySE526I	ACGT	4 cut(s)	219, 594, 665, 699
Hsp92I	GRCGYC	2 cut(s)	21, 594
Hsp92II	CATG	2 cut(s)	67, 463
HspAI	GCGC	2 cut(s)	482, 636
KroI	GCCGGC	1 cut(s)	503
KroNI	GCCGGC	1 cut(s)	505
Kzo9I	GATC	4 cut(s)	60, 66, 558, 750
LmnI	GCTCC	7 cut(s)	80, 252, 284, 413, 434, 612, 654
Lsp1109I	GCAGC	1 cut(s)	564
LweI	GCATC	1 cut(s)	852
MaeII	ACGT	4 cut(s)	219, 594, 665, 699
MalI	GATC	4 cut(s)	62, 68, 560, 752
MbiI	CCGCTC	2 cut(s)	75, 279
MboI	GATC	4 cut(s)	60, 66, 558, 750
MboII	GAAGA	6 cut(s)	28, 214, 519, 527, 571, 768
MfeI	CAATTG	1 cut(s)	976
MflI	RGATCY	1 cut(s)	750
MhlI	GDGCHC	3 cut(s)	477, 659, 803
MluCI	AATT	2 cut(s)	521, 976
MlyI	GAGTC	5 cut(s)	14, 323, 332, 437, 566
MroNI	GCCGGC	1 cut(s)	503
MroXI	GAANNNNTTC	1 cut(s)	626
MseI	TTAA	1 cut(s)	879
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	6 cut(s)	306, 504, 859, 866, 983, 1020
MspR9I	CCNGG	4 cut(s)	415, 984, 1020, 1063
MunI	CAATTG	1 cut(s)	976
MvaI	CCWGG	2 cut(s)	415, 1063
MvnI	CGCG	3 cut(s)	456, 482, 735
MwoI	GCNNNNNNNGC	5 cut(s)	81, 249, 481, 597, 682
NaeI	GCCGGC	1 cut(s)	505
NciI	CCSGG	2 cut(s)	984, 1020
NdeII	GATC	4 cut(s)	60, 66, 558, 750
NgoMIV	GCCGGC	1 cut(s)	503
NlaIII	CATG	2 cut(s)	67, 463
NlaIV	GGNNCC	5 cut(s)	248, 409, 430, 614, 745
NmeAIII	GCCGAG	2 cut(s)	384, 773
NspV	TTCGAA	1 cut(s)	644
PaeR7I	CTCGAG	1 cut(s)	677
PagI	TCATGA	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	2 cut(s)	588, 800
PdiI	GCCGGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	626
PfeI	GAWTC	1 cut(s)	808
PflFI	GACNNNGTC	1 cut(s)	575
PfoI	TCCNGGA	1 cut(s)	1018
PkrI	GCNGC	5 cut(s)	74, 383, 481, 554, 923
PleI	GAGTC	5 cut(s)	13, 323, 332, 437, 566
PpsI	GAGTC	5 cut(s)	13, 323, 332, 437, 566
PshAI	GACNNNNGTC	1 cut(s)	978
Psp124BI	GAGCTC	2 cut(s)	477, 659
Psp6I	CCWGG	2 cut(s)	413, 1061
PspFI	CCCAGC	1 cut(s)	837
PspGI	CCWGG	2 cut(s)	413, 1061
PspN4I	GGNNCC	5 cut(s)	248, 409, 430, 614, 745
PspPI	GGNCC	4 cut(s)	324, 463, 744, 856
PsuI	RGATCY	1 cut(s)	750
PsyI	GACNNNGTC	1 cut(s)	575
SacI	GAGCTC	2 cut(s)	477, 659
SaqAI	TTAA	1 cut(s)	879
SatI	GCNGC	5 cut(s)	73, 382, 480, 553, 922
Sau3AI	GATC	4 cut(s)	60, 66, 558, 750
Sau96I	GGNCC	4 cut(s)	324, 463, 744, 856
SchI	GAGTC	5 cut(s)	14, 323, 332, 437, 566
ScrFI	CCNGG	4 cut(s)	415, 984, 1020, 1063
SduI	GDGCHC	3 cut(s)	477, 659, 803
SfaNI	GCATC	1 cut(s)	852
Sfr274I	CTCGAG	1 cut(s)	677
SfuI	TTCGAA	1 cut(s)	644
SinI	GGWCC	2 cut(s)	463, 744
SlaI	CTCGAG	1 cut(s)	677
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	2 cut(s)	521, 976
SstI	GAGCTC	2 cut(s)	477, 659
StyD4I	CCNGG	4 cut(s)	413, 982, 1018, 1061
TaiI	ACGT	4 cut(s)	222, 597, 668, 702
TaqI	TCGA	6 cut(s)	225, 261, 644, 678, 705, 803
TaqII	GACCGA	1 cut(s)	565
TasI	AATT	2 cut(s)	521, 976
TauI	GCSGC	4 cut(s)	75, 384, 482, 924
TfiI	GAWTC	1 cut(s)	808
Tru1I	TTAA	1 cut(s)	879
Tru9I	TTAA	1 cut(s)	879
TscAI	CASTG	2 cut(s)	518, 623
TseI	GCWGC	1 cut(s)	552
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	2 cut(s)	67, 421
TspRI	CASTG	2 cut(s)	518, 623
Tth111I	GACNNNGTC	1 cut(s)	575
VpaK11BI	GGWCC	2 cut(s)	463, 744
XagI	CCTNNNNNAGG	1 cut(s)	418
XapI	RAATTY	1 cut(s)	521
XcmI	CCANNNNNNNNNTGG	2 cut(s)	457, 754
XhoI	CTCGAG	1 cut(s)	677
XmnI	GAANNNNTTC	1 cut(s)	626
ZraI	GACGTC	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.