Prupe.8G238800_v2.0.a1

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0003569
Physical Location & Seq
Forward (+)
21009373 .. 21010679
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G238800.1

Sequence Viewer

Length: 729 bp
ATGCCAAACACACTAGGAAGAAACCTAAATCTCTGCTTCACAAAGATCACACGGCCACTCACTCTCCACTCCCCAGATAACGATCACAGCAGTCCATTACCCACCACCGCCGCCGACGCCGCTACCGCCACCACATCCACGTCATCAACCTCATTGATGATAAAAAACTTCAACTCCCTCTACGACGACCAGTACATGTTTGACTCCACCACCACCTCCAAATCCCTCAGCTCCTCCTTCGTCTCCTCCTCCGAAACCGAAACCGACGCCCCCGCCGCCGACTTCGCCACCGCTTTCGCCTCCCGTCGCTTCTTCTTCTCCTCCCCAGGCCGCTCCAACTCCATCGTCGACCAATCCGCATCGCCACCGTCGTCCATTGCCGCCTCGTCAGAGTCCCCCGACCACAAGCTCGTCAACCACAGCGTGGCGGTCCCCACTTTTTCGCCGGACCCTTACCGGGACTTTCGGCGGTCCATGCAGGAGATGGTGGAGGCGCGTGAGGGAACGAAAAACGAAGAGGAGGAGGGCGGGAAGAATAAATCAAACTGGGAATTCTTGCATGAGCTTCTGCTGTGCTATCTTGCGCTCAACCCTAAGAGTACCCACAAGTTCATCATCGGCGCTTTTGCCGATCTTCTCGTCAGCCTCATGCCATCTCCCGGTGGGGGTGACGGCGGAGAATTACCCGAGTTCACAGCTGGCGTCTGTGAGATTTCACGGTGCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

243

Amino Acids

26.15

Weight (kDa)

5.02

Isoelectric Point (pI)

62.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 424
AccBSI CCGCTC 1 cut(s) 333
AccI GTMKAC 1 cut(s) 348
AccII CGCG 1 cut(s) 496
AcoI YGGCCR 1 cut(s) 53
AcsI RAATTY 1 cut(s) 551
AcyI GRCGYC 3 cut(s) 117, 267, 702
AdeI CACNNNGTG 1 cut(s) 424
AfaI GTAC 2 cut(s) 194, 601
AfiI CCNNNNNNNGG 4 cut(s) 424, 457, 659, 665
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 1 cut(s) 172
AjiI CACGTC 1 cut(s) 141
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 4 cut(s) 231, 409, 565, 698
AluI AGCT 4 cut(s) 231, 409, 565, 698
Alw26I GTCTC 1 cut(s) 247
Ama87I CYCGRG 1 cut(s) 686
AoxI GGCC 2 cut(s) 53, 328
ApoI RAATTY 1 cut(s) 551
AspLEI GCGC 3 cut(s) 496, 586, 623
AspS9I GGNCC 3 cut(s) 430, 448, 471
AsuC2I CCSGG 2 cut(s) 458, 660
AsuHPI GGTGA 1 cut(s) 680
AvaI CYCGRG 1 cut(s) 686
AvaII GGWCC 3 cut(s) 430, 448, 471
BbvCI CCTCAGC 1 cut(s) 227
BccI CCATC 3 cut(s) 350, 478, 661
BceAI ACGGC 2 cut(s) 68, 688
BciT130I CCWGG 1 cut(s) 327
BcnI CCSGG 2 cut(s) 458, 660
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 624
BisI GCNGC 5 cut(s) 111, 120, 276, 331, 381
BlsI GCNGC 5 cut(s) 112, 121, 277, 332, 382
Bme1390I CCNGG 3 cut(s) 327, 458, 660
Bme18I GGWCC 3 cut(s) 430, 448, 471
BmeT110I CYCGRG 1 cut(s) 686
BmgBI CACGTC 1 cut(s) 141
BmgT120I GGNCC 3 cut(s) 430, 448, 471
BmiI GGNNCC 2 cut(s) 432, 450
BmrFI CCNGG 3 cut(s) 327, 458, 660
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 1 cut(s) 368
BmuI ACTGGG 1 cut(s) 556
Bpu10I CCTNAGC 1 cut(s) 227
BpuMI CCSGG 2 cut(s) 458, 660
BsaBI GATNNNNATC 1 cut(s) 81
BsaHI GRCGYC 3 cut(s) 117, 267, 702
BsaJI CCNNGG 1 cut(s) 325
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 158, 188
Bsc4I CCNNNNNNNGG 4 cut(s) 424, 457, 659, 665
Bse1I ACTGG 2 cut(s) 190, 551
Bse3DI GCAATG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 81
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 325
BseGI GGATG 1 cut(s) 134
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 4 cut(s) 424, 457, 659, 665
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 241
BseNI ACTGG 2 cut(s) 190, 551
BseRI GAGGAG 6 cut(s) 223, 235, 238, 310, 533, 536
Bsh1236I CGCG 1 cut(s) 496
BshFI GGCC 2 cut(s) 55, 330
BsiHKCI CYCGRG 1 cut(s) 686
BsiSI CCGG 3 cut(s) 446, 457, 660
BslFI GGGAC 3 cut(s) 379, 416, 473
BslI CCNNNNNNNGG 4 cut(s) 424, 457, 659, 665
BsmAI GTCTC 1 cut(s) 247
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 3 cut(s) 379, 416, 473
BsnI GGCC 2 cut(s) 55, 330
BsoBI CYCGRG 1 cut(s) 686
Bsp143I GATC 3 cut(s) 45, 82, 631
BspANI GGCC 2 cut(s) 55, 330
BspCNI CTCAG 1 cut(s) 240
BspFNI CGCG 1 cut(s) 496
BspLI GGNNCC 2 cut(s) 432, 450
BsrBI CCGCTC 1 cut(s) 333
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 2 cut(s) 190, 551
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 3 cut(s) 45, 82, 631
BssNI GRCGYC 3 cut(s) 117, 267, 702
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 369, 720
Bst6I CTCTTC 1 cut(s) 510
BstACI GRCGYC 3 cut(s) 117, 267, 702
BstC8I GCNNGC 1 cut(s) 700
BstDEI CTNAG 2 cut(s) 227, 594
BstF5I GGATG 1 cut(s) 134
BstFNI CGCG 1 cut(s) 496
BstH2I RGCGCY 1 cut(s) 624
BstHHI GCGC 3 cut(s) 496, 586, 623
BstKTI GATC 3 cut(s) 48, 85, 634
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 3 cut(s) 45, 82, 631
BstMWI GCNNNNNNNGC 6 cut(s) 116, 119, 125, 275, 284, 475
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 325, 456, 658
BstUI CGCG 1 cut(s) 496
BsuRI GGCC 2 cut(s) 55, 330
BtgZI GCGATG 1 cut(s) 345
BtrI CACGTC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 700
CfoI GCGC 3 cut(s) 496, 586, 623
Cfr13I GGNCC 3 cut(s) 430, 448, 471
CseI GACGC 4 cut(s) 125, 275, 691, 712
Csp6I GTAC 2 cut(s) 193, 600
CviAII CATG 4 cut(s) 196, 475, 560, 649
CviJI RGCY 7 cut(s) 55, 231, 330, 409, 565, 645, 698
CviKI_1 RGCY 7 cut(s) 55, 231, 330, 409, 565, 645, 698
CviQI GTAC 2 cut(s) 193, 600
DdeI CTNAG 2 cut(s) 227, 594
DpnI GATC 3 cut(s) 47, 84, 633
DpnII GATC 3 cut(s) 45, 82, 631
DraIII CACNNNGTG 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
EciI GGCGGA 1 cut(s) 690
Eco47I GGWCC 3 cut(s) 430, 448, 471
Eco88I CYCGRG 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 325
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 4 cut(s) 199, 478, 563, 652
FaiI YATR 4 cut(s) 197, 476, 561, 650
FaqI GGGAC 3 cut(s) 379, 416, 473
FatI CATG 4 cut(s) 195, 474, 559, 648
FauI CCCGC 2 cut(s) 280, 521
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 5 cut(s) 111, 120, 276, 331, 381
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 5 cut(s) 111, 120, 276, 331, 381
FspBI CTAG 1 cut(s) 14
GlaI GCGC 3 cut(s) 495, 585, 622
GluI GCNGC 5 cut(s) 111, 120, 276, 331, 381
HaeII RGCGCY 1 cut(s) 624
HaeIII GGCC 2 cut(s) 55, 330
HapII CCGG 3 cut(s) 446, 457, 660
HgaI GACGC 4 cut(s) 125, 275, 691, 712
HhaI GCGC 3 cut(s) 496, 586, 623
Hin1I GRCGYC 3 cut(s) 117, 267, 702
Hin1II CATG 4 cut(s) 199, 478, 563, 652
Hin6I GCGC 3 cut(s) 494, 584, 621
HinP1I GCGC 3 cut(s) 494, 584, 621
HincII GTYRAC 2 cut(s) 349, 415
HindII GTYRAC 2 cut(s) 349, 415
HinfI GANTC 2 cut(s) 203, 392
HpaII CCGG 3 cut(s) 446, 457, 660
HphI GGTGA 1 cut(s) 680
Hpy166II GTNNAC 3 cut(s) 349, 415, 693
Hpy188I TCNGA 3 cut(s) 253, 391, 728
Hpy8I GTNNAC 3 cut(s) 349, 415, 693
Hpy99I CGWCG 6 cut(s) 119, 188, 269, 309, 350, 373
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 2 cut(s) 369, 720
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 478, 559
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 119, 125, 275, 284, 475
HpyF3I CTNAG 2 cut(s) 227, 594
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 3 cut(s) 117, 267, 702
Hsp92II CATG 4 cut(s) 199, 478, 563, 652
HspAI GCGC 3 cut(s) 494, 584, 621
Kzo9I GATC 3 cut(s) 45, 82, 631
LmnI GCTCC 2 cut(s) 236, 338
LweI GCATC 1 cut(s) 368
MaeI CTAG 1 cut(s) 14
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 668
MalI GATC 3 cut(s) 47, 84, 633
MbiI CCGCTC 1 cut(s) 333
MboI GATC 3 cut(s) 45, 82, 631
MboII GAAGA 6 cut(s) 30, 304, 307, 527, 544, 626
MluCI AATT 2 cut(s) 551, 680
MlyI GAGTC 2 cut(s) 197, 401
MmeI TCCRAC 1 cut(s) 360
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 3 cut(s) 446, 457, 660
MspR9I CCNGG 3 cut(s) 327, 458, 660
MvaI CCWGG 1 cut(s) 327
MvnI CGCG 1 cut(s) 496
MwoI GCNNNNNNNGC 6 cut(s) 116, 119, 125, 275, 284, 475
NciI CCSGG 2 cut(s) 458, 660
NdeII GATC 3 cut(s) 45, 82, 631
NlaIII CATG 4 cut(s) 199, 478, 563, 652
NlaIV GGNNCC 2 cut(s) 432, 450
NmuCI GTSAC 1 cut(s) 668
NspI RCATGY 1 cut(s) 199
PciI ACATGT 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 424
PkrI GCNGC 5 cut(s) 112, 121, 277, 332, 382
PleI GAGTC 2 cut(s) 197, 400
PpsI GAGTC 2 cut(s) 197, 400
PscI ACATGT 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 432, 450
PspPI GGNCC 3 cut(s) 430, 448, 471
PvuII CAGCTG 1 cut(s) 698
RsaI GTAC 2 cut(s) 194, 601
RsaNI GTAC 2 cut(s) 193, 600
SalI GTCGAC 1 cut(s) 347
SatI GCNGC 5 cut(s) 111, 120, 276, 331, 381
Sau3AI GATC 3 cut(s) 45, 82, 631
Sau96I GGNCC 3 cut(s) 430, 448, 471
SchI GAGTC 2 cut(s) 197, 401
ScrFI CCNGG 3 cut(s) 327, 458, 660
SetI ASST 8 cut(s) 27, 143, 152, 218, 233, 411, 567, 700
SfaNI GCATC 1 cut(s) 368
SinI GGWCC 3 cut(s) 430, 448, 471
Sse9I AATT 2 cut(s) 551, 680
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 3 cut(s) 325, 456, 658
TaaI ACNGT 2 cut(s) 369, 720
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 348
TasI AATT 2 cut(s) 551, 680
TatI WGTACW 1 cut(s) 192
TauI GCSGC 5 cut(s) 113, 122, 278, 333, 383
TseFI GTSAC 1 cut(s) 668
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 1 cut(s) 601
Van91I CCANNNNNTGG 1 cut(s) 424
VpaK11BI GGWCC 3 cut(s) 430, 448, 471
XapI RAATTY 1 cut(s) 551
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.